LOCUS pSicoR-GFP 7567 bp DNA circular...

87
LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT This file is created by Vector NTI http://www.informaxinc.com/ COMMENT VNTDATE|330781285| COMMENT VNTDBDATE|341686736| COMMENT VNTNAME|pSicoR-GFP| COMMENT VNTAUTHORNAME|Demo User| COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!) COMMENT (SXF COMMENT (CGexDoc "pSicoR-GFP" 0 7567 COMMENT (CDBMol 0 0 1 1 1 0 0 0 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList) COMMENT (CObList)) COMMENT (CDocSetData 1 1 0 0 1 1 "MAIN" 1 1 1 1 0 0 1 1 0 1 10 10 40 50 0 1 0 COMMENT (CHomObj 0 0 0 3 75) (CWordArray) (CWordArray) COMMENT (CStringList "AatI" "AatII" "Acc65I" "AccI" "AccIII" "AciI" "AcsI" COMMENT "AcyI" "AflII" "AflIII" "AgeI" "AluI" "Alw44I" "AlwI" "AlwNI" "AosI" COMMENT "ApaI" "ApaLI" "ApoI" "AscI" "AseI" "AsnI" "Asp700" "Asp718" "AspEI" COMMENT "AspHI" "AspI" "AsuII" "AvaI" "AvaII" "AviII" "AvrII" "BamHI" "BanI" COMMENT "BanII" "BbrPI" "BbsI" "BbvI" "BcgI" "BclI" "BfaI" "BfrI" "BglI" COMMENT "BglII" "BlnI" "BmyI" "BpmI" "Bpu1102I" "BpuAI" "BsaAI" "BsaBI" "BsaHI" COMMENT "BsaI" "BsaJI" "BsaWI" "BseAI" "BsgI" "BsiEI" "BsiHKAI" "BsiWI" "BsiYI" COMMENT "BslI" "BsmAI" "BsmFI" "BsmI" "Bsp120I" "Bsp1286I" "BspDI" "BspEI" COMMENT "BspHI" "BspMI" "BspWI" "BsrBI" "BsrDI" "BsrFI" "BsrGI" "BsrI" "BssHII" COMMENT "Bst1107I" "BstBI" "BstEII" "BstNI" "BstUI" "BstXI" "BstYI" "Bsu36I" COMMENT "CelII" "CfoI" "Cfr10I" "ClaI" "Csp45I" "Csp6I" "DdeI" "DpnI" "DpnII" COMMENT "DraI" "DraII" "DraIII" "DrdI" "DsaI" "DsaV" "EaeI" "EagI" "Eam1105I" COMMENT "EarI" "Ecl136II" "EclXI" "Eco47III" "Eco57I" "EcoNI" "EcoO109I" COMMENT "EcoRI" "EcoRII" "EcoRV" "Esp3I" "EspI" "Fnu4HI" "FnuDII" "FokI" "FspI" COMMENT "HaeII" "HaeIII" "HgaI" "HgiAI" "HhaI" "HincII" "HindII" "HindIII" COMMENT "HinfI" "HinP1I" "HpaI" "HpaII" "HphI" "ItaI" "KasI" "KpnI" "Ksp632I"

Transcript of LOCUS pSicoR-GFP 7567 bp DNA circular...

Page 1: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004SOURCE ORGANISMCOMMENT This file is created by Vector NTI http://www.informaxinc.com/COMMENT VNTDATE|330781285|COMMENT VNTDBDATE|341686736|COMMENT VNTNAME|pSicoR-GFP|COMMENT VNTAUTHORNAME|Demo User|COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!)COMMENT (SXFCOMMENT (CGexDoc "pSicoR-GFP" 0 7567COMMENT (CDBMol 0 0 1 1 1 0 0 0 0 "" "" 0 0 0 0 (CObList) (CObList)(CObList)COMMENT (CObList))COMMENT (CDocSetData 1 1 0 0 1 1 "MAIN" 1 1 1 1 0 0 1 1 0 1 10 10 40 50 01 0COMMENT (CHomObj 0 0 0 3 75) (CWordArray) (CWordArray)COMMENT (CStringList "AatI" "AatII" "Acc65I" "AccI" "AccIII" "AciI""AcsI"COMMENT "AcyI" "AflII" "AflIII" "AgeI" "AluI" "Alw44I" "AlwI" "AlwNI""AosI"COMMENT "ApaI" "ApaLI" "ApoI" "AscI" "AseI" "AsnI" "Asp700" "Asp718""AspEI"COMMENT "AspHI" "AspI" "AsuII" "AvaI" "AvaII" "AviII" "AvrII" "BamHI""BanI"COMMENT "BanII" "BbrPI" "BbsI" "BbvI" "BcgI" "BclI" "BfaI" "BfrI" "BglI"COMMENT "BglII" "BlnI" "BmyI" "BpmI" "Bpu1102I" "BpuAI" "BsaAI" "BsaBI""BsaHI"COMMENT "BsaI" "BsaJI" "BsaWI" "BseAI" "BsgI" "BsiEI" "BsiHKAI" "BsiWI""BsiYI"COMMENT "BslI" "BsmAI" "BsmFI" "BsmI" "Bsp120I" "Bsp1286I" "BspDI""BspEI"COMMENT "BspHI" "BspMI" "BspWI" "BsrBI" "BsrDI" "BsrFI" "BsrGI" "BsrI""BssHII"COMMENT "Bst1107I" "BstBI" "BstEII" "BstNI" "BstUI" "BstXI" "BstYI""Bsu36I"COMMENT "CelII" "CfoI" "Cfr10I" "ClaI" "Csp45I" "Csp6I" "DdeI" "DpnI""DpnII"COMMENT "DraI" "DraII" "DraIII" "DrdI" "DsaI" "DsaV" "EaeI" "EagI""Eam1105I"COMMENT "EarI" "Ecl136II" "EclXI" "Eco47III" "Eco57I" "EcoNI" "EcoO109I"COMMENT "EcoRI" "EcoRII" "EcoRV" "Esp3I" "EspI" "Fnu4HI" "FnuDII" "FokI""FspI"COMMENT "HaeII" "HaeIII" "HgaI" "HgiAI" "HhaI" "HincII" "HindII""HindIII"COMMENT "HinfI" "HinP1I" "HpaI" "HpaII" "HphI" "ItaI" "KasI" "KpnI""Ksp632I"

Page 2: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "KspI" "MaeI" "MaeII" "MaeIII" "MamI" "MboI" "MboII" "McrI""MfeI"COMMENT "MluI" "MluNI" "MnlI" "MroI" "MscI" "MseI" "MslI" "MspA1I""MspI"COMMENT "MunI" "MvaI" "MvnI" "MwoI" "NaeI" "NarI" "NciI" "NcoI" "NdeI""NdeII"COMMENT "NgoMI" "NheI" "NlaIII" "NlaIV" "NotI" "NruI" "NsiI" "NspI""NspV"COMMENT "PacI" "PaeR7I" "PflMI" "PinAI" "PleI" "PmaCI" "PmeI" "PmlI""Ppu10I"COMMENT "PpuMI" "Psp1406I" "PstI" "PvuI" "PvuII" "RcaI" "RsaI" "RsrII""SacI"COMMENT "SacII" "SalI" "SapI" "Sau3AI" "Sau96I" "ScaI" "ScrFI" "SexAI""SfaNI"COMMENT "SfcI" "SfiI" "SfuI" "SgrAI" "SmaI" "SnaBI" "SnoI" "SpeI" "SphI"COMMENT "SspBI" "SspI" "StuI" "StyI" "SwaI" "TaqI" "TfiI" "ThaI" "Tru9I"COMMENT "Tsp509I" "Tth111I" "Van91I" "XbaI" "XcmI" "XhoI" "XhoII" "XmaI"COMMENT "XmaIII" "XmnI") (CStringList "atg" "gtg")COMMENT (CStringList "taa" "tga" "tag") (CObList) 1 "{(0,1),2}" 0 0 "" 0COMMENT 4294967295 0 0 0 0 0 0) (CMolPar 0 0 0 1 7567 1 7567 0 0 0 0 0 00 0)COMMENT (CStringList) (CStringList) (CObList) (COAPar 25 250 50 0 6 4 3 7)COMMENT (COAPar 25 250 50 0 6 4 3 7) (COAPar 25 250 50 0 6 4 3 7)COMMENT (CObListCOMMENT #0=(CRSite (CStringList) "ApaLI" "gtgcac" 2 0 4 45 0 4666 0 60690 7315COMMENT 0)COMMENT #1=(CRSite (CStringList) "AvaI" "cycgrg" 2 0 3 2320 0 2960 0 55480)COMMENT #2=(CRSite (CStringList) "BamHI" "ggatcc" 2 0 1 2971 0)COMMENT #3=(CRSite (CStringList) "ClaI" "atcgat" 3 0 2 4452 0 5047 0)COMMENT #4=(CRSite (CStringList) "EcoRI" "gaattc" 2 0 1 4349 0)COMMENT #5=(CRSite (CStringList) "HindIII" "aagctt" 2 0 5 922 0 1478 02068 0COMMENT 4445 0 5651 0)COMMENT #6=(CRSite (CStringList) "NcoI" "ccatgg" 2 0 3 623 0 3376 0 36270)COMMENT #7=(CRSite (CStringList) "PstI" "ctgcag" 6 0 1 2430 0)COMMENT #8=(CRSite (CStringList) "SmaI" "cccggg" 4 0 0)COMMENT #9=(CRSite (CStringList) "XmaI" "cccggg" 2 0 0)COMMENT #10=(CRSite (CStringList) "AatI" "aggcct" 4 0 0)COMMENT #11=(CRSite (CStringList) "AatII" "gacgtc" 6 0 9 388 0 441 0 5240 710 0COMMENT 3141 0 3194 0 3277 0 3463 0 4910 0)COMMENT #12=(CRSite (CStringList) "Acc65I" "ggtacc" 2 0 1 5183 0)COMMENT #13=(CRSite (CStringList) "AccI" "gtmkac" 3 0 4 12 0 1353 0 25060 5056COMMENT 0) #14=(CRSite (CStringList) "AccIII" "tccgga" 2 0 1 5561 0)

Page 3: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #15=(CRSite (CStringList) "AciI" "ccgc" 2 4 73 8 1 74 0 321 0 3490 361COMMENT 0 375 0 542 0 633 1 666 1 770 0 791 1 1125 1 1160 1 1206 11523 0COMMENT 1534 1 1542 0 2622 0 2641 0 2656 0 2951 1 2982 1 2986 0 30060 3074COMMENT 0 3102 0 3114 0 3128 0 3295 0 3386 1 3419 1 3523 0 3544 13605 0COMMENT 3847 0 3888 0 3955 0 3994 0 4132 0 4245 0 4305 0 4308 0 47661 4779COMMENT 0 4792 0 4902 1 4943 1 4957 0 4959 1 4978 1 4988 0 5034 05042 0COMMENT 5450 0 5525 0 5800 0 5828 0 5955 0 5974 0 6095 0 6205 1 63400 6349COMMENT 1 6711 0 6802 0 6993 1 7039 0 7160 1 7204 0 7281 0 7390 07489 1COMMENT 7536 0)COMMENT #16=(CRSite (CStringList) "AcsI" "raatty" 2 0 7 140 0 1148 0 12350 2560COMMENT 0 2567 0 4349 0 4476 0)COMMENT #17=(CRSite (CStringList) "AcyI" "grcgyc" 3 0 12 385 0 438 0 5210 707 0COMMENT 1029 0 2638 0 3138 0 3191 0 3274 0 3460 0 4907 0 7185 0)COMMENT #18=(CRSite (CStringList) "AflII" "cttaag" 2 0 3 3 0 908 0 56370)COMMENT #19=(CRSite (CStringList) "AflIII" "acrygt" 2 0 3 241 0 2861 04402 0)COMMENT #20=(CRSite (CStringList) "AgeI" "accggt" 2 0 1 3616 0)COMMENT #21=(CRSite (CStringList) "AluI" "agct" 3 0 37 148 0 880 0 924 01071 0COMMENT 1302 0 1371 0 1480 0 1700 0 1876 0 1924 0 2070 0 2691 0 27960 3582COMMENT 0 3649 0 3682 0 3754 0 3787 0 4003 0 4051 0 4162 0 4336 04447 0COMMENT 4723 0 5112 0 5214 0 5396 0 5555 0 5609 0 5653 0 5923 0 60130 6059COMMENT 0 6316 0 6837 0 6937 0 7000 0)COMMENT #22=(CRSite (CStringList) "Alw44I" "gtgcac" 2 0 4 45 0 4666 06069 0COMMENT 7315 0)COMMENT #23=(CRSite (CStringList) "AlwI" "ggatc" 10 11 26 25 0 28 1 978 11401 0COMMENT 1923 0 2376 1 2410 0 2592 1 2626 1 2966 1 2979 0 3596 1 41231 4322COMMENT 0 5027 0 5310 0 5367 0 5707 1 6316 1 6402 1 6404 0 6500 16501 0COMMENT 6964 1 7281 0 7285 1)

Page 4: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #24=(CRSite (CStringList) "AlwNI" "cagnnnctg" 7 0 4 93 0 1843 01927 0COMMENT 6171 0) #25=(CRSite (CStringList) "AosI" "tgcgca" 4 0 1 68700)COMMENT #26=(CRSite (CStringList) "ApaI" "gggccc" 6 0 1 2622 0)COMMENT #27=(CRSite (CStringList) "ApoI" "raatty" 2 0 7 140 0 1148 0 12350 2560COMMENT 0 2567 0 4349 0 4476 0)COMMENT #28=(CRSite (CStringList) "AscI" "ggcgcgcc" 3 0 0)COMMENT #29=(CRSite (CStringList) "AseI" "attaat" 3 0 3 270 0 3023 0 68200)COMMENT #30=(CRSite (CStringList) "AsnI" "attaat" 3 0 3 270 0 3023 0 68200)COMMENT #31=(CRSite (CStringList) "Asp700" "gaannnnttc" 6 0 2 1235 0 72470)COMMENT #32=(CRSite (CStringList) "Asp718" "ggtacc" 2 0 1 5183 0)COMMENT #33=(CRSite (CStringList) "AspEI" "gacnnnnngtc" 7 0 1 6648 0)COMMENT #34=(CRSite (CStringList) "AspHI" "gwgcwc" 6 0 9 49 0 882 0 10730 4238COMMENT 0 4670 0 5611 0 6073 0 7234 0 7319 0)COMMENT #35=(CRSite (CStringList) "AspI" "gacnnngtc" 5 0 0)COMMENT #36=(CRSite (CStringList) "AsuII" "ttcgaa" 3 0 0)COMMENT #37=(CRSite (CStringList) "AvaII" "ggwcc" 2 0 6 2327 0 4285 04361 0COMMENT 4945 0 6786 0 7008 0)COMMENT #38=(CRSite (CStringList) "AviII" "tgcgca" 4 0 1 6870 0)COMMENT #39=(CRSite (CStringList) "AvrII" "cctagg" 2 0 0)COMMENT #40=(CRSite (CStringList) "BanI" "ggyrcc" 2 0 6 728 0 1028 0 34810 3664COMMENT 0 5183 0 6596 0)COMMENT #41=(CRSite (CStringList) "BanII" "grgcyc" 6 0 5 882 0 1073 02622 0COMMENT 4810 0 5611 0) #42=(CRSite (CStringList) "BbrPI" "cacgtg" 40 0)COMMENT #43=(CRSite (CStringList) "BbsI" "gaagac" 9 13 2 4985 1 5285 0)COMMENT #44=(CRSite (CStringList) "BbvI" "gcagc" 14 18 27 200 1 836 01736 0COMMENT 1757 0 1810 0 1813 0 1885 0 3774 1 3880 0 4164 0 4171 0 41971 4200COMMENT 1 4525 1 4781 1 4857 1 4953 1 5121 0 5223 0 5542 1 5764 06084 1COMMENT 6174 0 6177 0 6383 0 6686 1 7077 0)COMMENT #45=(CRSite (CStringList) "BcgI" "cgannnnnntgc" 25 23 2 3753 07187 0)COMMENT #46=(CRSite (CStringList) "BclI" "tgatca" 2 0 0)COMMENT #47=(CRSite (CStringList) "BfaI" "ctag" 2 0 25 263 0 893 0 979 01020 0

Page 5: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 1157 0 1167 0 1303 0 1986 0 2627 0 2650 0 2735 0 2793 0 29680 3608COMMENT 0 4426 0 5073 0 5136 0 5397 0 5529 0 5622 0 5708 0 5749 06250 0COMMENT 6503 0 6838 0)COMMENT #48=(CRSite (CStringList) "BfrI" "cttaag" 2 0 3 3 0 908 0 5637 0)COMMENT #49=(CRSite (CStringList) "BglI" "gccnnnnnggc" 8 0 7 353 0 475 0546 0COMMENT 3106 0 3228 0 3299 0 6768 0)COMMENT #50=(CRSite (CStringList) "BglII" "agatct" 2 0 4 25 0 864 0 52190 5593COMMENT 0) #51=(CRSite (CStringList) "BlnI" "cctagg" 2 0 0)COMMENT #52=(CRSite (CStringList) "BmyI" "gdgchc" 6 0 17 49 0 882 0 955 01073 0COMMENT 2622 0 3669 0 3798 0 4047 0 4238 0 4670 0 4810 0 4823 0 56110 5684COMMENT 0 6073 0 7234 0 7319 0)COMMENT #53=(CRSite (CStringList) "BpmI" "ctggag" 23 21 5 1581 0 1862 14073 0COMMENT 4313 0 6718 1)COMMENT #54=(CRSite (CStringList) "Bpu1102I" "gctnagc" 3 0 0)COMMENT #55=(CRSite (CStringList) "BpuAI" "gaagac" 9 13 2 4985 1 5285 0)COMMENT #56=(CRSite (CStringList) "BsaAI" "yacgtr" 4 0 2 603 0 3356 0)COMMENT #57=(CRSite (CStringList) "BsaBI" "gatnnnnatc" 6 0 0)COMMENT #58=(CRSite (CStringList) "BsaHI" "grcgyc" 3 0 12 385 0 438 0 5210 707COMMENT 0 1029 0 2638 0 3138 0 3191 0 3274 0 3460 0 4907 0 7185 0)COMMENT #59=(CRSite (CStringList) "BsaI" "ggtctc" 8 12 4 852 0 5062 15581 0COMMENT 6709 1)COMMENT #60=(CRSite (CStringList) "BsaJI" "ccnngg" 2 0 26 623 0 873 01249 0COMMENT 1472 0 1647 0 1708 0 1927 0 1976 0 2321 0 2708 0 2926 0 33760 3627COMMENT 0 3657 0 3797 0 3960 0 3984 0 4039 0 4761 0 4833 0 4865 04957 0COMMENT 5349 0 5355 0 5602 0 5915 0)COMMENT #61=(CRSite (CStringList) "BsaWI" "wccggw" 2 0 6 3616 0 4416 05561 0COMMENT 5961 0 6108 0 6939 0)COMMENT #62=(CRSite (CStringList) "BseAI" "tccgga" 2 0 1 5561 0)COMMENT #63=(CRSite (CStringList) "BsgI" "gtgcag" 23 21 6 1688 0 1817 02509 0COMMENT 3757 1 3854 0 4178 0)COMMENT #64=(CRSite (CStringList) "BsiEI" "cgrycg" 5 0 9 12 0 1538 0 15420 2986COMMENT 0 3621 0 5066 0 6095 0 7018 0 7167 0)

