Marmal -aid: a tool for genomics processing

11
Marmal-aid: a tool for genomics processing Robert Lowe

description

Marmal -aid: a tool for genomics processing. Robert Lowe. Healthy. Disease. Growth of Methylation Datasets. Normalisation. Raw Data Sample. Calculate 25 nearest neighbours. Impute missing data. Quantile Normalisation. Imputing Missing Data. Imputing Missing Data. - PowerPoint PPT Presentation

Transcript of Marmal -aid: a tool for genomics processing

Page 1: Marmal -aid: a tool for genomics processing

Marmal-aid: a tool for genomics processing

Robert Lowe

Page 2: Marmal -aid: a tool for genomics processing

Healthy

Disease

Page 3: Marmal -aid: a tool for genomics processing

Growth of Methylation Datasets

Page 4: Marmal -aid: a tool for genomics processing
Page 5: Marmal -aid: a tool for genomics processing

Normalisation

Raw Data Sample

Calculate 25 nearest neighbours Impute missing data

Quantile Normalisation

Page 6: Marmal -aid: a tool for genomics processing

Imputing Missing Data

Page 7: Marmal -aid: a tool for genomics processing

Imputing Missing Data

Page 8: Marmal -aid: a tool for genomics processing

Imputing Missing Data

Page 9: Marmal -aid: a tool for genomics processing

Investigating Batch Effects

Page 10: Marmal -aid: a tool for genomics processing

Investigating Batch Effects

Page 11: Marmal -aid: a tool for genomics processing

Acknowledgements

• Vardhman Rakyan• BLUEPRINT (EU)Email: [email protected]: http://marmal-aid.org

mailto:[email protected]
http://marmal-aid.org/

Processing Terabyte-Scale Genomics Datasets with ADAM: Spark Summit East talk by Frank Austin Nothaft

Processing Terabyte-Scale Genomics Datasets with ADAM: Spark Summit East talk by Frank Austin Nothaft

and their use as food processing aid. - Bienvenue au site ... · Production of chitin and chitosan fiom crustacean waste and their use as a food processing aid. by ... Literature

and their use as food processing aid. - Bienvenue au site ... · Production of chitin and chitosan fiom crustacean waste and their use as a food processing aid. by ... Literature

Volume 4 Processing Aid and Managing FSA Funds …Volume 4—Processing Aid and Managing FSA Funds, 2019–2020 4– 4– 4

Volume 4 Processing Aid and Managing FSA Funds …Volume 4—Processing Aid and Managing FSA Funds, 2019–2020 4– 4– 4

DuPont GenX Processing Aid for Making Fluoropolymer Resins · DUPONT™ GENX PROCESSING AID FOR MAKING FLUOROPOLYMER RESINS Introduction DuPont has achieved a significant milestone

DuPont GenX Processing Aid for Making Fluoropolymer Resins · DUPONT™ GENX PROCESSING AID FOR MAKING FLUOROPOLYMER RESINS Introduction DuPont has achieved a significant milestone

Functional genomics approaches to disease genomics

Functional genomics approaches to disease genomics

Volume 4 Processing Aid and Managing FSA Funds … 4—Processing Aid and Managing FSA Funds, 20172018 FSA HB uly 2017 MAINTAINING AND ACCOUNTING FOR FUNDS 4-16 When a school does

Volume 4 Processing Aid and Managing FSA Funds … 4—Processing Aid and Managing FSA Funds, 20172018 FSA HB uly 2017 MAINTAINING AND ACCOUNTING FOR FUNDS 4-16 When a school does

food industry guide to Allergen MAnAgeMent and lAbelling · a food additive or a component of a food additive; or a processing aid or a component of a processing aid. Schedule 4 to

food industry guide to Allergen MAnAgeMent and lAbelling · a food additive or a component of a food additive; or a processing aid or a component of a processing aid. Schedule 4 to

Review and Adjustment Processing Desk Aid

Review and Adjustment Processing Desk Aid

CURRENT GENOMICS, 2008 1 Signal Processing for ......CURRENT GENOMICS, 2008 1 Signal Processing for Metagenomics: Extracting Information from the Soup Gail L. Rosen1, Bahrad A. Sokhansanj2,

CURRENT GENOMICS, 2008 1 Signal Processing for ......CURRENT GENOMICS, 2008 1 Signal Processing for Metagenomics: Extracting Information from the Soup Gail L. Rosen1, Bahrad A. Sokhansanj2,

Patents: Digital Hearing Aids and Related Devices...the hearing aid as the hearing aid and/or user response characteristics change, a digital data processing element (12) processing

Patents: Digital Hearing Aids and Related Devices...the hearing aid as the hearing aid and/or user response characteristics change, a digital data processing element (12) processing

Microbial genomics Genomics: study of entire genomes Logical next step after genetics: study of genes Genomics: 1) “Structural genomics” * Determine and.

Microbial genomics Genomics: study of entire genomes Logical next step after genetics: study of genes Genomics: 1) “Structural genomics” * Determine and.

MIDDLESEX COMMUNITY COLLEGE · 2019-09-18 · Financial Aid •Financial aid counseling •FAFSA Workshops •Computer availability for online processing Deborah Marsella Cowan Center,

MIDDLESEX COMMUNITY COLLEGE · 2019-09-18 · Financial Aid •Financial aid counseling •FAFSA Workshops •Computer availability for online processing Deborah Marsella Cowan Center,

FINANCIAL AID ELECTRONIC PROCESSING

FINANCIAL AID ELECTRONIC PROCESSING

Processing and Using Institutional Financial Aid Applications

Processing and Using Institutional Financial Aid Applications

Processing Federal Financial Aid Applications - IT@Cornell · Financial Aid EDI Transactions FA_ECTRANS Set Up SACR, Product Related, Financial Aid, File Management, Maintain EDI

Processing Federal Financial Aid Applications - IT@Cornell · Financial Aid EDI Transactions FA_ECTRANS Set Up SACR, Product Related, Financial Aid, File Management, Maintain EDI

Colleague Financial Aid Using ISIR Processing for ...

Colleague Financial Aid Using ISIR Processing for ...

Financial Aid Bulletin 2018-2019 - San Diego Community ... Aid Bulletin.pdfDistrict (SDCCD) Financial Aid Bulletin is intended to help you understand the timeline and policies of processing

Financial Aid Bulletin 2018-2019 - San Diego Community ... Aid Bulletin.pdfDistrict (SDCCD) Financial Aid Bulletin is intended to help you understand the timeline and policies of processing

Processing State Aid using Microsoft Access and Banner

Processing State Aid using Microsoft Access and Banner

ADAM: Genomics Formats and Processing Patterns for Cloud ...ADAM: Genomics Formats and Processing Patterns for Cloud Scale Computing Matt Massie 1, Frank Austin Nothaft , Christopher

ADAM: Genomics Formats and Processing Patterns for Cloud ...ADAM: Genomics Formats and Processing Patterns for Cloud Scale Computing Matt Massie 1, Frank Austin Nothaft , Christopher

Processing Federal Financial Aid Applications€¦ · Processing Federal Financial Aid Applications Chapter _ 2 Copyright © 1988, 2015, Oracle and/or its affiliates. All rights reserved.

Processing Federal Financial Aid Applications€¦ · Processing Federal Financial Aid Applications Chapter _ 2 Copyright © 1988, 2015, Oracle and/or its affiliates. All rights reserved.