Lippincott Williams & Wilkins€¦ · Web viewThe normalized counterparts of the clustering...
Transcript of Lippincott Williams & Wilkins€¦ · Web viewThe normalized counterparts of the clustering...
Supplementary MaterialsSupplementary Methods
Network Analysis
Both local and global network properties were studied using the MATLAB Brain
Connectivity Toolbox (Rubinov and Sporns, 2010).
Local Network Analysis
To characterize the general structure of the network in the local (nodal) level, the nodal
degree of the various ROIs was explored. The nodal degree of node i was defined,
Dnod ( i )= ∑j ≠ i∈G
e ij
Where e ij is the number of neighbors of node i.
Network density, the proportion of existing connections in the network out of all possible
connections, based on the entire network’s degree, was also calculated,
κ= 2 EN (N−1 )
Global Network Analysis
To look at the topological organization of the studied networks, six global network
metrics were explored. These included four parameters used to calculate small-worldness
– clustering coefficient C p, harmonic mean of shortest path lengths Lp, and their
normalized counterparts, γ and λ, as well as global and local efficiency parameters.
The clustering coefficient was defined according to (Watts and Strogatz, 1998), for a
given graph G with N nodes,
C p=1N ∑
i∈G
EDnod(i)(D nod ( i )−1)/2
Where Dnod(i) is the nodal degree of node i, and Ei is the number of edges in Gi, the
subgraph of i's neighbors.
The harmonic mean of the characteristic path length, chosen since most of our networks
are at least partially disconnected and therefore contain infinite paths, was defined
according to (Newman, 2003),
Lp=1
12N (N+1)
∑i ≥ jd ij
−1
Where d ij is the distance from node i to node j, and in which infinite values of d ij
contribute nothing to the sum, thus solving the disconnection issue.
The normalized counterparts of the clustering coefficient and characteristic path length (
γ=C preal /C p
rand and λ=Lpreal/Lp
rand, respectively, as in (Watts and Strogatz, 1998)), were
calculated, where the random variables represent the means of corresponding metrics
extracted from 100 matched random networks, preserving numbers of nodes, edges, and
degree distributions as the real networks (Maslov and Sneppen, 2002). A typical small-
world network should exhibit γ>1 and λ≈1.
Global and local efficiencies were defined according to (Latora and Marchiori, 2001),
Eglob=1
N (N−1) ∑i ≠ j∈G
1d ij
Eloc=1N∑
i∈GEglob(i)
Where Eglob is the global efficiency of Gi, the subgraph of i's neighbors.
Modularity, a measure of network segregation quantifying the degree to which the network may be subdivided into non-overlapping groups of ROIs which are densely interconnected within and sparsely connected without, was calculated according to (Newman, 2006).
Supplementary Figures
00.10.20.30.40.50.60.70.80.9
1
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Dens
ity
Correlation Threshold
Network Density (Left Hemisphere)
HC NMOSD CIS-ON CIS-nON
00.10.20.30.40.50.60.70.80.9
1
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Dens
ity
Correlation Threshold
Network Density (Right Hemisphere)
HC NMOSD CIS-ON CIS-nON
A B
00.10.20.30.40.50.60.70.80.9
1
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Glob
al Effi
cien
cy
Correlation Threshold
Global Efficiency (Left Hemisphere)
HC NMOSD CIS-ON CIS-nON
00.10.20.30.40.50.60.70.80.9
1
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Glob
al Effi
cien
cy
Correlation Threshold
Global Efficiency (Right Hemisphere)
HC NMOSD CIS-ON CIS-nON
C D
0
5
10
15
20
25
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Char
Pat
h
Correlation Threshold
Characteristic Path Length (Left Hemisphere)
HC NMOSD CIS-ON CIS-nON
0
5
10
15
20
25
30
35
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Char
Pat
h
Correlation Threshold
Characteristic Path Length (Right Hemisphere)
HC NMOSD CIS-ON CIS-nON
E F
0
0.2
0.4
0.6
0.8
1
1.2
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Mod
ular
ity
Correlation Threshold
Modularity (Left Hemisphere)
HC NMOSD CIS-ON CIS-nON
0
0.2
0.4
0.6
0.8
1
1.2
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
Mod
ular
ity
Correlation Threshold
Modularity (Right Hemisphere)
HC NMOSD CIS-ON CIS-nON
HG
Figure e-1: Visual network graph theory metrics for both hemispheres over entire range of correlation thresholds (0.1-0.5; 0.05 increments). (A-B) Density; (C-D) Global efficiency; (E-F) Harmonized mean of characteristic path length; (G-H) Modularity.