Page 6: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #65=(CRSite (CStringList) "BsiHKAI" "gwgcwc" 6 0 9 49 0 882 01073 0COMMENT 4238 0 4670 0 5611 0 6073 0 7234 0 7319 0)COMMENT #66=(CRSite (CStringList) "BsiWI" "cgtacg" 2 0 0)COMMENT #67=(CRSite (CStringList) "BsiYI" "ccnnnnnnngg" 8 0 24 312 0 8430 1038COMMENT 0 1565 0 1897 0 2650 0 2709 0 2981 0 3065 0 3798 0 3961 04311 0COMMENT 4647 0 4698 0 4797 0 4866 0 4958 0 4969 0 5355 0 5383 0 57770 5795COMMENT 0 5961 0 6240 0)COMMENT #68=(CRSite (CStringList) "BslI" "ccnnnnnnngg" 8 0 24 312 0 843 01038 0COMMENT 1565 0 1897 0 2650 0 2709 0 2981 0 3065 0 3798 0 3961 0 43110 4647COMMENT 0 4698 0 4797 0 4866 0 4958 0 4969 0 5355 0 5383 0 5777 05795 0COMMENT 5961 0 6240 0)COMMENT #69=(CRSite (CStringList) "BsmAI" "gtctc" 7 11 11 697 0 852 02364 1COMMENT 2370 1 2905 1 3450 0 4623 0 5062 1 5581 0 6709 1 7485 0)COMMENT #70=(CRSite (CStringList) "BsmFI" "gggac" 16 20 17 438 0 589 0757 0COMMENT 1054 0 1379 0 1592 0 2057 0 2340 0 2601 0 3191 0 3342 0 35100 4374COMMENT 0 4747 0 4907 1 4918 0 5263 0)COMMENT #71=(CRSite (CStringList) "BsmI" "gaatgc" 8 6 1 1987 0)COMMENT #72=(CRSite (CStringList) "Bsp120I" "gggccc" 2 0 1 2618 0)COMMENT #73=(CRSite (CStringList) "Bsp1286I" "gdgchc" 6 0 17 49 0 882 0955 0COMMENT 1073 0 2622 0 3669 0 3798 0 4047 0 4238 0 4670 0 4810 0 48230 5611COMMENT 0 5684 0 6073 0 7234 0 7319 0)COMMENT #74=(CRSite (CStringList) "BspDI" "atcgat" 3 0 2 4452 0 5047 0)COMMENT #75=(CRSite (CStringList) "BspEI" "tccgga" 2 0 1 5561 0)COMMENT #76=(CRSite (CStringList) "BspHI" "tcatga" 2 0 2 6475 0 7483 0)COMMENT #77=(CRSite (CStringList) "BspMI" "acctgc" 11 15 0)COMMENT #78=(CRSite (CStringList) "BspWI" "gcnnnnnnngc" 8 0 42 210 0 3530 475 0COMMENT 507 0 546 0 639 0 663 0 833 0 934 0 1108 0 1531 0 1543 01740 0COMMENT 1829 0 1846 0 2104 0 2414 0 2425 0 2756 0 3106 0 3228 0 32600 3299COMMENT 0 3392 0 3416 0 3720 0 3780 0 3793 0 3837 0 3846 0 4665 04787 0COMMENT 4791 0 4883 0 4975 0 4987 0 5118 0 5127 0 5663 0 5808 0 63800 6768

Page 7: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0) #79=(CRSite (CStringList) "BsrBI" "gagcgg" 4 4 2 2624 17489 0)COMMENT #80=(CRSite (CStringList) "BsrDI" "gcaatg" 9 7 3 4704 1 6709 06883 1)COMMENT #81=(CRSite (CStringList) "BsrFI" "rccggy" 2 0 6 1537 0 2660 03616 0COMMENT 3779 0 4969 0 6728 0)COMMENT #82=(CRSite (CStringList) "BsrGI" "tgtaca" 2 0 1 4338 0)COMMENT #83=(CRSite (CStringList) "BsrI" "actgg" 7 5 22 87 1 558 1 847 01136 0COMMENT 1367 0 2601 1 3311 1 4240 1 4498 0 4699 0 5169 1 5257 0 54031 5576COMMENT 0 6163 0 6176 0 6288 1 6694 1 6812 1 6855 1 7124 0 7294 1)COMMENT #84=(CRSite (CStringList) "BssHII" "gcgcgc" 2 0 1 1102 0)COMMENT #85=(CRSite (CStringList) "Bst1107I" "gtatac" 4 0 0)COMMENT #86=(CRSite (CStringList) "BstBI" "ttcgaa" 3 0 0)COMMENT #87=(CRSite (CStringList) "BstEII" "ggtnacc" 2 0 1 2953 0)COMMENT #88=(CRSite (CStringList) "BstNI" "ccwgg" 3 0 26 353 0 546 0 8740 1250COMMENT 0 1325 0 1560 0 1880 0 1892 0 1928 0 2032 0 3106 0 3299 03674 0COMMENT 3799 0 3911 0 3986 0 4040 0 4609 0 4891 0 5132 0 5350 0 53560 5603COMMENT 0 5783 0 5904 0 5917 0)COMMENT #89=(CRSite (CStringList) "BstUI" "cgcg" 3 0 23 133 0 221 0 243 0323 0COMMENT 829 0 1104 0 1224 0 1544 0 2658 0 2949 0 2951 0 2988 0 30760 3957COMMENT 0 4275 0 4902 0 4959 0 4990 0 5802 0 6383 0 6713 0 7206 07538 0)COMMENT #90=(CRSite (CStringList) "BstXI" "ccannnnnntgg" 9 0 0)COMMENT #91=(CRSite (CStringList) "BstYI" "rgatcy" 2 0 20 25 0 864 0 9830 2381COMMENT 0 2597 0 2631 0 2971 0 3601 0 4128 0 5019 0 5219 0 5302 05593 0COMMENT 5712 0 6396 0 6407 0 6493 0 6505 0 7273 0 7290 0)COMMENT #92=(CRSite (CStringList) "Bsu36I" "cctnagg" 3 0 1 5179 0)COMMENT #93=(CRSite (CStringList) "CelII" "gctnagc" 3 0 0)COMMENT #94=(CRSite (CStringList) "CfoI" "gcgc" 4 0 26 133 0 213 0 829 01031 0COMMENT 1104 0 1106 0 1546 0 1745 0 1834 0 2419 0 2660 0 2951 0 36130 3918COMMENT 0 3959 0 4275 0 4902 0 5935 0 6002 0 6102 0 6276 0 6385 06778 0COMMENT 6871 0 7208 0 7540 0)COMMENT #95=(CRSite (CStringList) "Cfr10I" "rccggy" 2 0 6 1537 0 2660 03616 0COMMENT 3779 0 4969 0 6728 0)

Page 8: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #96=(CRSite (CStringList) "Csp45I" "ttcgaa" 3 0 0)COMMENT #97=(CRSite (CStringList) "Csp6I" "gtac" 2 0 28 56 0 226 0 481 0506 0COMMENT 561 0 594 0 645 0 802 0 840 0 1139 0 1766 0 2252 0 2483 02613 0COMMENT 2965 0 3234 0 3259 0 3314 0 3347 0 3398 0 3555 0 4057 0 43390 4430COMMENT 0 5184 0 5400 0 5569 0 7127 0)COMMENT #98=(CRSite (CStringList) "DdeI" "ctnag" 2 0 18 52 0 122 0 193 0868 0COMMENT 989 0 1405 0 1817 0 4232 0 4250 0 5007 0 5179 0 5223 0 55970 5718COMMENT 0 6030 0 6439 0 6605 0 7145 0)COMMENT #99=(CRSite (CStringList) "DpnI" "gatc" 3 0 40 19 0 27 0 35 0 8660 985COMMENT 0 1221 0 1395 0 1410 0 1550 0 1917 0 2383 0 2404 0 2599 02633 0COMMENT 2973 0 3603 0 4130 0 4278 0 4316 0 5021 0 5065 0 5221 0 52960 5304COMMENT 0 5361 0 5595 0 5714 0 6323 0 6398 0 6409 0 6417 0 6495 06507 0COMMENT 6612 0 6953 0 6971 0 7017 0 7275 0 7292 0 7328 0)COMMENT #100=(CRSite (CStringList) "DpnII" "gatc" 1 0 40 17 0 25 0 33 0864 0COMMENT 983 0 1219 0 1393 0 1408 0 1548 0 1915 0 2381 0 2402 0 25970 2631COMMENT 0 2971 0 3601 0 4128 0 4276 0 4314 0 5019 0 5063 0 5219 05294 0COMMENT 5302 0 5359 0 5593 0 5712 0 6321 0 6396 0 6407 0 6415 06493 0COMMENT 6505 0 6610 0 6951 0 6969 0 7015 0 7273 0 7290 0 7326 0)COMMENT #101=(CRSite (CStringList) "DraI" "tttaaa" 4 0 5 2459 0 5236 06514 0COMMENT 6533 0 7225 0)COMMENT #102=(CRSite (CStringList) "DraII" "rggnccy" 3 0 2 2327 0 4361 0)COMMENT #103=(CRSite (CStringList) "DraIII" "cacnnngtg" 7 0 2 2414 0 54650)COMMENT #104=(CRSite (CStringList) "DrdI" "gacnnnnnngtc" 8 0 1 5863 0)COMMENT #105=(CRSite (CStringList) "DsaI" "ccrygg" 2 0 6 623 0 3376 03627 0COMMENT 4761 0 4833 0 4957 0)COMMENT #106=(CRSite (CStringList) "DsaV" "ccngg" 1 0 35 351 0 544 0 8720 1248COMMENT 0 1323 0 1558 0 1878 0 1890 0 1926 0 2030 0 2615 0 2708 03104 0COMMENT 3297 0 3656 0 3672 0 3797 0 3909 0 3984 0 4038 0 4310 04607 0

Page 9: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 4730 0 4889 0 5130 0 5348 0 5354 0 5488 0 5601 0 5781 05902 0COMMENT 5915 0 6133 0 6829 0 7180 0)COMMENT #107=(CRSite (CStringList) "EaeI" "yggccr" 2 0 6 1535 0 1539 02983 0COMMENT 3700 0 4089 0 7036 0)COMMENT #108=(CRSite (CStringList) "EagI" "cggccg" 2 0 3 1535 0 1539 02983 0)COMMENT #109=(CRSite (CStringList) "Eam1105I" "gacnnnnngtc" 7 0 1 6648 0)COMMENT #110=(CRSite (CStringList) "EarI" "ctcttc" 8 11 4 1493 1 1654 14989 0COMMENT 7443 0)COMMENT #111=(CRSite (CStringList) "Ecl136II" "gagctc" 4 0 3 880 0 1071 05609 0)COMMENT #112=(CRSite (CStringList) "EclXI" "cggccg" 2 0 3 1535 0 1539 02983 0)COMMENT #113=(CRSite (CStringList) "Eco47III" "agcgct" 4 0 1 3612 0)COMMENT #114=(CRSite (CStringList) "Eco57I" "ctgaag" 23 21 8 1118 0 13691 1537COMMENT 1 3782 0 3826 1 4025 0 6303 0 7315 1)COMMENT #115=(CRSite (CStringList) "EcoNI" "cctnnnnnagg" 6 0 1 1563 0)COMMENT #116=(CRSite (CStringList) "EcoO109I" "rggnccy" 3 0 2 2327 0 43610)COMMENT #117=(CRSite (CStringList) "EcoRII" "ccwgg" 1 0 26 351 0 544 0872 0COMMENT 1248 0 1323 0 1558 0 1878 0 1890 0 1926 0 2030 0 3104 03297 0COMMENT 3672 0 3797 0 3909 0 3984 0 4038 0 4607 0 4889 0 5130 05348 0COMMENT 5354 0 5601 0 5781 0 5902 0 5915 0)COMMENT #118=(CRSite (CStringList) "EcoRV" "gatatc" 4 0 3 4441 0 5288 05367 0)COMMENT #119=(CRSite (CStringList) "Esp3I" "cgtctc" 8 12 0)COMMENT #120=(CRSite (CStringList) "EspI" "gctnagc" 3 0 0)COMMENT #121=(CRSite (CStringList) "Fnu4HI" "gcngc" 3 0 46 74 0 214 0 8250 1126COMMENT 0 1535 0 1542 0 1725 0 1746 0 1799 0 1802 0 1874 0 2641 02983 0COMMENT 2986 0 3788 0 3847 0 3869 0 4153 0 4160 0 4211 0 4214 04308 0COMMENT 4539 0 4779 0 4795 0 4871 0 4960 0 4967 0 4979 0 5034 05110 0COMMENT 5212 0 5525 0 5556 0 5753 0 5800 0 5955 0 6098 0 6163 06166 0COMMENT 6372 0 6700 0 7039 0 7066 0 7161 0 7390 0)COMMENT #122=(CRSite (CStringList) "FnuDII" "cgcg" 3 0 23 133 0 221 0 2430 323

Page 10: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0 829 0 1104 0 1224 0 1544 0 2658 0 2949 0 2951 0 2988 03076 0COMMENT 3957 0 4275 0 4902 0 4959 0 4990 0 5802 0 6383 0 6713 07206 0COMMENT 7538 0)COMMENT #123=(CRSite (CStringList) "FokI" "ggatg" 15 19 12 1365 1 2047 02433 1COMMENT 3656 1 4022 1 5395 0 5492 0 5496 0 5545 1 6614 1 6795 17082 1)COMMENT #124=(CRSite (CStringList) "FspI" "tgcgca" 4 0 1 6870 0)COMMENT #125=(CRSite (CStringList) "HaeII" "rgcgcy" 6 0 3 1032 0 3614 06003 0)COMMENT #126=(CRSite (CStringList) "HaeIII" "ggcc" 3 0 33 232 0 347 0 5400 1248COMMENT 0 1328 0 1537 0 1541 0 1772 0 2338 0 2620 0 2654 0 2664 02985 0COMMENT 3100 0 3293 0 3702 0 3802 0 4091 0 4203 0 4639 0 4931 04962 0COMMENT 4981 0 5033 0 5354 0 5547 0 5770 0 5781 0 5799 0 6233 06691 0COMMENT 6771 0 7038 0)COMMENT #127=(CRSite (CStringList) "HgaI" "gacgc" 11 16 13 8 0 789 0 10880 1182COMMENT 1 1737 1 1765 0 2646 0 3542 0 4691 0 4979 1 5866 0 6444 07174 1)COMMENT #128=(CRSite (CStringList) "HgiAI" "gwgcwc" 6 0 9 49 0 882 0 10730 4238COMMENT 0 4670 0 5611 0 6073 0 7234 0 7319 0)COMMENT #129=(CRSite (CStringList) "HhaI" "gcgc" 4 0 26 133 0 213 0 829 01031 0COMMENT 1104 0 1106 0 1546 0 1745 0 1834 0 2419 0 2660 0 2951 03613 0COMMENT 3918 0 3959 0 4275 0 4902 0 5935 0 6002 0 6102 0 6276 06385 0COMMENT 6778 0 6871 0 7208 0 7540 0)COMMENT #130=(CRSite (CStringList) "HincII" "gtyrac" 4 0 4 13 0 247 02945 0COMMENT 5057 0)COMMENT #131=(CRSite (CStringList) "HindII" "gtyrac" 4 0 4 13 0 247 02945 0COMMENT 5057 0)COMMENT #132=(CRSite (CStringList) "HinfI" "gantc" 2 0 14 186 0 673 0 9680 1086COMMENT 0 1310 0 1887 0 2020 0 2093 0 3426 0 4894 0 5014 0 5697 06126 0COMMENT 6643 0)COMMENT #133=(CRSite (CStringList) "HinP1I" "gcgc" 2 0 26 131 0 211 0 8270 1029

Page 11: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0 1102 0 1104 0 1544 0 1743 0 1832 0 2417 0 2658 0 2949 03611 0COMMENT 3916 0 3957 0 4273 0 4900 0 5933 0 6000 0 6100 0 6274 06383 0COMMENT 6776 0 6869 0 7206 0 7538 0)COMMENT #134=(CRSite (CStringList) "HpaI" "gttaac" 4 0 1 2945 0)COMMENT #135=(CRSite (CStringList) "HpaII" "ccgg" 2 0 23 1538 0 2616 02661 0COMMENT 2710 0 3617 0 3657 0 3720 0 3780 0 4311 0 4417 0 4731 04970 0COMMENT 5490 0 5562 0 5962 0 6109 0 6135 0 6325 0 6729 0 6763 06830 0COMMENT 6940 0 7182 0)COMMENT #136=(CRSite (CStringList) "HphI" "ggtga" 14 13 16 639 0 1146 02280 1COMMENT 2872 1 2965 0 3392 0 3643 0 3646 1 3976 0 4000 0 4129 06491 1COMMENT 6718 1 7134 0 7340 1 7375 0)COMMENT #137=(CRSite (CStringList) "ItaI" "gcngc" 3 0 46 74 0 214 0 825 01126 0COMMENT 1535 0 1542 0 1725 0 1746 0 1799 0 1802 0 1874 0 2641 02983 0COMMENT 2986 0 3788 0 3847 0 3869 0 4153 0 4160 0 4211 0 4214 04308 0COMMENT 4539 0 4779 0 4795 0 4871 0 4960 0 4967 0 4979 0 5034 05110 0COMMENT 5212 0 5525 0 5556 0 5753 0 5800 0 5955 0 6098 0 6163 06166 0COMMENT 6372 0 6700 0 7039 0 7066 0 7161 0 7390 0)COMMENT #138=(CRSite (CStringList) "KasI" "ggcgcc" 2 0 1 1028 0)COMMENT #139=(CRSite (CStringList) "KpnI" "ggtacc" 6 0 1 5187 0)COMMENT #140=(CRSite (CStringList) "Ksp632I" "ctcttc" 8 11 4 1493 1 16541 4989COMMENT 0 7443 0) #141=(CRSite (CStringList) "KspI" "ccgcgg" 5 0 14960 0)COMMENT #142=(CRSite (CStringList) "MaeI" "ctag" 2 0 25 263 0 893 0 979 01020 0COMMENT 1157 0 1167 0 1303 0 1986 0 2627 0 2650 0 2735 0 2793 02968 0COMMENT 3608 0 4426 0 5073 0 5136 0 5397 0 5529 0 5622 0 5708 05749 0COMMENT 6250 0 6503 0 6838 0)COMMENT #143=(CRSite (CStringList) "MaeII" "acgt" 2 0 21 385 0 397 0 4380 521 0COMMENT 602 0 707 0 3138 0 3150 0 3191 0 3274 0 3355 0 3460 0 36930 3906COMMENT 0 4077 0 4654 0 4907 0 4920 0 6458 0 6874 0 7247 0)

Page 12: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #144=(CRSite (CStringList) "MaeIII" "gtnac" 1 0 25 324 0 411 0760 0 965COMMENT 0 974 0 2737 0 2864 0 2953 0 3077 0 3164 0 3513 0 3811 04300 0COMMENT 5171 0 5455 0 5694 0 5703 0 6111 0 6174 0 6290 0 6573 06904 0COMMENT 6962 0 7115 0 7303 0)COMMENT #145=(CRSite (CStringList) "MamI" "gatnnnnatc" 6 0 0)COMMENT #146=(CRSite (CStringList) "MboI" "gatc" 1 0 40 17 0 25 0 33 0864 0 983COMMENT 0 1219 0 1393 0 1408 0 1548 0 1915 0 2381 0 2402 0 2597 02631 0COMMENT 2971 0 3601 0 4128 0 4276 0 4314 0 5019 0 5063 0 5219 05294 0COMMENT 5302 0 5359 0 5593 0 5712 0 6321 0 6396 0 6407 0 6415 06493 0COMMENT 6505 0 6610 0 6951 0 6969 0 7015 0 7273 0 7290 0 7326 0)COMMENT #147=(CRSite (CStringList) "MboII" "gaaga" 14 13 22 195 0 1411 01510 0COMMENT 1543 1 1671 0 2102 0 2363 0 2366 0 3871 1 3916 1 3919 14114 0COMMENT 4976 1 4985 1 5290 0 5436 0 6265 0 6417 0 6488 1 7243 17321 1COMMENT 7430 1)COMMENT #148=(CRSite (CStringList) "McrI" "cgrycg" 5 0 9 12 0 1538 0 15420 2986COMMENT 0 3621 0 5066 0 6095 0 7018 0 7167 0)COMMENT #149=(CRSite (CStringList) "MfeI" "caattg" 2 0 2 174 0 1582 0)COMMENT #150=(CRSite (CStringList) "MluI" "acgcgt" 2 0 1 241 0)COMMENT #151=(CRSite (CStringList) "MluNI" "tggcca" 4 0 0)COMMENT #152=(CRSite (CStringList) "MnlI" "cctc" 12 11 55 108 1 804 1 9240 998COMMENT 0 1059 1 1108 1 1113 1 1156 1 1444 0 1488 1 1556 1 1559 11569 1COMMENT 1812 1 1822 1 2213 1 2316 1 2321 0 2678 0 2740 1 2969 03557 1COMMENT 3637 1 3718 1 3724 1 3818 0 3955 1 3967 1 4018 1 4138 14351 1COMMENT 4473 0 4603 0 4621 1 4760 0 4943 0 4992 0 5016 0 5047 05070 0COMMENT 5141 1 5144 1 5147 1 5150 1 5188 0 5506 1 5653 0 5727 05863 1COMMENT 5937 0 6187 1 6587 1 6668 1 6815 0 7021 0)COMMENT #153=(CRSite (CStringList) "MroI" "tccgga" 2 0 1 5561 0)COMMENT #154=(CRSite (CStringList) "MscI" "tggcca" 4 0 0)COMMENT #155=(CRSite (CStringList) "MseI" "ttaa" 2 0 34 4 0 82 0 144 0270 0 909

Page 13: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0 1202 0 1243 0 1273 0 1319 0 2055 0 2072 0 2084 0 2169 02234 0COMMENT 2458 0 2714 0 2752 0 2787 0 2944 0 3023 0 4408 0 4503 04544 0COMMENT 5190 0 5235 0 5638 0 6461 0 6513 0 6518 0 6532 0 6585 06820 0COMMENT 6859 0 7224 0)COMMENT #156=(CRSite (CStringList) "MslI" "caynnnnrtg" 6 0 11 628 0 19700 3381COMMENT 0 3629 0 3659 0 3809 0 3986 0 4115 0 6900 0 7059 0 7418 0)COMMENT #157=(CRSite (CStringList) "MspA1I" "cmgckg" 4 0 7 4794 0 4943 04959 0COMMENT 5214 0 6097 0 6342 0 7283 0)COMMENT #158=(CRSite (CStringList) "MspI" "ccgg" 2 0 23 1538 0 2616 02661 0COMMENT 2710 0 3617 0 3657 0 3720 0 3780 0 4311 0 4417 0 4731 04970 0COMMENT 5490 0 5562 0 5962 0 6109 0 6135 0 6325 0 6729 0 6763 06830 0COMMENT 6940 0 7182 0)COMMENT #159=(CRSite (CStringList) "MunI" "caattg" 2 0 2 174 0 1582 0)COMMENT #160=(CRSite (CStringList) "MvaI" "ccwgg" 3 0 26 353 0 546 0 8740 1250COMMENT 0 1325 0 1560 0 1880 0 1892 0 1928 0 2032 0 3106 0 3299 03674 0COMMENT 3799 0 3911 0 3986 0 4040 0 4609 0 4891 0 5132 0 5350 05356 0COMMENT 5603 0 5783 0 5904 0 5917 0)COMMENT #161=(CRSite (CStringList) "MvnI" "cgcg" 3 0 23 133 0 221 0 243 0323 0COMMENT 829 0 1104 0 1224 0 1544 0 2658 0 2949 0 2951 0 2988 0 30760 3957COMMENT 0 4275 0 4902 0 4959 0 4990 0 5802 0 6383 0 6713 0 7206 07538 0)COMMENT #162=(CRSite (CStringList) "MwoI" "gcnnnnnnngc" 8 0 42 210 0 3530 475 0COMMENT 507 0 546 0 639 0 663 0 833 0 934 0 1108 0 1531 0 1543 01740 0COMMENT 1829 0 1846 0 2104 0 2414 0 2425 0 2756 0 3106 0 3228 03260 0COMMENT 3299 0 3392 0 3416 0 3720 0 3780 0 3793 0 3837 0 3846 04665 0COMMENT 4787 0 4791 0 4883 0 4975 0 4987 0 5118 0 5127 0 5663 05808 0COMMENT 6380 0 6768 0)COMMENT #163=(CRSite (CStringList) "NaeI" "gccggc" 4 0 3 1539 0 2662 04971 0)COMMENT #164=(CRSite (CStringList) "NarI" "ggcgcc" 3 0 1 1029 0)

Page 14: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #165=(CRSite (CStringList) "NciI" "ccsgg" 3 0 9 2617 0 2710 03658 0COMMENT 4312 0 4732 0 5490 0 6135 0 6831 0 7182 0)COMMENT #166=(CRSite (CStringList) "NdeI" "catatg" 3 0 2 497 0 3250 0)COMMENT #167=(CRSite (CStringList) "NdeII" "gatc" 1 0 40 17 0 25 0 33 0864 0COMMENT 983 0 1219 0 1393 0 1408 0 1548 0 1915 0 2381 0 2402 0 25970 2631COMMENT 0 2971 0 3601 0 4128 0 4276 0 4314 0 5019 0 5063 0 5219 05294 0COMMENT 5302 0 5359 0 5593 0 5712 0 6321 0 6396 0 6407 0 6415 06493 0COMMENT 6505 0 6610 0 6951 0 6969 0 7015 0 7273 0 7290 0 7326 0)COMMENT #168=(CRSite (CStringList) "NgoMI" "gccggc" 2 0 3 1537 0 2660 04969 0)COMMENT #169=(CRSite (CStringList) "NheI" "gctagc" 2 0 1 3607 0)COMMENT #170=(CRSite (CStringList) "NlaIII" "catg" 5 0 26 183 0 567 0 6270 2810COMMENT 0 2865 0 3013 0 3320 0 3380 0 3631 0 3865 0 3895 0 4090 04285 0COMMENT 4330 0 4406 0 4562 0 5085 0 5478 0 5546 0 5759 0 6479 06970 0COMMENT 6980 0 7058 0 7094 0 7487 0)COMMENT #171=(CRSite (CStringList) "NlaIV" "ggnncc" 4 0 23 730 0 899 01030 0COMMENT 2328 0 2329 0 2620 0 2665 0 2973 0 3483 0 3666 0 4204 04362 0COMMENT 4415 0 4421 0 5185 0 5628 0 5787 0 5826 0 6598 0 6692 06733 0COMMENT 6944 0 7534 0)COMMENT #172=(CRSite (CStringList) "NotI" "gcggccgc" 3 0 1 2983 0)COMMENT #173=(CRSite (CStringList) "NruI" "tcgcga" 4 0 2 221 0 1224 0)COMMENT #174=(CRSite (CStringList) "NsiI" "atgcat" 6 0 1 3015 0)COMMENT #175=(CRSite (CStringList) "NspI" "rcatgy" 6 0 3 2865 0 4406 05759 0)COMMENT #176=(CRSite (CStringList) "NspV" "ttcgaa" 3 0 0)COMMENT #177=(CRSite (CStringList) "PacI" "ttaattaa" 6 0 0)COMMENT #178=(CRSite (CStringList) "PaeR7I" "ctcgag" 2 0 1 2960 0)COMMENT #179=(CRSite (CStringList) "PflMI" "ccannnnntgg" 8 0 1 4698 0)COMMENT #180=(CRSite (CStringList) "PinAI" "accggt" 2 0 1 3616 0)COMMENT #181=(CRSite (CStringList) "PleI" "gagtc" 10 11 8 667 1 962 11080 1COMMENT 3420 1 5022 0 5691 1 6134 0 6637 1)COMMENT #182=(CRSite (CStringList) "PmaCI" "cacgtg" 4 0 0)COMMENT #183=(CRSite (CStringList) "PmeI" "gtttaaac" 5 0 0)COMMENT #184=(CRSite (CStringList) "PmlI" "cacgtg" 4 0 0)COMMENT #185=(CRSite (CStringList) "Ppu10I" "atgcat" 2 0 1 3011 0)COMMENT #186=(CRSite (CStringList) "PpuMI" "rggwccy" 3 0 2 2327 0 4361 0)

Page 15: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #187=(CRSite (CStringList) "Psp1406I" "aacgtt" 3 0 2 6874 0 72470)COMMENT #188=(CRSite (CStringList) "PvuI" "cgatcg" 5 0 2 5066 0 7018 0)COMMENT #189=(CRSite (CStringList) "PvuII" "cagctg" 4 0 1 5214 0)COMMENT #190=(CRSite (CStringList) "RcaI" "tcatga" 2 0 2 6475 0 7483 0)COMMENT #191=(CRSite (CStringList) "RsaI" "gtac" 3 0 28 57 0 227 0 482 0507 0COMMENT 562 0 595 0 646 0 803 0 841 0 1140 0 1767 0 2253 0 2484 02614 0COMMENT 2966 0 3235 0 3260 0 3315 0 3348 0 3399 0 3556 0 4058 04340 0COMMENT 4431 0 5185 0 5401 0 5570 0 7128 0)COMMENT #192=(CRSite (CStringList) "RsrII" "cggwccg" 3 0 0)COMMENT #193=(CRSite (CStringList) "SacI" "gagctc" 6 0 3 882 0 1073 05611 0)COMMENT #194=(CRSite (CStringList) "SacII" "ccgcgg" 5 0 1 4960 0)COMMENT #195=(CRSite (CStringList) "SalI" "gtcgac" 2 0 2 11 0 5055 0)COMMENT #196=(CRSite (CStringList) "SapI" "gctcttc" 9 12 1 1493 1)COMMENT #197=(CRSite (CStringList) "Sau3AI" "gatc" 1 0 40 17 0 25 0 33 0864 0COMMENT 983 0 1219 0 1393 0 1408 0 1548 0 1915 0 2381 0 2402 0 25970 2631COMMENT 0 2971 0 3601 0 4128 0 4276 0 4314 0 5019 0 5063 0 5219 05294 0COMMENT 5302 0 5359 0 5593 0 5712 0 6321 0 6396 0 6407 0 6415 06493 0COMMENT 6505 0 6610 0 6951 0 6969 0 7015 0 7273 0 7290 0 7326 0)COMMENT #198=(CRSite (CStringList) "Sau96I" "ggncc" 2 0 25 230 0 346 0539 0COMMENT 2327 0 2337 0 2618 0 2619 0 2653 0 2663 0 3099 0 3292 03801 0COMMENT 4202 0 4285 0 4361 0 4638 0 4930 0 4945 0 5031 0 5352 05546 0COMMENT 6690 0 6769 0 6786 0 7008 0)COMMENT #199=(CRSite (CStringList) "ScaI" "agtact" 4 0 2 2966 0 7128 0)COMMENT #200=(CRSite (CStringList) "ScrFI" "ccngg" 3 0 35 353 0 546 0 8740 1250COMMENT 0 1325 0 1560 0 1880 0 1892 0 1928 0 2032 0 2617 0 2710 03106 0COMMENT 3299 0 3658 0 3674 0 3799 0 3911 0 3986 0 4040 0 4312 04609 0COMMENT 4732 0 4891 0 5132 0 5350 0 5356 0 5490 0 5603 0 5783 05904 0COMMENT 5917 0 6135 0 6831 0 7182 0)COMMENT #201=(CRSite (CStringList) "SexAI" "accwggt" 2 0 0)COMMENT #202=(CRSite (CStringList) "SfaNI" "gcatc" 11 15 16 60 1 620 11455 0

Page 16: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 1849 0 1875 0 3373 1 3727 1 4005 0 4020 0 4119 0 5053 05567 0COMMENT 5852 0 6904 0 7095 1 7344 0)COMMENT #203=(CRSite (CStringList) "SfcI" "ctryag" 2 0 8 1350 0 2259 02426 0COMMENT 2742 0 5215 0 6020 0 6211 0 6889 0)COMMENT #204=(CRSite (CStringList) "SfiI" "ggccnnnnnggcc" 9 0 0)COMMENT #205=(CRSite (CStringList) "SfuI" "ttcgaa" 3 0 0)COMMENT #206=(CRSite (CStringList) "SgrAI" "crccggyg" 3 0 0)COMMENT #207=(CRSite (CStringList) "SnaBI" "tacgta" 4 0 2 603 0 3356 0)COMMENT #208=(CRSite (CStringList) "SnoI" "gtgcac" 2 0 4 45 0 4666 0 60690 7315COMMENT 0) #209=(CRSite (CStringList) "SpeI" "actagt" 2 0 1 262 0)COMMENT #210=(CRSite (CStringList) "SphI" "gcatgc" 6 0 0)COMMENT #211=(CRSite (CStringList) "SspBI" "tgtaca" 2 0 1 4338 0)COMMENT #212=(CRSite (CStringList) "SspI" "aatatt" 4 0 2 2729 0 7452 0)COMMENT #213=(CRSite (CStringList) "StuI" "aggcct" 4 0 0)COMMENT #214=(CRSite (CStringList) "StyI" "ccwwgg" 2 0 9 623 0 1472 01647 0COMMENT 1708 0 1976 0 2926 0 3376 0 3627 0 4865 0)COMMENT #215=(CRSite (CStringList) "SwaI" "atttaaat" 5 0 0)COMMENT #216=(CRSite (CStringList) "TaqI" "tcga" 2 0 18 12 0 1077 0 23890 2961COMMENT 0 3678 0 3972 0 3999 0 4014 0 4143 0 4356 0 4437 0 4452 05047 0COMMENT 5056 0 5062 0 5066 0 5855 0 7299 0)COMMENT #217=(CRSite (CStringList) "TfiI" "gawtc" 2 0 6 186 0 1310 0 18870 2020COMMENT 0 2093 0 4894 0)COMMENT #218=(CRSite (CStringList) "ThaI" "cgcg" 3 0 23 133 0 221 0 243 0323 0COMMENT 829 0 1104 0 1224 0 1544 0 2658 0 2949 0 2951 0 2988 0 30760 3957COMMENT 0 4275 0 4902 0 4959 0 4990 0 5802 0 6383 0 6713 0 7206 07538 0)COMMENT #219=(CRSite (CStringList) "Tru9I" "ttaa" 2 0 34 4 0 82 0 144 0270 0COMMENT 909 0 1202 0 1243 0 1273 0 1319 0 2055 0 2072 0 2084 0 21690 2234COMMENT 0 2458 0 2714 0 2752 0 2787 0 2944 0 3023 0 4408 0 4503 04544 0COMMENT 5190 0 5235 0 5638 0 6461 0 6513 0 6518 0 6532 0 6585 06820 0COMMENT 6859 0 7224 0)COMMENT #220=(CRSite (CStringList) "Tsp509I" "aatt" 1 0 37 140 0 174 0281 0COMMENT 1148 0 1214 0 1235 0 1270 0 1582 0 1595 0 1620 0 1778 01810 0

Page 17: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 2052 0 2059 0 2085 0 2126 0 2135 0 2161 0 2179 0 2198 02421 0COMMENT 2453 0 2538 0 2551 0 2560 0 2567 0 2715 0 2897 0 3034 04349 0COMMENT 4433 0 4476 0 4828 0 5263 0 6515 0 6821 0 7076 0)COMMENT #221=(CRSite (CStringList) "Tth111I" "gacnnngtc" 5 0 0)COMMENT #222=(CRSite (CStringList) "Van91I" "ccannnnntgg" 8 0 1 4698 0)COMMENT #223=(CRSite (CStringList) "XbaI" "tctaga" 2 0 1 2626 0)COMMENT #224=(CRSite (CStringList) "XcmI" "ccannnnnnnnntgg" 9 0 0)COMMENT #225=(CRSite (CStringList) "XhoI" "ctcgag" 2 0 1 2960 0)COMMENT #226=(CRSite (CStringList) "XhoII" "rgatcy" 2 0 20 25 0 864 0 9830 2381COMMENT 0 2597 0 2631 0 2971 0 3601 0 4128 0 5019 0 5219 0 5302 05593 0COMMENT 5712 0 6396 0 6407 0 6493 0 6505 0 7273 0 7290 0)COMMENT #227=(CRSite (CStringList) "XmaIII" "cggccg" 2 0 3 1535 0 1539 02983 0)COMMENT #228=(CRSite (CStringList) "XmnI" "gaannnnttc" 6 0 2 1235 0 72470))COMMENT (CObListCOMMENT #229=(CFSignal (CObList) "CMV-GFP" 51 0 0 2983 4353 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #230=(CFSignal (CObList) "Psi" 21 0 0 1076 1213 0 (CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #231=(CFSignal (CObList) "RRE" 21 0 0 1707 1910 0 (CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #232=(CFSignal (CObList) "shRNA cloning site" 21 0 0 2945 2960 0COMMENT (CStringList) (CStringList) 1 1 1 1 "")COMMENT #233=(CFSignal (CObList) "U6 Promotor" 29 0 0 2631 2944 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #234=(CFSignal (CObList) "5' LoxP" 21 0 0 2826 2859 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #235=(CFSignal (CObList) "3' LoxP" 21 0 0 4367 4400 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #236=(CFSignal (CObList) "WRE" 21 0 0 4456 4835 0 (CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #237=(CFSignal (CObList) "Lox replace for" 27 0 0 2481 2500 0COMMENT (CStringList) (CStringList) 1 1 1 1 "")COMMENT #238=(CFSignal (CObList) "Loop out for" 27 0 0 2708 2733 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")COMMENT #239=(CFSignal (CObList) "Loop out rev" 27 0 0 4538 4561 0(CStringList)COMMENT (CStringList) 1 1 1 1 "")

Page 18: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #240=(CFSignal (CObList) "Lox replace rev" 27 0 0 493 512 0COMMENT (CStringList) (CStringList) 1 1 1 1 "")COMMENT #241=(CFSignal (CObList) "Lox replace rev" 27 0 0 3246 3265 0COMMENT (CStringList) (CStringList) 1 1 1 1 "")) (CObList)(CObList)COMMENT (CObList) (CObList) (CObList) (CObList)COMMENT (CTextView 0COMMENT #242=(CGroupPar (CParagraph 0 (0 0) 1 2 0 0 180)COMMENT (CObjectListCOMMENT #243=(CRefLineParCOMMENT (CLinePar (CParagraph 0 (0 0) 0 2 0 1 233) "pSicoR-GFP" 2)COMMENT 5 "" 0 4)COMMENT #244=(CFolderParCOMMENT (CGroupPar (CParagraph 1 (0 0) 1 1 0 0 178)COMMENT (CObjectListCOMMENT #245=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "DNA 'pSicoR-GFP'" 1)COMMENT #246=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "Local object" 1)COMMENT #247=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "Created: 02/20/04 11:41 AM" 1)COMMENT #248=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "Last Modified: 06/18/04 04:58 PM" 1)COMMENT #249=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "length: 7567 bp" 1)COMMENT #250=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "storage type: Basic" 1)COMMENT #251=(CLinePar (CParagraph 0 (0 0) 1 2 1 0 180)COMMENT "form: Circular" 1))) "General Description")COMMENT #252=(CFolderParCOMMENT (CGroupPar (CParagraph 2 (0 0) 1 1 0 0 178)(CObjectList))COMMENT "Standard Fields")COMMENT #253=(CRefLineParCOMMENT (CLinePar (CParagraph 0 (0 0) 0 2 0 0 233)"Comments" 2) 1COMMENT "" 0 0)COMMENT #254=(CFolderParCOMMENT (CGroupPar (CParagraph 8 (0 0) 1 2 0 0 178)(CObjectList))COMMENT "Annotations")COMMENT #255=(CFolderParCOMMENT (CGroupPar (CParagraph 12 (6 0) 1 1 0 0 178)COMMENT (CObjectListCOMMENT #256=(CFolderParCOMMENT (CGroupPar (CParagraph 21 (7 21 0) 1 1 1 0178)

Page 19: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #257=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 1076 (3 #230# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #258=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 1076 End: 1213"1))) "Psi")COMMENT #259=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 1707 (3 #231# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #260=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 1707 End: 1910"1))) "RRE")COMMENT #261=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2826 (3 #234# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #262=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2826 End: 2859"1)))COMMENT "5' LoxP")COMMENT #263=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2945 (3 #232# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #264=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2945 End: 2960"1)))COMMENT "shRNA cloning site")COMMENT #265=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 4367 (3 #235# 0) 1 2 20 194)COMMENT (CObjectList

Page 20: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #266=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 4367 End: 4400"1)))COMMENT "3' LoxP")COMMENT #267=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 4456 (3 #236# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #268=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 4456 End: 4835"1))) "WRE")))COMMENT "Misc. Feature (6 total)")COMMENT #269=(CFolderParCOMMENT (CGroupPar (CParagraph 27 (7 27 0) 1 1 1 0178)COMMENT (CObjectListCOMMENT #270=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 493 (3 #240# 0) 1 2 2 0194)COMMENT (CObjectListCOMMENT #271=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 493 End: 512 "1)))COMMENT "Lox replace rev")COMMENT #272=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2481 (3 #237# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #273=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2481 End: 2500"1)))COMMENT "Lox replace for")COMMENT #274=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2708 (3 #238# 0) 1 2 20 194)COMMENT (CObjectList

Page 21: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #275=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2708 End: 2733"1)))COMMENT "Loop out for")COMMENT #276=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 3246 (3 #241# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #277=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 3246 End: 3265"1)))COMMENT "Lox replace rev")COMMENT #278=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 4538 (3 #239# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #279=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 4538 End: 4561"1)))COMMENT "Loop out rev"))) "Primer (5total)")COMMENT #280=(CFolderParCOMMENT (CGroupPar (CParagraph 29 (7 29 0) 1 1 1 0178)COMMENT (CObjectListCOMMENT #281=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2631 (3 #233# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #282=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2631 End: 2944"1)))COMMENT "U6 Promotor")))COMMENT "Promoter Eukaryotic (1 total)")COMMENT #283=(CFolderParCOMMENT (CGroupPar (CParagraph 51 (7 51 0) 1 1 1 0178)

Page 22: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #284=(CFolderParCOMMENT (CGroupParCOMMENT (CParagraph 2983 (3 #229# 0) 1 2 20 194)COMMENT (CObjectListCOMMENT #285=(CLineParCOMMENT (CParagraph 0 (0 0) 1 2 3 0180)COMMENT "Start: 2983 End: 4353"1)))COMMENT "CMV-GFP"))) "5' Clip (1 total)")))COMMENT "Feature Map")COMMENT #286=(CFolderParCOMMENT (CGroupPar (CParagraph 13 (0 0) 1 1 0 0 178)COMMENT (CObjectListCOMMENT #287=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SmaI: 0 sites") 3 3"CCCGGG"COMMENT "GGGCCC")COMMENT #288=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "XmaI: 0 sites") 1 5"CCCGGG"COMMENT "GGGCCC")COMMENT #289=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AatI: 0 sites") 3 3"AGGCCT"COMMENT "TCCGGA")COMMENT #290=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AscI: 0 sites") 2 6"GGCGCGCC"COMMENT "CCGCGCGG")COMMENT #291=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AspI: 0 sites") 4 5"GACNNNGTC"COMMENT "CTGNNNCAG")COMMENT #292=(CRSFolderParCOMMENT (CFolderPar

Page 23: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AsuII: 0 sites") 2 4"TTCGAA"COMMENT "AAGCTT")COMMENT #293=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AvrII: 0 sites") 1 5"CCTAGG"COMMENT "GGATCC")COMMENT #294=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BbrPI: 0 sites") 3 3"CACGTG"COMMENT "GTGCAC")COMMENT #295=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BclI: 0 sites") 1 5"TGATCA"COMMENT "ACTAGT")COMMENT #296=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BlnI: 0 sites") 1 5"CCTAGG"COMMENT "GGATCC")COMMENT #297=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Bpu1102I: 0 sites") 2 5"GCTNAGC"COMMENT "CGANTCG")COMMENT #298=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsaBI: 0 sites") 5 5"GATNNNNATC"COMMENT "CTANNNNTAG")COMMENT #299=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsiWI: 0 sites") 1 5"CGTACG"COMMENT "GCATGC")COMMENT #300=(CRSFolderParCOMMENT (CFolderPar

Page 24: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BspMI: 0 sites") 10 14COMMENT "ACCTGCNNNNNNNNN" "TGGACGNNNNNNNNN")COMMENT #301=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Bst1107I: 0 sites") 3 3"GTATAC"COMMENT "CATATG")COMMENT #302=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BstBI: 0 sites") 2 4"TTCGAA"COMMENT "AAGCTT")COMMENT #303=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BstXI: 0 sites") 8 4COMMENT "CCANNNNNNTGG" "GGTNNNNNNACC")COMMENT #304=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "CelII: 0 sites") 2 5"GCTNAGC"COMMENT "CGANTCG")COMMENT #305=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Csp45I: 0 sites") 2 4"TTCGAA"COMMENT "AAGCTT")COMMENT #306=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Esp3I: 0 sites") 7 11COMMENT "CGTCTCNNNNNN" "GCAGAGNNNNNN")COMMENT #307=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EspI: 0 sites") 2 5"GCTNAGC"COMMENT "CGANTCG")COMMENT #308=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MamI: 0 sites") 5 5"GATNNNNATC"

Page 25: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "CTANNNNTAG")COMMENT #309=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MluNI: 0 sites") 3 3"TGGCCA"COMMENT "ACCGGT")COMMENT #310=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MscI: 0 sites") 3 3"TGGCCA"COMMENT "ACCGGT")COMMENT #311=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NspV: 0 sites") 2 4"TTCGAA"COMMENT "AAGCTT")COMMENT #312=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PacI: 0 sites") 5 3"TTAATTAA"COMMENT "AATTAATT")COMMENT #313=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PmaCI: 0 sites") 3 3"CACGTG"COMMENT "GTGCAC")COMMENT #314=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PmeI: 0 sites") 4 4"GTTTAAAC"COMMENT "CAAATTTG")COMMENT #315=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PmlI: 0 sites") 3 3"CACGTG"COMMENT "GTGCAC")COMMENT #316=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "RsrII: 0 sites") 2 5"CGGWCCG"

Page 26: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "GCCWGGC")COMMENT #317=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SexAI: 0 sites") 1 6"ACCWGGT"COMMENT "TGGWCCA")COMMENT #318=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SfiI: 0 sites") 8 5COMMENT "GGCCNNNNNGGCC" "CCGGNNNNNCCGG")COMMENT #319=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SfuI: 0 sites") 2 4"TTCGAA"COMMENT "AAGCTT")COMMENT #320=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SgrAI: 0 sites") 2 6"CRCCGGYG"COMMENT "GYGGCCRC")COMMENT #321=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SphI: 0 sites") 5 1"GCATGC"COMMENT "CGTACG")COMMENT #322=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "StuI: 0 sites") 3 3"AGGCCT"COMMENT "TCCGGA")COMMENT #323=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SwaI: 0 sites") 4 4"ATTTAAAT"COMMENT "TAAATTTA")COMMENT #324=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Tth111I: 0 sites") 4 5COMMENT "GACNNNGTC" "CTGNNNCAG")COMMENT #325=(CRSFolderPar

Page 27: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 0 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "XcmI: 0 sites") 8 7COMMENT "CCANNNNNNNNNTGG" "GGTNNNNNNNNNACC")COMMENT #326=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #327=(CGroupParCOMMENT (CParagraph 0 (10 #2# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #328=(CLineParCOMMENT (CParagraph 0 (1 #2# 1) 1 22 0 191)COMMENT " N1: 2971 " 1))))) "BamHI:1 site")COMMENT 1 5 "GGATCC" "CCTAGG")COMMENT #329=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #330=(CGroupParCOMMENT (CParagraph 0 (10 #4# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #331=(CLineParCOMMENT (CParagraph 0 (1 #4# 1) 1 22 0 191)COMMENT " N1: 4349 " 1))))) "EcoRI:1 site")COMMENT 1 5 "GAATTC" "CTTAAG")COMMENT #332=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #333=(CGroupParCOMMENT (CParagraph 0 (10 #7# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #334=(CLineParCOMMENT (CParagraph 0 (1 #7# 1) 1 22 0 191)COMMENT " N1: 2430 " 1))))) "PstI: 1site")COMMENT 5 1 "CTGCAG" "GACGTC")COMMENT #335=(CRSFolderParCOMMENT (CFolderPar

Page 28: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #336=(CGroupParCOMMENT (CParagraph 0 (10 #12# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #337=(CLineParCOMMENT (CParagraph 0 (1 #12# 1) 1 22 0COMMENT 191) " N1: 5183 " 1)))))COMMENT "Acc65I: 1 site") 1 5 "GGTACC" "CCATGG")COMMENT #338=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #339=(CGroupParCOMMENT (CParagraph 0 (10 #14# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #340=(CLineParCOMMENT (CParagraph 0 (1 #14# 1) 1 22 0COMMENT 191) " N1: 5561 " 1)))))COMMENT "AccIII: 1 site") 1 5 "TCCGGA" "AGGCCT")COMMENT #341=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #342=(CGroupParCOMMENT (CParagraph 0 (10 #20# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #343=(CLineParCOMMENT (CParagraph 0 (1 #20# 1) 1 22 0COMMENT 191) " N1: 3616 " 1)))))COMMENT "AgeI: 1 site") 1 5 "ACCGGT" "TGGCCA")COMMENT #344=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #345=(CGroupParCOMMENT (CParagraph 0 (10 #25# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #346=(CLineParCOMMENT (CParagraph 0 (1 #25# 1) 1 22 0

Page 29: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 191) " N1: 6870 " 1)))))COMMENT "AosI: 1 site") 3 3 "TGCGCA" "ACGCGT")COMMENT #347=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #348=(CGroupParCOMMENT (CParagraph 0 (10 #26# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #349=(CLineParCOMMENT (CParagraph 0 (1 #26# 1) 1 22 0COMMENT 191) " N1: 2622 " 1)))))COMMENT "ApaI: 1 site") 5 1 "GGGCCC" "CCCGGG")COMMENT #350=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #351=(CGroupParCOMMENT (CParagraph 0 (10 #32# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #352=(CLineParCOMMENT (CParagraph 0 (1 #32# 1) 1 22 0COMMENT 191) " N1: 5183 " 1)))))COMMENT "Asp718: 1 site") 1 5 "GGTACC" "CCATGG")COMMENT #353=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #354=(CGroupParCOMMENT (CParagraph 0 (10 #33# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #355=(CLineParCOMMENT (CParagraph 0 (1 #33# 1) 1 22 0COMMENT 191) " N1: 6648 " 1)))))COMMENT "AspEI: 1 site") 6 5 "GACNNNNNGTC""CTGNNNNNCAG")COMMENT #356=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #357=(CGroupPar

Page 30: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CParagraph 0 (10 #38# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #358=(CLineParCOMMENT (CParagraph 0 (1 #38# 1) 1 22 0COMMENT 191) " N1: 6870 " 1)))))COMMENT "AviII: 1 site") 3 3 "TGCGCA" "ACGCGT")COMMENT #359=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #360=(CGroupParCOMMENT (CParagraph 0 (10 #62# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #361=(CLineParCOMMENT (CParagraph 0 (1 #62# 1) 1 22 0COMMENT 191) " N1: 5561 " 1)))))COMMENT "BseAI: 1 site") 1 5 "TCCGGA" "AGGCCT")COMMENT #362=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #363=(CGroupParCOMMENT (CParagraph 0 (10 #71# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #364=(CLineParCOMMENT (CParagraph 0 (1 #71# 1) 1 22 0COMMENT 191) " N1: 1987 " 1)))))COMMENT "BsmI: 1 site") 7 5 "GAATGCNN" "CTTACGNN")COMMENT #365=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #366=(CGroupParCOMMENT (CParagraph 0 (10 #72# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #367=(CLineParCOMMENT (CParagraph 0 (1 #72# 1) 1 22 0COMMENT 191) " N1: 2618 " 1)))))COMMENT "Bsp120I: 1 site") 1 5 "GGGCCC" "CCCGGG")COMMENT #368=(CRSFolderPar

Page 31: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #369=(CGroupParCOMMENT (CParagraph 0 (10 #75# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #370=(CLineParCOMMENT (CParagraph 0 (1 #75# 1) 1 22 0COMMENT 191) " N1: 5561 " 1)))))COMMENT "BspEI: 1 site") 1 5 "TCCGGA" "AGGCCT")COMMENT #371=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #372=(CGroupParCOMMENT (CParagraph 0 (10 #82# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #373=(CLineParCOMMENT (CParagraph 0 (1 #82# 1) 1 22 0COMMENT 191) " N1: 4338 " 1)))))COMMENT "BsrGI: 1 site") 1 5 "TGTACA" "ACATGT")COMMENT #374=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #375=(CGroupParCOMMENT (CParagraph 0 (10 #84# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #376=(CLineParCOMMENT (CParagraph 0 (1 #84# 1) 1 22 0COMMENT 191) " N1: 1102 " 1)))))COMMENT "BssHII: 1 site") 1 5 "GCGCGC" "CGCGCG")COMMENT #377=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #378=(CGroupParCOMMENT (CParagraph 0 (10 #87# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #379=(CLinePar

Page 32: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CParagraph 0 (1 #87# 1) 1 22 0COMMENT 191) " N1: 2953 " 1)))))COMMENT "BstEII: 1 site") 1 6 "GGTNACC" "CCANTGG")COMMENT #380=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #381=(CGroupParCOMMENT (CParagraph 0 (10 #92# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #382=(CLineParCOMMENT (CParagraph 0 (1 #92# 1) 1 22 0COMMENT 191) " N1: 5179 " 1)))))COMMENT "Bsu36I: 1 site") 2 5 "CCTNAGG" "GGANTCC")COMMENT #383=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #384=(CGroupParCOMMENT (CParagraph 0 (10 #104# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #385=(CLineParCOMMENT (CParagraph 0 (1 #104# 1) 12 2 0COMMENT 191) " N1: 5863 " 1)))))COMMENT "DrdI: 1 site") 7 5 "GACNNNNNNGTC""CTGNNNNNNCAG")COMMENT #386=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #387=(CGroupParCOMMENT (CParagraph 0 (10 #109# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #388=(CLineParCOMMENT (CParagraph 0 (1 #109# 1) 12 2 0COMMENT 191) " N1: 6648 " 1)))))COMMENT "Eam1105I: 1 site") 6 5 "GACNNNNNGTC"COMMENT "CTGNNNNNCAG")COMMENT #389=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)

Page 33: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #390=(CGroupParCOMMENT (CParagraph 0 (10 #113# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #391=(CLineParCOMMENT (CParagraph 0 (1 #113# 1) 12 2 0COMMENT 191) " N1: 3612 " 1)))))COMMENT "Eco47III: 1 site") 3 3 "AGCGCT" "TCGCGA")COMMENT #392=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #393=(CGroupParCOMMENT (CParagraph 0 (10 #115# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #394=(CLineParCOMMENT (CParagraph 0 (1 #115# 1) 12 2 0COMMENT 191) " N1: 1563 " 1)))))COMMENT "EcoNI: 1 site") 5 6 "CCTNNNNNAGG""GGANNNNNTCC")COMMENT #395=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #396=(CGroupParCOMMENT (CParagraph 0 (10 #124# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #397=(CLineParCOMMENT (CParagraph 0 (1 #124# 1) 12 2 0COMMENT 191) " N1: 6870 " 1)))))COMMENT "FspI: 1 site") 3 3 "TGCGCA" "ACGCGT")COMMENT #398=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #399=(CGroupParCOMMENT (CParagraph 0 (10 #134# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #400=(CLineParCOMMENT (CParagraph 0 (1 #134# 1) 12 2 0

Page 34: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 191) " N1: 2945 " 1)))))COMMENT "HpaI: 1 site") 3 3 "GTTAAC" "CAATTG")COMMENT #401=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #402=(CGroupParCOMMENT (CParagraph 0 (10 #138# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #403=(CLineParCOMMENT (CParagraph 0 (1 #138# 1) 12 2 0COMMENT 191) " N1: 1028 " 1)))))COMMENT "KasI: 1 site") 1 5 "GGCGCC" "CCGCGG")COMMENT #404=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #405=(CGroupParCOMMENT (CParagraph 0 (10 #139# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #406=(CLineParCOMMENT (CParagraph 0 (1 #139# 1) 12 2 0COMMENT 191) " N1: 5187 " 1)))))COMMENT "KpnI: 1 site") 5 1 "GGTACC" "CCATGG")COMMENT #407=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #408=(CGroupParCOMMENT (CParagraph 0 (10 #141# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #409=(CLineParCOMMENT (CParagraph 0 (1 #141# 1) 12 2 0COMMENT 191) " N1: 4960 " 1)))))COMMENT "KspI: 1 site") 4 2 "CCGCGG" "GGCGCC")COMMENT #410=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #411=(CGroupParCOMMENT (CParagraph 0 (10 #150# 0) 1 2 2 0180)

Page 35: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #412=(CLineParCOMMENT (CParagraph 0 (1 #150# 1) 12 2 0COMMENT 191) " N1: 241 " 1)))))COMMENT "MluI: 1 site") 1 5 "ACGCGT" "TGCGCA")COMMENT #413=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #414=(CGroupParCOMMENT (CParagraph 0 (10 #153# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #415=(CLineParCOMMENT (CParagraph 0 (1 #153# 1) 12 2 0COMMENT 191) " N1: 5561 " 1)))))COMMENT "MroI: 1 site") 1 5 "TCCGGA" "AGGCCT")COMMENT #416=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #417=(CGroupParCOMMENT (CParagraph 0 (10 #164# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #418=(CLineParCOMMENT (CParagraph 0 (1 #164# 1) 12 2 0COMMENT 191) " N1: 1029 " 1)))))COMMENT "NarI: 1 site") 2 4 "GGCGCC" "CCGCGG")COMMENT #419=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #420=(CGroupParCOMMENT (CParagraph 0 (10 #169# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #421=(CLineParCOMMENT (CParagraph 0 (1 #169# 1) 12 2 0COMMENT 191) " N1: 3607 " 1)))))COMMENT "NheI: 1 site") 1 5 "GCTAGC" "CGATCG")COMMENT #422=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)

Page 36: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #423=(CGroupParCOMMENT (CParagraph 0 (10 #172# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #424=(CLineParCOMMENT (CParagraph 0 (1 #172# 1) 12 2 0COMMENT 191) " N1: 2983 " 1)))))COMMENT "NotI: 1 site") 2 6 "GCGGCCGC" "CGCCGGCG")COMMENT #425=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #426=(CGroupParCOMMENT (CParagraph 0 (10 #174# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #427=(CLineParCOMMENT (CParagraph 0 (1 #174# 1) 12 2 0COMMENT 191) " N1: 3015 " 1)))))COMMENT "NsiI: 1 site") 5 1 "ATGCAT" "TACGTA")COMMENT #428=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #429=(CGroupParCOMMENT (CParagraph 0 (10 #178# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #430=(CLineParCOMMENT (CParagraph 0 (1 #178# 1) 12 2 0COMMENT 191) " N1: 2960 " 1)))))COMMENT "PaeR7I: 1 site") 1 5 "CTCGAG" "GAGCTC")COMMENT #431=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #432=(CGroupParCOMMENT (CParagraph 0 (10 #179# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #433=(CLineParCOMMENT (CParagraph 0 (1 #179# 1) 12 2 0COMMENT 191) " N1: 4698 " 1)))))

Page 37: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "PflMI: 1 site") 7 4 "CCANNNNNTGG""GGTNNNNNACC")COMMENT #434=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #435=(CGroupParCOMMENT (CParagraph 0 (10 #180# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #436=(CLineParCOMMENT (CParagraph 0 (1 #180# 1) 12 2 0COMMENT 191) " N1: 3616 " 1)))))COMMENT "PinAI: 1 site") 1 5 "ACCGGT" "TGGCCA")COMMENT #437=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #438=(CGroupParCOMMENT (CParagraph 0 (10 #185# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #439=(CLineParCOMMENT (CParagraph 0 (1 #185# 1) 12 2 0COMMENT 191) " N1: 3011 " 1)))))COMMENT "Ppu10I: 1 site") 1 5 "ATGCAT" "TACGTA")COMMENT #440=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #441=(CGroupParCOMMENT (CParagraph 0 (10 #189# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #442=(CLineParCOMMENT (CParagraph 0 (1 #189# 1) 12 2 0COMMENT 191) " N1: 5214 " 1)))))COMMENT "PvuII: 1 site") 3 3 "CAGCTG" "GTCGAC")COMMENT #443=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #444=(CGroupParCOMMENT (CParagraph 0 (10 #194# 0) 1 2 2 0180)

Page 38: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectListCOMMENT #445=(CLineParCOMMENT (CParagraph 0 (1 #194# 1) 12 2 0COMMENT 191) " N1: 4960 " 1)))))COMMENT "SacII: 1 site") 4 2 "CCGCGG" "GGCGCC")COMMENT #446=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #447=(CGroupParCOMMENT (CParagraph 0 (10 #196# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #448=(CLineParCOMMENT (CParagraph 0 (1 #196# 1) 12 2 0COMMENT 191)COMMENT " N1: 1493 (on complementarystrand)"COMMENT 1))))) "SapI: 1 site") 8 11COMMENT "GCTCTTCNNNNN" "CGAGAAGNNNNN")COMMENT #449=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #450=(CGroupParCOMMENT (CParagraph 0 (10 #209# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #451=(CLineParCOMMENT (CParagraph 0 (1 #209# 1) 12 2 0COMMENT 191) " N1: 262 " 1)))))COMMENT "SpeI: 1 site") 1 5 "ACTAGT" "TGATCA")COMMENT #452=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #453=(CGroupParCOMMENT (CParagraph 0 (10 #211# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #454=(CLineParCOMMENT (CParagraph 0 (1 #211# 1) 12 2 0COMMENT 191) " N1: 4338 " 1)))))COMMENT "SspBI: 1 site") 1 5 "TGTACA" "ACATGT")

Page 39: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #455=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #456=(CGroupParCOMMENT (CParagraph 0 (10 #222# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #457=(CLineParCOMMENT (CParagraph 0 (1 #222# 1) 12 2 0COMMENT 191) " N1: 4698 " 1)))))COMMENT "Van91I: 1 site") 7 4 "CCANNNNNTGG""GGTNNNNNACC")COMMENT #458=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #459=(CGroupParCOMMENT (CParagraph 0 (10 #223# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #460=(CLineParCOMMENT (CParagraph 0 (1 #223# 1) 12 2 0COMMENT 191) " N1: 2626 " 1)))))COMMENT "XbaI: 1 site") 1 5 "TCTAGA" "AGATCT")COMMENT #461=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 1 (8 0) 1 1 1 0 178)COMMENT (CObjectListCOMMENT #462=(CGroupParCOMMENT (CParagraph 0 (10 #225# 0) 1 2 2 0180)COMMENT (CObjectListCOMMENT #463=(CLineParCOMMENT (CParagraph 0 (1 #225# 1) 12 2 0COMMENT 191) " N1: 2960 " 1)))))COMMENT "XhoI: 1 site") 1 5 "CTCGAG" "GAGCTC")COMMENT #464=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "ClaI: 2 sites") 2 4"ATCGAT"COMMENT "TAGCTA")COMMENT #465=(CRSFolderParCOMMENT (CFolderPar

Page 40: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Asp700: 2 sites") 5 5COMMENT "GAANNNNTTC" "CTTNNNNAAG")COMMENT #466=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BbsI: 2 sites") 8 12COMMENT "GAAGACNNNNNNN" "CTTCTGNNNNNNN")COMMENT #467=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BcgI: 2 sites") 24 22COMMENT "CGANNNNNNTGCNNNNNNNNNNNNN"COMMENT "GCTNNNNNNACGNNNNNNNNNNNNN")COMMENT #468=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BpuAI: 2 sites") 8 12COMMENT "GAAGACNNNNNNN" "CTTCTGNNNNNNN")COMMENT #469=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsaAI: 2 sites") 3 3"YACGTR"COMMENT "RTGCAY")COMMENT #470=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BspDI: 2 sites") 2 4"ATCGAT"COMMENT "TAGCTA")COMMENT #471=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BspHI: 2 sites") 1 5"TCATGA"COMMENT "AGTACT")COMMENT #472=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsrBI: 2 sites") 3 3"GAGCGG"COMMENT "CTCGCC")COMMENT #473=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "DraII: 2 sites") 2 5"RGGNCCY"

Page 41: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "YCCNGGR")COMMENT #474=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "DraIII: 2 sites") 6 3"CACNNNGTG"COMMENT "GTGNNNCAC")COMMENT #475=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EcoO109I: 2 sites") 2 5"RGGNCCY"COMMENT "YCCNGGR")COMMENT #476=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MfeI: 2 sites") 1 5"CAATTG"COMMENT "GTTAAC")COMMENT #477=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MunI: 2 sites") 1 5"CAATTG"COMMENT "GTTAAC")COMMENT #478=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NdeI: 2 sites") 2 4"CATATG"COMMENT "GTATAC")COMMENT #479=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NruI: 2 sites") 3 3"TCGCGA"COMMENT "AGCGCT")COMMENT #480=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PpuMI: 2 sites") 2 5"RGGWCCY"COMMENT "YCCWGGR")COMMENT #481=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Psp1406I: 2 sites") 2 4"AACGTT"

Page 42: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "TTGCAA")COMMENT #482=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PvuI: 2 sites") 4 2"CGATCG"COMMENT "GCTAGC")COMMENT #483=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "RcaI: 2 sites") 1 5"TCATGA"COMMENT "AGTACT")COMMENT #484=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SalI: 2 sites") 1 5"GTCGAC"COMMENT "CAGCTG")COMMENT #485=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "ScaI: 2 sites") 3 3"AGTACT"COMMENT "TCATGA")COMMENT #486=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SnaBI: 2 sites") 3 3"TACGTA"COMMENT "ATGCAT")COMMENT #487=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SspI: 2 sites") 3 3"AATATT"COMMENT "TTATAA")COMMENT #488=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 2 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "XmnI: 2 sites") 5 5"GAANNNNTTC"COMMENT "CTTNNNNAAG")COMMENT #489=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AvaI: 3 sites") 1 5"CYCGRG"

Page 43: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "GRGCYC")COMMENT #490=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NcoI: 3 sites") 1 5"CCATGG"COMMENT "GGTACC")COMMENT #491=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AflII: 3 sites") 1 5"CTTAAG"COMMENT "GAATTC")COMMENT #492=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AflIII: 3 sites") 1 5"ACRYGT"COMMENT "TGYRCA")COMMENT #493=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AseI: 3 sites") 2 4"ATTAAT"COMMENT "TAATTA")COMMENT #494=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AsnI: 3 sites") 2 4"ATTAAT"COMMENT "TAATTA")COMMENT #495=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BfrI: 3 sites") 1 5"CTTAAG"COMMENT "GAATTC")COMMENT #496=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsrDI: 3 sites") 8 6"GCAATGNNN"COMMENT "CGTTACNNN")COMMENT #497=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EagI: 3 sites") 1 5"CGGCCG"

Page 44: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "GCCGGC")COMMENT #498=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Ecl136II: 3 sites") 3 3"GAGCTC"COMMENT "CTCGAG")COMMENT #499=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EclXI: 3 sites") 1 5"CGGCCG"COMMENT "GCCGGC")COMMENT #500=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EcoRV: 3 sites") 3 3"GATATC"COMMENT "CTATAG")COMMENT #501=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "HaeII: 3 sites") 5 1"RGCGCY"COMMENT "YCGCGR")COMMENT #502=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NaeI: 3 sites") 3 3"GCCGGC"COMMENT "CGGCCG")COMMENT #503=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NgoMI: 3 sites") 1 5"GCCGGC"COMMENT "CGGCCG")COMMENT #504=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NspI: 3 sites") 5 1"RCATGY"COMMENT "YGTACR")COMMENT #505=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SacI: 3 sites") 5 1"GAGCTC"

Page 45: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "CTCGAG")COMMENT #506=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 3 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "XmaIII: 3 sites") 1 5"CGGCCG"COMMENT "GCCGGC")COMMENT #507=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "ApaLI: 4 sites") 1 5"GTGCAC"COMMENT "CACGTG")COMMENT #508=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AccI: 4 sites") 2 4"GTMKAC"COMMENT "CAKMTG")COMMENT #509=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Alw44I: 4 sites") 1 5"GTGCAC"COMMENT "CACGTG")COMMENT #510=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AlwNI: 4 sites") 6 3"CAGNNNCTG"COMMENT "GTCNNNGAC")COMMENT #511=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BglII: 4 sites") 1 5"AGATCT"COMMENT "TCTAGA")COMMENT #512=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsaI: 4 sites") 7 11COMMENT "GGTCTCNNNNNN" "CCAGAGNNNNNN")COMMENT #513=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EarI: 4 sites") 7 10COMMENT "CTCTTCNNNNN" "GAGAAGNNNNN")COMMENT #514=(CRSFolderPar

Page 46: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "HincII: 4 sites") 3 3"GTYRAC"COMMENT "CARYTG")COMMENT #515=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "HindII: 4 sites") 3 3"GTYRAC"COMMENT "CARYTG")COMMENT #516=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Ksp632I: 4 sites") 7 10COMMENT "CTCTTCNNNNN" "GAGAAGNNNNN")COMMENT #517=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 4 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SnoI: 4 sites") 1 5"GTGCAC"COMMENT "CACGTG")COMMENT #518=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 5 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "HindIII: 5 sites") 1 5"AAGCTT"COMMENT "TTCGAA")COMMENT #519=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 5 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BanII: 5 sites") 5 1"GRGCYC"COMMENT "CYCGRG")COMMENT #520=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 5 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BpmI: 5 sites") 22 20COMMENT "CTGGAGNNNNNNNNNNNNNNNNN""GACCTCNNNNNNNNNNNNNNNNN")COMMENT #521=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 5 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "DraI: 5 sites") 3 3"TTTAAA"COMMENT "AAATTT")COMMENT #522=(CRSFolderParCOMMENT (CFolderPar

Page 47: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AvaII: 6 sites") 1 4"GGWCC"COMMENT "CCWGG")COMMENT #523=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BanI: 6 sites") 1 5"GGYRCC"COMMENT "CCRYGG")COMMENT #524=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsaWI: 6 sites") 1 5"WCCGGW"COMMENT "WGGCCW")COMMENT #525=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsgI: 6 sites") 22 20COMMENT "GTGCAGNNNNNNNNNNNNNNNNN""CACGTCNNNNNNNNNNNNNNNNN")COMMENT #526=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsrFI: 6 sites") 1 5"RCCGGY"COMMENT "YGGCCR")COMMENT #527=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Cfr10I: 6 sites") 1 5"RCCGGY"COMMENT "YGGCCR")COMMENT #528=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "DsaI: 6 sites") 1 5"CCRYGG"COMMENT "GGYRCC")COMMENT #529=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "EaeI: 6 sites") 1 5"YGGCCR"COMMENT "RCCGGY")COMMENT #530=(CRSFolderParCOMMENT (CFolderPar

Page 48: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 6 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "TfiI: 6 sites") 1 4"GAWTC"COMMENT "CTWAG")COMMENT #531=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 7 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AcsI: 7 sites") 1 5"RAATTY"COMMENT "YTTAAR")COMMENT #532=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 7 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "ApoI: 7 sites") 1 5"RAATTY"COMMENT "YTTAAR")COMMENT #533=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 7 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BglI: 7 sites") 7 4"GCCNNNNNGGC"COMMENT "CGGNNNNNCCG")COMMENT #534=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 7 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "MspA1I: 7 sites") 3 3"CMGCKG"COMMENT "GKCGMC")COMMENT #535=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 8 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "Eco57I: 8 sites") 22 20COMMENT "CTGAAGNNNNNNNNNNNNNNNNN""GACTTCNNNNNNNNNNNNNNNNN")COMMENT #536=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 8 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "PleI: 8 sites") 9 10COMMENT "GAGTCNNNNNN" "CTCAGNNNNNN")COMMENT #537=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 8 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "SfcI: 8 sites") 1 5"CTRYAG"COMMENT "GAYRTC")COMMENT #538=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)

Page 49: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "AatII: 9 sites") 5 1"GACGTC"COMMENT "CTGCAG")COMMENT #539=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "AspHI: 9 sites") 5 1"GWGCWC"COMMENT "CWCGWG")COMMENT #540=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsiEI: 9 sites") 4 2"CGRYCG"COMMENT "GCYRGC")COMMENT #541=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "BsiHKAI: 9 sites") 5 1"GWGCWC"COMMENT "CWCGWG")COMMENT #542=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "HgiAI: 9 sites") 5 1"GWGCWC"COMMENT "CWCGWG")COMMENT #543=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "McrI: 9 sites") 4 2"CGRYCG"COMMENT "GCYRGC")COMMENT #544=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "NciI: 9 sites") 2 3"CCSGG"COMMENT "GGSCC")COMMENT #545=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 9 (8 0) 1 1 1 0 178)COMMENT (CObjectList)) "StyI: 9 sites") 1 5"CCWWGG"COMMENT "GGWWCC")COMMENT #546=(CRSFolderParCOMMENT (CFolderPar

Page 50: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 11 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsmAI: 11 sites") 6 10COMMENT "GTCTCNNNNNN" "CAGAGNNNNNN")COMMENT #547=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 11 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MslI: 11 sites") 5 5"CAYNNNNRTG"COMMENT "GTRNNNNYAC")COMMENT #548=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 12 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "AcyI: 12 sites") 2 4"GRCGYC"COMMENT "CYGCRG")COMMENT #549=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 12 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsaHI: 12 sites") 2 4"GRCGYC"COMMENT "CYGCRG")COMMENT #550=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 12 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "FokI: 12 sites") 14 18COMMENT "GGATGNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNN")COMMENT #551=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 13 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "HgaI: 13 sites") 10 15COMMENT "GACGCNNNNNNNNNNN" "CTGCGNNNNNNNNNNN")COMMENT #552=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 14 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "HinfI: 14 sites") 1 4"GANTC"COMMENT "CTNAG")COMMENT #553=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 16 (8 0) 1 1 1 0178)

Page 51: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "HphI: 16 sites") 13 12COMMENT "GGTGANNNNNNNNN" "CCACTNNNNNNNNN")COMMENT #554=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 16 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "SfaNI: 16 sites") 10 14COMMENT "GCATCNNNNNNNNNN" "CGTAGNNNNNNNNNN")COMMENT #555=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 17 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BmyI: 17 sites") 5 1"GDGCHC"COMMENT "CHCGDG")COMMENT #556=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 17 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsmFI: 17 sites") 15 19COMMENT "GGGACNNNNNNNNNNNNNNN""CCCTGNNNNNNNNNNNNNNN")COMMENT #557=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 17 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Bsp1286I: 17 sites") 5 1"GDGCHC"COMMENT "CHCGDG")COMMENT #558=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 18 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "DdeI: 18 sites") 1 4"CTNAG"COMMENT "GANTC")COMMENT #559=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 18 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "TaqI: 18 sites") 1 3"TCGA"COMMENT "AGCT")COMMENT #560=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 20 (8 0) 1 1 1 0178)

Page 52: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "BstYI: 20 sites") 1 5"RGATCY"COMMENT "YCTAGR")COMMENT #561=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 20 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "XhoII: 20 sites") 1 5"RGATCY"COMMENT "YCTAGR")COMMENT #562=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 21 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MaeII: 21 sites") 1 3"ACGT"COMMENT "TGCA")COMMENT #563=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 22 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsrI: 22 sites") 6 4"ACTGGNN"COMMENT "TGACCNN")COMMENT #564=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 22 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MboII: 22 sites") 13 12COMMENT "GAAGANNNNNNNNN" "CTTCTNNNNNNNNN")COMMENT #565=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BstUI: 23 sites") 2 2"CGCG"COMMENT "GCGC")COMMENT #566=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "FnuDII: 23 sites") 2 2"CGCG"COMMENT "GCGC")COMMENT #567=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)

Page 53: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "HpaII: 23 sites") 1 3"CCGG"COMMENT "GGCC")COMMENT #568=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MspI: 23 sites") 1 3"CCGG"COMMENT "GGCC")COMMENT #569=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MvnI: 23 sites") 2 2"CGCG"COMMENT "GCGC")COMMENT #570=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "NlaIV: 23 sites") 3 3"GGNNCC"COMMENT "CCNNGG")COMMENT #571=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 23 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "ThaI: 23 sites") 2 2"CGCG"COMMENT "GCGC")COMMENT #572=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 24 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsiYI: 24 sites") 7 4COMMENT "CCNNNNNNNGG" "GGNNNNNNNCC")COMMENT #573=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 24 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BslI: 24 sites") 7 4COMMENT "CCNNNNNNNGG" "GGNNNNNNNCC")COMMENT #574=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 25 (8 0) 1 1 1 0178)

Page 54: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "BfaI: 25 sites") 1 3"CTAG"COMMENT "GATC")COMMENT #575=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 25 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MaeI: 25 sites") 1 3"CTAG"COMMENT "GATC")COMMENT #576=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 25 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MaeIII: 25 sites") 1 6"NGTNACN"COMMENT "NCANTGN")COMMENT #577=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 25 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Sau96I: 25 sites") 1 4"GGNCC"COMMENT "CCNGG")COMMENT #578=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "AlwI: 26 sites") 9 10COMMENT "GGATCNNNNNN" "CCTAGNNNNNN")COMMENT #579=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BsaJI: 26 sites") 1 5"CCNNGG"COMMENT "GGNNCC")COMMENT #580=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BstNI: 26 sites") 2 3"CCWGG"COMMENT "GGWCC")COMMENT #581=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)

Page 55: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "CfoI: 26 sites") 3 1"GCGC"COMMENT "CGCG")COMMENT #582=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "EcoRII: 26 sites") 1 6"NCCWGGN"COMMENT "NGGWCCN")COMMENT #583=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "HhaI: 26 sites") 3 1"GCGC"COMMENT "CGCG")COMMENT #584=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "HinP1I: 26 sites") 1 3"GCGC"COMMENT "CGCG")COMMENT #585=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MvaI: 26 sites") 2 3"CCWGG"COMMENT "GGWCC")COMMENT #586=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 26 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "NlaIII: 26 sites") 5 1"NCATGN"COMMENT "NGTACN")COMMENT #587=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 27 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BbvI: 27 sites") 13 17COMMENT "GCAGCNNNNNNNNNNNNN" "CGTCGNNNNNNNNNNNNN")COMMENT #588=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 28 (8 0) 1 1 1 0178)

Page 56: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CObjectList)) "Csp6I: 28 sites") 1 3"GTAC"COMMENT "CATG")COMMENT #589=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 28 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "RsaI: 28 sites") 2 2"GTAC"COMMENT "CATG")COMMENT #590=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 33 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "HaeIII: 33 sites") 2 2"GGCC"COMMENT "CCGG")COMMENT #591=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 34 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MseI: 34 sites") 1 3"TTAA"COMMENT "AATT")COMMENT #592=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 34 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Tru9I: 34 sites") 1 3"TTAA"COMMENT "AATT")COMMENT #593=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 35 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "DsaV: 35 sites") 1 6"NCCNGGN"COMMENT "NGGNCCN")COMMENT #594=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 35 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "ScrFI: 35 sites") 2 3"CCNGG"COMMENT "GGNCC")COMMENT #595=(CRSFolderParCOMMENT (CFolderPar

Page 57: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CGroupPar (CParagraph 37 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "AluI: 37 sites") 2 2"AGCT"COMMENT "TCGA")COMMENT #596=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 37 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Tsp509I: 37 sites") 1 5"NAATTN"COMMENT "NTTAAN")COMMENT #597=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 40 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "DpnI: 40 sites") 2 2"GATC"COMMENT "CTAG")COMMENT #598=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 40 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "DpnII: 40 sites") 1 5"NGATCN"COMMENT "NCTAGN")COMMENT #599=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 40 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MboI: 40 sites") 1 5"NGATCN"COMMENT "NCTAGN")COMMENT #600=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 40 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "NdeII: 40 sites") 1 5"NGATCN"COMMENT "NCTAGN")COMMENT #601=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 40 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Sau3AI: 40 sites") 1 5"NGATCN"COMMENT "NCTAGN")COMMENT #602=(CRSFolderPar

Page 58: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 42 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "BspWI: 42 sites") 7 4COMMENT "GCNNNNNNNGC" "CGNNNNNNNCG")COMMENT #603=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 42 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MwoI: 42 sites") 7 4COMMENT "GCNNNNNNNGC" "CGNNNNNNNCG")COMMENT #604=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 46 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "Fnu4HI: 46 sites") 2 3"GCNGC"COMMENT "CGNCG")COMMENT #605=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 46 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "ItaI: 46 sites") 2 3"GCNGC"COMMENT "CGNCG")COMMENT #606=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 55 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "MnlI: 55 sites") 11 10COMMENT "CCTCNNNNNNNN" "GGAGNNNNNNNN")COMMENT #607=(CRSFolderParCOMMENT (CFolderParCOMMENT (CGroupPar (CParagraph 73 (8 0) 1 1 1 0178)COMMENT (CObjectList)) "AciI: 73 sites") 1 3"CCGC"COMMENT "GGCG"))) "Restriction Map: (no more than 1site)"))))COMMENT (CGraphViewCOMMENT (CWStyleSheetCOMMENT (CObjectListCOMMENT #608=(CWidgetStyle "RSite Label" 1 (LOGPEN 0 0 13408563) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Georgia") 0.5555560 1 5COMMENT "@N (@S)" 0)COMMENT #609=(CWidgetStyle "Signal Label" 1 (LOGPEN 0 0 0) 1 0 1

Page 59: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGFONT 0 0 0 0 700 0 0 0 0 3 2 1 34 "Arial") 0.666667 01 1COMMENT "@N" 0)COMMENT #610=(CWidgetStyle "Molecule Label 2" 0 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Georgia") 0.5555560 1 16COMMENT "@L bp" 0)COMMENT #611=(CWidgetStyle "Molecule Label 1" 0 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Verdana") 0.8333330 1 1COMMENT "@N" 0)COMMENT #612=(CWidgetStyle "Shape 3" 1 (LOGPEN 0 0 3355545) 1 1COMMENT (LOGBRUSH 0 6724095 0) 0 0 1 (LOGSHAPE 9 1 0.8 1.8 0))COMMENT #613=(CWidgetStyle "Shape 1" 1 (LOGPEN 0 0 6723840) 1 1COMMENT (LOGBRUSH 0 10079334 0) 0 0 1 (LOGSHAPE 9 1 0.8 1.8 0))COMMENT #614=(CWidgetStyle "Axis" 1 (LOGPEN 0 0 10079436) 2 1COMMENT (LOGBRUSH 0 13434879 0) 0 0 1 (LOGSHAPE 10 1 0 0 0))COMMENT #615=(CWidgetStyle "Line 2" 1 (LOGPEN 0 0 6723840) 8 0 0 0 1COMMENT (LOGSHAPE 1 1.9 0 0 0))COMMENT #616=(CWidgetStyle "RSite" 1 (LOGPEN 0 0 10053171) 8 0 0 0 1COMMENT (LOGSHAPE 1 1.9 0 0 0))COMMENT #617=(CWidgetStyle "Short Signal" 1 (LOGPEN 0 0 13395507) 10 00 0 1COMMENT (LOGSHAPE 1 1.9 0 0 0))COMMENT #618=(CWidgetStyle "Uniq RSite Label" 1 (LOGPEN 0 0 153) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Georgia") 0.555556128 1COMMENT 5 "@N (@S)" 0)COMMENT #619=(CWidgetStyle "Vanilla" 1 (LOGPEN 0 0 0) 1 1COMMENT (LOGBRUSH 0 16777215 0) 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 7 48 2 18 "Times New Roman")0.8 0COMMENT 1 2 "?" 0)COMMENT #620=(CWidgetStyle "Mark 1" 0 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 2 7 48 2 2 "Windings") 0.7 0 12 "?"COMMENT 0)COMMENT #621=(CWidgetStyle "Motif Label" 1 (LOGPEN 0 0 16744512) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Arial") 0.6111118388608COMMENT 1 65535 "@N (@H)" 0)COMMENT #622=(CWidgetStyle "Fragment Label 2" 1 (LOGPEN 0 0 0) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 49 "Courier New") 1.050 1 48COMMENT "@F bp (molecule @L bp)" 0)COMMENT #623=(CWidgetStyle "Fragment Label 1" 1 (LOGPEN 0 0 0) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Arial") 0.91 0 1 1COMMENT "Fragment of @N" 0)

Page 60: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #624=(CWidgetStyle "Shape 4" 1 (LOGPEN 0 0 0) 1 1COMMENT (LOGBRUSH 2 8388608 5) 0 0 0)COMMENT #625=(CWidgetStyle "Shape 2" 1 (LOGPEN 0 0 0) 1 1 (LOGBRUSH 0128 0) 0COMMENT 0 0)COMMENT #626=(CWidgetStyle "Shape 0" 1 (LOGPEN 0 0 0) 1 1 (LOGBRUSH 0 00) 0 0COMMENT 0)COMMENT #627=(CWidgetStyle "ORF" 1 (LOGPEN 0 0 16384) 8 0 0 0 1COMMENT (LOGSHAPE 7 0.2 3.41182 2.86186 0.609808))COMMENT #628=(CWidgetStyle "Line 4" 1 (LOGPEN 0 0 32768) 8 0 0 0 0)COMMENT #629=(CWidgetStyle "Line 3" 1 (LOGPEN 0 0 16711680) 8 0 0 0 0)COMMENT #630=(CWidgetStyle "Line 1" 1 (LOGPEN 0 0 16711680) 1 0 0 0 0)COMMENT #631=(CWidgetStyle "Short Promoter" 1 (LOGPEN 0 0 128) 6 0 0 00)COMMENT #632=(CWidgetStyle "Motif" 1 (LOGPEN 0 0 0) 1 0 0 0 0)COMMENT #633=(CWidgetStyle "Line 0" 1 (LOGPEN 0 0 0) 8 0 0 0 0)COMMENT #634=(CWidgetStyle "Void" 0 0 0 0 0)COMMENT #635=(CWidgetStyle "General Label" 1 (LOGPEN 0 0 0) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Times New Roman")0.91 0COMMENT 1 3 "@T @N " 0)COMMENT #636=(CWidgetStyle "Position" 1 (LOGPEN 0 0 0) 1 0 0 0 0)COMMENT #637=(CWidgetStyle "Annotation" 0 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Times New Roman")0.91 0COMMENT 0 0)COMMENT #638=(CWidgetStyle "Position Label" 1 (LOGPEN 0 0 8388608) 1 01COMMENT (LOGFONT 0 0 0 0 400 0 1 0 0 3 2 1 34 "Arial") 0.638388608 1 1COMMENT "@N" 0)COMMENT #639=(CWidgetStyle "Range" 1 (LOGPEN 0 0 0) 1 1COMMENT (LOGBRUSH 0 16777215 0) 0 0 0)COMMENT #640=(CWidgetStyle "Range Label" 1 (LOGPEN 0 0 8388608) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 1 0 0 3 2 1 34 "Arial") 0.638388608 1 1COMMENT "@N" 0)COMMENT #641=(CWidgetStyle "ORF Label" 1 (LOGPEN 0 0 49216) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 18 "Times New Roman")COMMENT 0.611111 0 1 65535 "@N" 0)COMMENT #642=(CWidgetStyle "CDS Label" 1 (LOGPEN 0 0 4227264) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Arial") 0.555556255 1 1COMMENT "@N" 0)COMMENT #643=(CWidgetStyle "Shape 5" 1 (LOGPEN 0 0 0) 3 1COMMENT (LOGBRUSH 0 16777113 0) 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 7 48 2 50 "Arial") 0.9 0 0 1

Page 61: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGSHAPE 9 1 0.8 1.8 0))COMMENT #644=(CWidgetStyle "CDS" 1 (LOGPEN 0 0 0) 1 1 (LOGBRUSH 2 394233) 0 0COMMENT 1 (LOGSHAPE 9 1 0.8 1.8 0))COMMENT #645=(CWidgetStyle "Label 2" 1 (LOGPEN 0 0 4227264) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Arial") 0.9444448388608COMMENT 1 1 "@N" 0)COMMENT #646=(CWidgetStyle "Label 3" 1 (LOGPEN 0 0 8421376) 1 0 1COMMENT (LOGFONT 0 0 0 0 700 255 0 0 0 3 2 1 34 "Arial") 0.833333255 1COMMENT 5 "@N (@S)" 0)COMMENT #647=(CWidgetStyle "Label 4" 1 (LOGPEN 0 0 8437824) 1 0 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 3 2 1 34 "Arial") 0.722222 01 5COMMENT "@N (@S)" 0)COMMENT #648=(CWidgetStyle "Shape 8" 1 (LOGPEN 0 0 65382) 2 1COMMENT (LOGBRUSH 0 65331 0) 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 7 48 2 50 "Arial") 0.9 0 00)COMMENT #649=(CWidgetStyle "Shape 10" 1 (LOGPEN 0 0 16750848) 1 1COMMENT (LOGBRUSH 0 16750848 0) 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 7 48 2 50 "Arial") 0.9 0 0 1COMMENT (LOGSHAPE 9 1 0.8 1.8 0))COMMENT #650=(CWidgetStyle "Shape 11" 1 (LOGPEN 0 0 3381759) 2 1COMMENT (LOGBRUSH 0 26367 0) 1COMMENT (LOGFONT 0 0 0 0 400 0 0 0 0 7 48 2 50 "Arial") 0.9 0 0 1COMMENT (LOGSHAPE 9 1 0.8 1.8 0))) 0.164644 1.74233 0.1646442.53336COMMENT (9 (CShapeMapEntry 8 "Shape 2" 1 "Signal Label") 29COMMENT (CShapeMapEntry 0 "Shape 10" 1 "Signal Label") 22COMMENT (CShapeMapEntry 9 "Shape 2" 1 "Signal Label") 21COMMENT (CShapeMapEntry 8 "Shape 11" 1 "Signal Label") 51COMMENT (CShapeMapEntry 9 "Shape 8" 1 "Signal Label") 70COMMENT (CShapeMapEntry 0 "Unique RSite" 1 "Uniq RSite Label") 67COMMENT (CShapeMapEntry 0 "ORF" 0 "ORF Label")) 40.0378 40.0378 39 390.1COMMENT -5842) 1 1 0 1 1COMMENT (mapper: 20.0865 -26.6902 40.0378 40.0378 0.01 10 -1 7567 7567 10 0)COMMENT #651=(CGroupWidget (CWidget 0 (0 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #652=(CGroupWidget (CWidget 1 (0 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #653=(CAxisCOMMENT (CWideLine (CWidget 0 (0 0) 1 2 0 0 #614# 00)

Page 62: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGPEN 0 0 10079436) 2 (LOGBRUSH 0 134348790) 1COMMENT 6.27501 6.27301 1 0.0214037) 0.0829019)COMMENT #654=(CLabel (CWidget 1001 (0 0) 1 2 0 0 #611# 0100)COMMENT (LOGPEN 0 0 0) 0COMMENT (LOGFONT 58 22 0 0 400 0 0 0 0 3 2 1 34"Verdana")COMMENT 1.74233 0.833333 0 "pSicoR-GFP" "@N" 1 00.871165 0COMMENT -10 5.51978 1.74835 Nil)COMMENT #655=(CLabel (CWidget 1002 (0 0) 1 2 0 0 #610# 0100)COMMENT (LOGPEN 0 0 0) 0COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 1 18"Georgia")COMMENT 1.74233 0.555556 0 "7567 bp" "@L bp" 16 0 -0.871165COMMENT 0 -10.8 2.47266 1.07399 Nil)))COMMENT #656=(CGroupWidget (CWidget 10 (6 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #657=(CGroupWidget (CWidget 21 (7 21 0) 1 2 0 0 Nil0 100)COMMENT (CObjectListCOMMENT #658=(CWideLineCOMMENT (CWidget 0 (3 #230# 0) 1 2 0 0 #650# 0100)COMMENT (LOGPEN 0 0 3381759) 2 (LOGBRUSH 026367 0) 1COMMENT 5.26759 5.38199 1 0.082322)COMMENT #659=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "Psi""@N" 1COMMENT 11.6276 5.22699 0 -10 1.24882 1.32375#658#)COMMENT #660=(CWideLineCOMMENT (CWidget 0 (3 #231# 0) 1 2 0 0 #650# 0100)COMMENT (LOGPEN 0 0 3381759) 2 (LOGBRUSH 026367 0) 1COMMENT 4.68976 4.85888 1 0.082322)COMMENT #661=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1

Page 63: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "RRE""@N" 1COMMENT 12.8556 0 0 -10 1.6984 1.32375 #660#)COMMENT #662=(CScratchCOMMENT (CWidget 0 (3 #232# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 3.83255 1.9COMMENT 0.082322 1)COMMENT #663=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0COMMENT "shRNA cloning site" "@N" 1 12.2853 -17.4233COMMENT 0 -10 6.96841 1.32375 #662#)COMMENT #664=(CScratchCOMMENT (CWidget 0 (3 #234# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 3.93121 1.9COMMENT 0.082322 1)COMMENT #665=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "5' LoxP""@N" 1COMMENT 10.9077 -15.681 0 -10 2.7474 1.32375#664#)COMMENT #666=(CScratchCOMMENT (CWidget 0 (3 #235# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 2.65369 1.9COMMENT 0.082322 1)COMMENT #667=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "3' LoxP""@N" 1COMMENT -7.80858 -12.1963 0 -10 2.7474 1.32375#666#)COMMENT #668=(CWideLine

Page 64: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CWidget 0 (3 #236# 0) 1 2 0 0 #650# 0100)COMMENT (LOGPEN 0 0 3381759) 2 (LOGBRUSH 026367 0)COMMENT 0.835356 2.26488 2.57991 1 0.082322)COMMENT #669=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "WRE""@N" 1COMMENT -9.66874 -8.71165 0 -10 1.873231.32375 #668#)))COMMENT #670=(CGroupWidget (CWidget 27 (7 27 0) 1 2 0 0 Nil0 100)COMMENT (CObjectListCOMMENT #671=(CScratchCOMMENT (CWidget 0 (3 #237# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 4.21722 1.9COMMENT 0.082322 1)COMMENT #672=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0COMMENT "Lox replace for" "@N" 1 13.823 -5.22699 0COMMENT -10 5.49481 1.32375 #671#)COMMENT #673=(CScratchCOMMENT (CWidget 0 (3 #238# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 4.02903 1.9COMMENT 0.082322 1)COMMENT #674=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "Loop outfor"COMMENT "@N" 1 12.4048 -12.1963 0 -10 4.520731.32375COMMENT #673#)COMMENT #675=(CScratch

Page 65: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CWidget 0 (3 #239# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 2.51193 1.9COMMENT 0.082322 1)COMMENT #676=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "Loop outrev"COMMENT "@N" 1 -10.0965 -10.454 0 -10 4.645611.32375COMMENT #675#)COMMENT #677=(CScratchCOMMENT (CWidget 0 (3 #240# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 5.86531 1.9COMMENT 0.082322 1)COMMENT #678=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0COMMENT "Lox replace rev" "@N" 1 8.5443512.1963 0COMMENT -10 5.61969 1.32375 #677#)COMMENT #679=(CScratchCOMMENT (CWidget 0 (3 #241# 0) 1 2 0 0 #617# 0100)COMMENT (LOGPEN 0 8 13395507) 10 1 3.58302 1.9COMMENT 0.082322 1)COMMENT #680=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0COMMENT "Lox replace rev" "@N" 1 9.2255 -33.1043 0COMMENT -10 5.61969 1.32375 #679#)))COMMENT #681=(CGroupWidget (CWidget 29 (7 29 0) 1 2 0 0 Nil0 100)COMMENT (CObjectListCOMMENT #682=(CWideArrowCOMMENT (CWideLine

Page 66: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CWidget 0 (3 #233# 0) 1 2 0 0 #649#0 100)COMMENT (LOGPEN 0 0 16750848) 1COMMENT (LOGBRUSH 0 16750848 0) 0.8353563.83255COMMENT 4.09287 1 0.082322) 0.8 1.8 0)COMMENT #683=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "U6Promotor"COMMENT "@N" 1 12.0599 -13.9386 0 -10 4.645611.32375COMMENT #682#)))COMMENT #684=(CGroupWidget (CWidget 51 (7 51 0) 1 2 0 0 Nil0 100)COMMENT (CObjectListCOMMENT #685=(CWideArrowCOMMENT (CWideLineCOMMENT (CWidget 0 (3 #229# 0) 1 2 0 0 #648#0 100)COMMENT (LOGPEN 0 0 65382) 2 (LOGBRUSH 065331 0)COMMENT 0.835356 2.66447 3.80105 1 0.082322)0.8 1.8COMMENT 0)COMMENT #686=(CLabel (CWidget 0 (0 0) 1 2 0 0 #609#0 100)COMMENT (LOGPEN 0 0 0) 1COMMENT (LOGFONT 46 17 0 0 700 0 0 0 0 3 2 134COMMENT "Arial") 1.74233 0.666667 0 "CMV-GFP""@N" 1COMMENT 4.111 -41.8159 0 -10 3.52167 1.32375#685#)))))COMMENT #687=(CGroupWidget (CWidget 11 (8 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #688=(CGroupWidgetCOMMENT (CWidget 1 (10 #2# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #689=(CScratchCOMMENT (CWidget 1 (1 #2# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.811 1.90.082322COMMENT 1)

Page 67: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #690=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bam}HI (2971)" "@N (@S)" 511.7397COMMENT -26.1349 0 -10 6.16917 1.07399#689#)))COMMENT #691=(CGroupWidgetCOMMENT (CWidget 1 (10 #4# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #692=(CScratchCOMMENT (CWidget 1 (1 #4# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.66861 1.9COMMENT 0.082322 1)COMMENT #693=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Eco}RI (4349)" "@N (@S)" 5 -9.29035COMMENT -13.9386 0 -10 5.79452 1.07399#692#)))COMMENT #694=(CGroupWidgetCOMMENT (CWidget 1 (10 #7# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #695=(CScratchCOMMENT (CWidget 1 (1 #7# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.2595 1.90.082322COMMENT 1)COMMENT #696=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Pst}I (2430)" "@N (@S)" 514.0552COMMENT -3.48466 0 -10 4.92035 1.07399#695#)))COMMENT #697=(CGroupWidget

Page 68: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CWidget 1 (10 #12# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #698=(CScratchCOMMENT (CWidget 1 (1 #12# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.97721 1.9COMMENT 0.082322 1)COMMENT #699=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Acc}65I (5183)" "@N (@S)" 5 -14.8964COMMENT 1.74233 0 -10 5.96936 1.07399 #698#)))COMMENT #700=(CGroupWidgetCOMMENT (CWidget 1 (10 #14# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #701=(CScratchCOMMENT (CWidget 1 (1 #14# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.66384 1.9COMMENT 0.082322 1)COMMENT #702=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Acc}III (5561)" "@N (@S)" 5 -15.2657COMMENT 8.71165 0 -10 5.61969 1.07399 #701#)))COMMENT #703=(CGroupWidgetCOMMENT (CWidget 1 (10 #20# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #704=(CScratchCOMMENT (CWidget 1 (1 #20# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.27628 1.9COMMENT 0.082322 1)COMMENT #705=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128

Page 69: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "{\\i Age}I (3616)" "@N (@S)" 55.38674COMMENT -38.3313 0 -10 5.07021 1.07399#704#)))COMMENT #706=(CGroupWidgetCOMMENT (CWidget 1 (10 #25# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #707=(CScratchCOMMENT (CWidget 1 (1 #25# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 0.578655 1.9COMMENT 0.082322 1)COMMENT #708=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Aos}I (6870)" "@N (@S)" 5 -10.3148COMMENT 20.908 0 -10 5.17011 1.07399 #707#)))COMMENT #709=(CGroupWidgetCOMMENT (CWidget 1 (10 #26# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #710=(CScratchCOMMENT (CWidget 1 (1 #26# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.10033 1.9COMMENT 0.082322 1)COMMENT #711=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Apa}I (2622)" "@N (@S)" 512.9867COMMENT -8.71165 0 -10 5.295 1.07399 #710#)))COMMENT #712=(CGroupWidgetCOMMENT (CWidget 1 (10 #32# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #713=(CScratchCOMMENT (CWidget 1 (1 #32# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.97721 1.9COMMENT 0.082322 1)COMMENT #714=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)

Page 70: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Asp}718 (5183)" "@N (@S)" 5 -14.6563COMMENT 3.48466 0 -10 6.09424 1.07399 #713#)))COMMENT #715=(CGroupWidgetCOMMENT (CWidget 1 (10 #33# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #716=(CScratchCOMMENT (CWidget 1 (1 #33# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 0.762697 1.9COMMENT 0.082322 1)COMMENT #717=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Asp}EI (6648)" "@N (@S)" 5 -12.2825COMMENT 17.4233 0 -10 5.8195 1.07399 #716#)))COMMENT #718=(CGroupWidgetCOMMENT (CWidget 1 (10 #38# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #719=(CScratchCOMMENT (CWidget 1 (1 #38# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 0.578655 1.9COMMENT 0.082322 1)COMMENT #720=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Avi}II (6870)" "@N (@S)" 5 -10.4514COMMENT 22.6503 0 -10 5.3949 1.07399 #719#)))COMMENT #721=(CGroupWidgetCOMMENT (CWidget 1 (10 #62# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #722=(CScratchCOMMENT (CWidget 1 (1 #62# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.66384 1.9

Page 71: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0.082322 1)COMMENT #723=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bse}AI (5561)" "@N (@S)" 5 -15.3516COMMENT 10.454 0 -10 5.49481 1.07399 #722#)))COMMENT #724=(CGroupWidgetCOMMENT (CWidget 1 (10 #71# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #725=(CScratchCOMMENT (CWidget 1 (1 #71# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.62675 1.9COMMENT 0.082322 1)COMMENT #726=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bsm}I (1987)" "@N (@S)" 514.6489COMMENT -1.74233 0 -10 5.295 1.07399 #725#)))COMMENT #727=(CGroupWidgetCOMMENT (CWidget 1 (10 #72# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #728=(CScratchCOMMENT (CWidget 1 (1 #72# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.10364 1.9COMMENT 0.082322 1)COMMENT #729=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bsp}120I (2618)" "@N (@S)" 513.5058COMMENT -6.96932 0 -10 6.59377 1.07399#728#)))COMMENT #730=(CGroupWidgetCOMMENT (CWidget 1 (10 #75# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectList

Page 72: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #731=(CScratchCOMMENT (CWidget 1 (1 #75# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.66384 1.9COMMENT 0.082322 1)COMMENT #732=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bsp}EI (5561)" "@N (@S)" 5 -15.5299COMMENT 12.1963 0 -10 5.59471 1.07399 #731#)))COMMENT #733=(CGroupWidgetCOMMENT (CWidget 1 (10 #82# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #734=(CScratchCOMMENT (CWidget 1 (1 #82# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.67773 1.9COMMENT 0.082322 1)COMMENT #735=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bsr}GI (4338)" "@N (@S)" 5 -9.33189COMMENT -17.4233 0 -10 5.74457 1.07399#734#)))COMMENT #736=(CGroupWidgetCOMMENT (CWidget 1 (10 #84# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #737=(CScratchCOMMENT (CWidget 1 (1 #84# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 5.36044 1.9COMMENT 0.082322 1)COMMENT #738=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bss}HII (1102)" "@N (@S)" 513.0979

Page 73: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 6.96932 0 -10 5.94438 1.07399 #737#)))COMMENT #739=(CGroupWidgetCOMMENT (CWidget 1 (10 #87# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #740=(CScratchCOMMENT (CWidget 1 (1 #87# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.82592 1.9COMMENT 0.082322 1)COMMENT #741=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bst}EII (2953)" "@N (@S)" 511.6929COMMENT -20.908 0 -10 5.86945 1.07399 #740#)))COMMENT #742=(CGroupWidgetCOMMENT (CWidget 1 (10 #92# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #743=(CScratchCOMMENT (CWidget 1 (1 #92# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.98053 1.9COMMENT 0.082322 1)COMMENT #744=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Bsu}36I (5179)" "@N (@S)" 5 -15.0161 0COMMENT 0 -10 5.99434 1.07399 #743#)))COMMENT #745=(CGroupWidgetCOMMENT (CWidget 1 (10 #104# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #746=(CScratchCOMMENT (CWidget 1 (1 #104# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.41348 1.9COMMENT 0.082322 1)COMMENT #747=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118

Page 74: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Drd}I (5863)" "@N (@S)" 5 -15.4863COMMENT 15.681 0 -10 5.24504 1.07399 #746#)))COMMENT #748=(CGroupWidgetCOMMENT (CWidget 1 (10 #109# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #749=(CScratchCOMMENT (CWidget 1 (1 #109# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 0.762697 1.9COMMENT 0.082322 1)COMMENT #750=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Eam}1105I (6648)" "@N (@S)" 5 -13.1881COMMENT 19.1656 0 -10 7.5179 1.07399 #749#)))COMMENT #751=(CGroupWidgetCOMMENT (CWidget 1 (10 #113# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #752=(CScratchCOMMENT (CWidget 1 (1 #113# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.2796 1.90.082322COMMENT 1)COMMENT #753=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Eco}47III (3612)" "@N (@S)" 56.27105COMMENT -36.5889 0 -10 6.74363 1.07399#752#)))COMMENT #754=(CGroupWidgetCOMMENT (CWidget 1 (10 #115# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #755=(CScratchCOMMENT (CWidget 1 (1 #115# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.97826 1.9COMMENT 0.082322 1)

Page 75: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #756=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Eco}NI (1563)" "@N (@S)" 514.7657COMMENT 1.74233 0 -10 5.69462 1.07399 #755#)))COMMENT #757=(CGroupWidgetCOMMENT (CWidget 1 (10 #124# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #758=(CScratchCOMMENT (CWidget 1 (1 #124# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 0.578655 1.9COMMENT 0.082322 1)COMMENT #759=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Fsp}I (6870)" "@N (@S)" 5 -10.3353COMMENT 24.3926 0 -10 5.14514 1.07399 #758#)))COMMENT #760=(CGroupWidgetCOMMENT (CWidget 1 (10 #134# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #761=(CScratchCOMMENT (CWidget 1 (1 #134# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.83255 1.9COMMENT 0.082322 1)COMMENT #762=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Hpa}I (2945)" "@N (@S)" 511.4834COMMENT -19.1656 0 -10 5.3949 1.07399 #761#)))COMMENT #763=(CGroupWidgetCOMMENT (CWidget 1 (10 #138# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #764=(CScratch

Page 76: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (CWidget 1 (1 #138# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 5.42178 1.9COMMENT 0.082322 1)COMMENT #765=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Kas}I (1028)" "@N (@S)" 512.3314COMMENT 10.454 0 -10 5.14514 1.07399 #764#)))COMMENT #766=(CGroupWidgetCOMMENT (CWidget 1 (10 #139# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #767=(CScratchCOMMENT (CWidget 1 (1 #139# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.97389 1.9COMMENT 0.082322 1)COMMENT #768=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Kpn}I (5187)" "@N (@S)" 5 -13.8462COMMENT 5.22699 0 -10 5.14514 1.07399 #767#)))COMMENT #769=(CGroupWidgetCOMMENT (CWidget 1 (10 #141# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #770=(CScratchCOMMENT (CWidget 1 (1 #141# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.16208 1.9COMMENT 0.082322 1)COMMENT #771=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Ksp}I (4960)" "@N (@S)" 5 -14.2207COMMENT -3.48466 0 -10 5.24504 1.07399#770#)))

Page 77: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #772=(CGroupWidgetCOMMENT (CWidget 1 (10 #150# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #773=(CScratchCOMMENT (CWidget 1 (1 #150# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 6.07422 1.9COMMENT 0.082322 1)COMMENT #774=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Mlu}I (241)" "@N (@S)" 5 5.811715.681COMMENT 0 -10 4.59566 1.07399 #773#)))COMMENT #775=(CGroupWidgetCOMMENT (CWidget 1 (10 #153# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #776=(CScratchCOMMENT (CWidget 1 (1 #153# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.66384 1.9COMMENT 0.082322 1)COMMENT #777=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Mro}I (5561)" "@N (@S)" 5 -15.4539COMMENT 13.9386 0 -10 5.22007 1.07399 #776#)))COMMENT #778=(CGroupWidgetCOMMENT (CWidget 1 (10 #164# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #779=(CScratchCOMMENT (CWidget 1 (1 #164# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 5.42095 1.9COMMENT 0.082322 1)COMMENT #780=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128

Page 78: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "{\\i Nar}I (1029)" "@N (@S)" 512.2346COMMENT 8.71165 0 -10 5.19509 1.07399 #779#)))COMMENT #781=(CGroupWidgetCOMMENT (CWidget 1 (10 #169# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #782=(CScratchCOMMENT (CWidget 1 (1 #169# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.28374 1.9COMMENT 0.082322 1)COMMENT #783=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Nhe}I (3607)" "@N (@S)" 55.57086COMMENT -34.8466 0 -10 5.27002 1.07399#782#)))COMMENT #784=(CGroupWidgetCOMMENT (CWidget 1 (10 #172# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #785=(CScratchCOMMENT (CWidget 1 (1 #172# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.80105 1.9COMMENT 0.082322 1)COMMENT #786=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Not}I (2983)" "@N (@S)" 511.1456COMMENT -27.8773 0 -10 5.14514 1.07399#785#)))COMMENT #787=(CGroupWidgetCOMMENT (CWidget 1 (10 #174# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #788=(CScratchCOMMENT (CWidget 1 (1 #174# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.77452 1.9COMMENT 0.082322 1)

Page 79: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #789=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Nsi}I (3015)" "@N (@S)" 510.7566COMMENT -31.3619 0 -10 4.8704 1.07399 #788#)))COMMENT #790=(CGroupWidgetCOMMENT (CWidget 1 (10 #178# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #791=(CScratchCOMMENT (CWidget 1 (1 #178# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.82012 1.9COMMENT 0.082322 1)COMMENT #792=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Pae}R7I (2960)" "@N (@S)" 511.8889COMMENT -22.6503 0 -10 6.31903 1.07399#791#)))COMMENT #793=(CGroupWidgetCOMMENT (CWidget 1 (10 #179# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #794=(CScratchCOMMENT (CWidget 1 (1 #179# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.37928 1.9COMMENT 0.082322 1)COMMENT #795=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Pfl}MI (4698)" "@N (@S)" 5 -12.9585COMMENT -6.96932 0 -10 5.64467 1.07399#794#)))COMMENT #796=(CGroupWidgetCOMMENT (CWidget 1 (10 #180# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectList

Page 80: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT #797=(CScratchCOMMENT (CWidget 1 (1 #180# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.27628 1.9COMMENT 0.082322 1)COMMENT #798=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Pin}AI (3616)" "@N (@S)" 55.60456COMMENT -40.0736 0 -10 5.49481 1.07399#797#)))COMMENT #799=(CGroupWidgetCOMMENT (CWidget 1 (10 #185# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #800=(CScratchCOMMENT (CWidget 1 (1 #185# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.77784 1.9COMMENT 0.082322 1)COMMENT #801=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Ppu}10I (3011)" "@N (@S)" 511.3622COMMENT -29.6196 0 -10 6.04429 1.07399#800#)))COMMENT #802=(CGroupWidgetCOMMENT (CWidget 1 (10 #189# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #803=(CScratchCOMMENT (CWidget 1 (1 #189# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 1.95151 1.9COMMENT 0.082322 1)COMMENT #804=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128

Page 81: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT "{\\i Pvu}II (5214)" "@N (@S)" 5 -14.2072COMMENT 6.96932 0 -10 5.41988 1.07399 #803#)))COMMENT #805=(CGroupWidgetCOMMENT (CWidget 1 (10 #194# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #806=(CScratchCOMMENT (CWidget 1 (1 #194# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.16208 1.9COMMENT 0.082322 1)COMMENT #807=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Sac}II (4960)" "@N (@S)" 5 -14.6699COMMENT -1.74233 0 -10 5.51978 1.07399#806#)))COMMENT #808=(CGroupWidgetCOMMENT (CWidget 1 (10 #196# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #809=(CScratchCOMMENT (CWidget 1 (1 #196# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 5.03629 1.9COMMENT 0.082322 1)COMMENT #810=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Sap}I (1493)" "@N (@S)" 514.1336COMMENT 3.48466 0 -10 5.07021 1.07399 #809#)))COMMENT #811=(CGroupWidgetCOMMENT (CWidget 1 (10 #209# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #812=(CScratchCOMMENT (CWidget 1 (1 #209# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 6.05681 1.9COMMENT 0.082322 1)COMMENT #813=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)

Page 82: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Spe}I (262)" "@N (@S)" 5 5.89556COMMENT 13.9386 0 -10 4.57068 1.07399 #812#)))COMMENT #814=(CGroupWidgetCOMMENT (CWidget 1 (10 #211# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #815=(CScratchCOMMENT (CWidget 1 (1 #211# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.67773 1.9COMMENT 0.082322 1)COMMENT #816=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Ssp}BI (4338)" "@N (@S)" 5 -9.23421COMMENT -15.681 0 -10 5.69462 1.07399 #815#)))COMMENT #817=(CGroupWidgetCOMMENT (CWidget 1 (10 #222# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #818=(CScratchCOMMENT (CWidget 1 (1 #222# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 2.37928 1.9COMMENT 0.082322 1)COMMENT #819=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Van}91I (4698)" "@N (@S)" 5 -14.1714COMMENT -5.22699 0 -10 6.29405 1.07399#818#)))COMMENT #820=(CGroupWidgetCOMMENT (CWidget 1 (10 #223# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #821=(CScratchCOMMENT (CWidget 1 (1 #223# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 4.09701 1.9

Page 83: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

COMMENT 0.082322 1)COMMENT #822=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Xba}I (2626)" "@N (@S)" 513.1194COMMENT -10.454 0 -10 5.295 1.07399 #821#)))COMMENT #823=(CGroupWidgetCOMMENT (CWidget 1 (10 #225# 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectListCOMMENT #824=(CScratchCOMMENT (CWidget 1 (1 #225# 1) 1 2 0 0 #616# 0100)COMMENT (LOGPEN 0 6 10053171) 8 1 3.82012 1.9COMMENT 0.082322 1)COMMENT #825=(CLabel (CWidget 0 (0 0) 1 2 0 0 #618#0 100)COMMENT (LOGPEN 0 0 153) 1COMMENT (LOGFONT 38 14 0 0 400 0 0 0 0 3 2 118COMMENT "Georgia") 1.74233 0.555556 128COMMENT "{\\i Xho}I (2960)" "@N (@S)" 511.4069COMMENT -24.3926 0 -10 5.34495 1.07399#824#)))))COMMENT #826=(CGroupWidget (CWidget 14 (16 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectList))COMMENT #827=(CGroupWidget (CWidget 12 (0 0) 1 2 0 0 Nil 0 100)COMMENT (CObjectList)))))COMMENT (CSeqView 10 10 (CObjectList) (CObList) 1 (CObList)) (CObList) 0COMMENT (CStringList) 0 0 (CObList)))FEATURES Location/Qualifiers 5'clip 2983..4353 /vntifkey="51" /label=CMV-GFP misc_feature 1076..1213 /vntifkey="21" /label=Psi misc_feature 1707..1910 /vntifkey="21" /label=RRE misc_feature 2945..2960 /vntifkey="21" /label=shRNA\cloning\site promoter 2631..2944

Page 84: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

/vntifkey="29" /label=U6\Promotor misc_feature 2826..2859 /vntifkey="21" /label=5'\LoxP misc_feature 4367..4400 /vntifkey="21" /label=3'\LoxP misc_feature 4456..4835 /vntifkey="21" /label=WRE primer 2481..2500 /vntifkey="27" /label=Lox\replace\for primer 2708..2733 /vntifkey="27" /label=Loop\out\for primer 4538..4561 /vntifkey="27" /label=Loop\out\rev primer 493..512 /vntifkey="27" /label=Lox\replace\rev primer 3246..3265 /vntifkey="27" /label=Lox\replace\revBASE COUNT 1999 a 1847 c 1901 g 1820 tORIGIN 1 gcttaagcgg tcgacggatc gggagatctc ccgatcccct atggtgcact ctcagtacaa 61 tctgctctga tgccgcatag ttaagccagt atctgctccc tgcttgtgtg ttggaggtcg 121 ctgagtagtg cgcgagcaaa atttaagcta caacaaggca aggcttgacc gacaattgca 181 tgaagaatct gcttagggtt aggcgttttg cgctgcttcg cgatgtacgg gccagatata 241 cgcgttgaca ttgattattg actagttatt aatagtaatc aattacgggg tcattagttc 301 atagcccata tatggagttc cgcgttacat aacttacggt aaatggcccg cctggctgac 361 cgcccaacga cccccgccca ttgacgtcaa taatgacgta tgttcccata gtaacgccaa 421 tagggacttt ccattgacgt caatgggtgg agtatttacg gtaaactgcc cacttggcag 481 tacatcaagt gtatcatatg ccaagtacgc cccctattga cgtcaatgac ggtaaatggc 541 ccgcctggca ttatgcccag tacatgacct tatgggactt tcctacttgg cagtacatct 601 acgtattagt catcgctatt accatggtga tgcggttttg gcagtacatc aatgggcgtg 661 gatagcggtt tgactcacgg ggatttccaa gtctccaccc cattgacgtc aatgggagtt 721 tgttttggca ccaaaatcaa cgggactttc caaaatgtcg taacaactcc gccccattga 781 cgcaaatggg cggtaggcgt gtacggtggg aggtctatat aagcagcgcg ttttgcctgt 841 actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac 901 ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg 961 ttgtgtgact ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct 1021 agcagtggcg cccgaacagg gacttgaaag cgaaagggaa accagaggag ctctctcgac 1081 gcaggactcg gcttgctgaa gcgcgcacgg caagaggcga ggggcggcga ctggtgagta 1141 cgccaaaaat tttgactagc ggaggctaga aggagagaga tgggtgcgag agcgtcagta

Page 85: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

1201 ttaagcgggg gagaattaga tcgcgatggg aaaaaattcg gttaaggcca gggggaaaga 1261 aaaaatataa attaaaacat atagtatggg caagcaggga gctagaacga ttcgcagtta 1321 atcctggcct gttagaaaca tcagaaggct gtagacaaat actgggacag ctacaaccat 1381 cccttcagac aggatcagaa gaacttagat cattatataa tacagtagca accctctatt 1441 gtgtgcatca aaggatagag ataaaagaca ccaaggaagc tttagacaag atagaggaag 1501 agcaaaacaa aagtaagacc accgcacagc aagcggccgg ccgcgctgat cttcagacct 1561 ggaggaggag atatgaggga caattggaga agtgaattat ataaatataa agtagtaaaa 1621 attgaaccat taggagtagc acccaccaag gcaaagagaa gagtggtgca gagagaaaaa 1681 agagcagtgg gaataggagc tttgttcctt gggttcttgg gagcagcagg aagcactatg 1741 ggcgcagcgt caatgacgct gacggtacag gccagacaat tattgtctgg tatagtgcag 1801 cagcagaaca atttgctgag ggctattgag gcgcaacagc atctgttgca actcacagtc 1861 tggggcatca agcagctcca ggcaagaatc ctggctgtgg aaagatacct aaaggatcaa 1921 cagctcctgg ggatttgggg ttgctctgga aaactcattt gcaccactgc tgtgccttgg 1981 aatgctagtt ggagtaataa atctctggaa cagatttgga atcacacgac ctggatggag 2041 tgggacagag aaattaacaa ttacacaagc ttaatacact ccttaattga agaatcgcaa 2101 aaccagcaag aaaagaatga acaagaatta ttggaattag ataaatgggc aagtttgtgg 2161 aattggttta acataacaaa ttggctgtgg tatataaaat tattcataat gatagtagga 2221 ggcttggtag gtttaagaat agtttttgct gtactttcta tagtgaatag agttaggcag 2281 ggatattcac cattatcgtt tcagacccac ctcccaaccc cgaggggacc cgacaggccc 2341 gaaggaatag aagaagaagg tggagagaga gacagagaca gatccattcg attagtgaac 2401 ggatcggcac tgcgtgcgcc aattctgcag acaaatggca gtattcatcc acaattttaa 2461 aagaaaaggg gggattgggg ggtacagtgc aggggaaaga atagtagaca taatagcaac 2521 agacatacaa actaaagaat tacaaaaaca aattacaaaa attcaaaatt ttcgggttta 2581 ttacagggac agcagagatc cagtttggtt agtaccgggc ccgctctaga gatccgacgc 2641 cgccatctct aggcccgcgc cggccccctc gcacagactt gtgggagaag ctcggctact 2701 cccctgcccc ggttaatttg catataatat ttcctagtaa ctatagaggc ttaatgtgcg 2761 ataaaagaca gataatctgt tctttttaat actagctaca ttttacatga taggcttgga 2821 tttctataac ttcgtatagc atacattata cgaagttata catgtcacaa aaggaaactc 2881 accctaactg taaagtaatt gtgtgttttg agactataaa tatcccttgg agaaaagcct 2941 tgttaacgcg cggtgaccct cgagtactag gatccattag gcggccgcgt ggataaccgt 3001 attaccgcca tgcattagtt attaatagta atcaattacg gggtcattag ttcatagccc 3061 atatatggag ttccgcgtta cataacttac ggtaaatggc ccgcctggct gaccgcccaa 3121 cgacccccgc ccattgacgt caataatgac gtatgttccc atagtaacgc caatagggac 3181 tttccattga cgtcaatggg tggagtattt acggtaaact gcccacttgg cagtacatca 3241 agtgtatcat atgccaagta cgccccctat tgacgtcaat gacggtaaat ggcccgcctg 3301 gcattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca tctacgtatt 3361 agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc gtggatagcg 3421 gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga gtttgttttg 3481 gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat tgacgcaaat 3541 gggcggtagg cgtgtacggt gggaggtcta tataagcaga gctggtttag tgaaccgtca 3601 gatccgctag cgctaccggt cgccaccatg gtgagcaagg gcgaggagct gttcaccggg 3661 gtggtgccca tcctggtcga gctggacggc gacgtaaacg gccacaagtt cagcgtgtcc 3721 ggcgagggcg agggcgatgc cacctacggc aagctgaccc tgaagttcat ctgcaccacc 3781 ggcaagctgc ccgtgccctg gcccaccctc gtgaccaccc tgacctacgg cgtgcagtgc 3841 ttcagccgct accccgacca catgaagcag cacgacttct tcaagtccgc catgcccgaa 3901 ggctacgtcc aggagcgcac catcttcttc aaggacgacg gcaactacaa gacccgcgcc 3961 gaggtgaagt tcgagggcga caccctggtg aaccgcatcg agctgaaggg catcgacttc 4021 aaggaggacg gcaacatcct ggggcacaag ctggagtaca actacaacag ccacaacgtc

Page 86: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

4081 tatatcatgg ccgacaagca gaagaacggc atcaaggtga acttcaagat ccgccacaac 4141 atcgaggacg gcagcgtgca gctcgccgac cactaccagc agaacacccc catcggcgac 4201 ggccccgtgc tgctgcccga caaccactac ctgagcaccc agtccgccct gagcaaagac 4261 cccaacgaga agcgcgatca catggtcctg ctggagttcg tgaccgccgc cgggatcact 4321 ctcggcatgg acgagctgta caagtaggaa ttcgtcgagg gacctaataa cttcgtatag 4381 catacattat acgaagttat acatgtttaa gggttccggt tccactaggt acaattcgat 4441 atcaagctta tcgataatca acctctggat tacaaaattt gtgaaagatt gactggtatt 4501 cttaactatg ttgctccttt tacgctatgt ggatacgctg ctttaatgcc tttgtatcat 4561 gctattgctt cccgtatggc tttcattttc tcctccttgt ataaatcctg gttgctgtct 4621 ctttatgagg agttgtggcc cgttgtcagg caacgtggcg tggtgtgcac tgtgtttgct 4681 gacgcaaccc ccactggttg gggcattgcc accacctgtc agctcctttc cgggactttc 4741 gctttccccc tccctattgc cacggcggaa ctcatcgccg cctgccttgc ccgctgctgg 4801 acaggggctc ggctgttggg cactgacaat tccgtggtgt tgtcggggaa atcatcgtcc 4861 tttccttggc tgctcgcctg tgttgccacc tggattctgc gcgggacgtc cttctgctac 4921 gtcccttcgg ccctcaatcc agcggacctt ccttcccgcg gcctgctgcc ggctctgcgg 4981 cctcttccgc gtcttcgcct tcgccctcag acgagtcgga tctccctttg ggccgcctcc 5041 ccgcatcgat accgtcgacc tcgatcgaga cctagaaaaa catggagcaa tcacaagtag 5101 caatacagca gctaccaatg ctgattgtgc ctggctagaa gcacaagagg aggaggaggt 5161 gggttttcca gtcacacctc aggtaccttt aagaccaatg acttacaagg cagctgtaga 5221 tcttagccac tttttaaaag aaaagggggg actggaaggg ctaattcact cccaacgaag 5281 acaagatatc cttgatctgt ggatctacca cacacaaggc tacttccctg attggcagaa 5341 ctacacacca gggccaggga tcagatatcc actgaccttt ggatggtgct acaagctagt 5401 accagttgag caagagaagg tagaagaagc caatgaagga gagaacaccc gcttgttaca 5461 ccctgtgagc ctgcatggga tggatgaccc ggagagagaa gtattagagt ggaggtttga 5521 cagccgccta gcatttcatc acatggcccg agagctgcat ccggactgta ctgggtctct 5581 ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa 5641 gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc 5701 tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gcagcatgtg 5761 agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg cgtttttcca 5821 taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga ggtggcgaaa 5881 cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc 5941 tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc 6001 gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc gctccaagct 6061 gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg 6121 tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca ctggtaacag 6181 gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt ggcctaacta 6241 cggctacact agaagaacag tatttggtat ctgcgctctg ctgaagccag ttaccttcgg 6301 aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg gtggtttttt 6361 tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt 6421 ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag 6481 attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat 6541 ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc 6601 tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg tcgtgtagat 6661 aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac cgcgagaccc 6721 acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg ccgagcgcag 6781 aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc gggaagctag 6841 agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta caggcatcgt 6901 ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac gatcaaggcg

Page 87: LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004web.mit.edu/jacks-lab/protocols/pSicoR-GFPSequence.pdf · LOCUS pSicoR-GFP 7567 bp DNA circular 18-JUN-2004 SOURCE ORGANISM COMMENT

6961 agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc ctccgatcgt 7021 tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac tgcataattc 7081 tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact caaccaagtc 7141 attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa tacgggataa 7201 taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt cttcggggcg 7261 aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca ctcgtgcacc 7321 caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa aaacaggaag 7381 gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac tcatactctt 7441 cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg gatacatatt 7501 tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc gaaaagtgcc 7561 acctgac//