A B
C D
0
0.5
1
1.5
2
2.5
3
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
HC (Left Hemisphere)
gamma lambda
0
0.5
1
1.5
2
2.5
3
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
HC (Right Hemisphere)
gamma lambda
0
0.5
1
1.5
2
2.5
3
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
NMOSD (Left Hemisphere)
gamma lambda
0
0.5
1
1.5
2
2.5
3
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
NMOSD (Right Hemisphere)
gamma lambda
E F
HG
0
0.5
1
1.5
2
2.5
3
3.5
4
4.5
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
CIS-ON (Left Hemisphere)
gamma lambda
0
0.2
0.4
0.6
0.8
1
1.2
1.4
1.6
1.8
2
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
CIS-ON (Right Hemisphere)
gamma lambda
0
0.5
1
1.5
2
2.5
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
CIS-nON (Left Hemisphere)
gamma lambda
0
1
2
3
4
5
6
7
0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
CIS-nON (Right Hemisphere)
gamma lambda
Figure e-2: small-world criteria curves (γ in blue, λ in orange). Values were calculated for each subject's visual network and averaged for each group and are presented for both hemispheres. (A-B) HC; (C-D) NMOSD; (E-F) CIS-ON; (G-H) CIS-nON. For the entire range of correlation thresholds, all networks shown γ>1 and λ≈1, suggesting small-worldness.
Healthy Controls NMOSD CIS-ON CIS-nON-motorCIS-nON-other
Healthy Controls NMOSD CIS-ON CIS-nON-motorCIS-nON-other
Healthy Controls NMOSD CIS-ON CIS-nON-motorCIS-nON-other
Healthy Controls NMOSD CIS-ON CIS-nON-motorCIS-nON-other
A
D
B
C
Puta
men
Deg
ree
IFG
-PO
Deg
ree
Dens
ity
Glo
bal E
ffici
ency
* * * ***
** *
Figure e-3: Motor network analysis results. (A) group degree for motor putamen; (B) group degree for IFG-PO; (C) motor network density; (D) motor network global efficiency. * represents significant difference from healthy control group. ** represents significant difference from NMOSD group.
Figure e-4: Average degree of all four subject groups for selected regions of the three region subdivisions (right hemisphere). HCs in blue, NMOSD in green, CIS-ON in red, CIS-nON in orange. (A) hMT (dorsal-lateral subdivision); (B) VO1 (ventral-temporal) subdivision; (C) FEF (parietal-frontal subdivision). * Significantly different than HC, p < 0.05 after multiple comparisons correction.
Figure e-5: Segregation and integration metrics for all four subject groups (right hemisphere). HCs in blue, NMOSD in green, CIS-ON in red, CIS-nON in orange. (A) Modularity; (B) Harmonized mean of characteristic path length; (C) Global efficiency. * significantly different than HC; ** significantly different than NMOSD, p < 0.05, after multiple comparisons correction.
Figure e-6: Motor network analysis results (left hemisphere). (A) group degree for motor putamen; (B) group degree for IFG-PO; (C) motor network density; (D) motor network global efficiency.
Supplementary Tables
Table e-1: Regions of Interest Names and Coordinates
(A) Visual Network (B) Motor Network
ROI Coordinates in MNI
(Left hemisphere; Right
hemisphere)
ROI Coordinates in MNI
(Left hemisphere;
Right hemisphere)
Ventral-Temporal M1 (precentral) -38, -32, 54; 34, -30, 54
V1v -6, -82, -3; 9, -80, -1 SMA -8, -8, 47; 8, -8, 45
V2v -10, -78, -8; 10, -76, -7 IFG PO -48, 4, 13; 46, 4, 23
V3v -18, -76, -10; 18, -72, -8 IFG PT -57, 17, 1; 48, 18, -2
hV4 -27, -77, -12; 29, -76, -11 Motor Putamen -26, -4, -4; 26, -8, -6
VO1 -27, -68, -10; 27,-65, -9 Dorsolateral Premotor Cortex -17, -28, 42; 35, -16, 44
VO2 -26, -60, -10; 26, -57, -8
PHC1 -25, -52, -9; 26, -50, -8
PHC2 -26, -42, -9; 27, -42, -10
Dorso-Lateral
V1d -8, -89, 4; 11, -87, 7
V2d -10, -91, 12; 14, -88, 15
V3d -17, -89, 15; 21, -86, 17
MST -47, -66, 8; 47, -60, 7
hMT -45, -74, 7; 48, -67, 8
LO1 -33, -83, 8; 36, -81, 9
LO2 -40, -80, 7; 42, -75, 8
V3a -18, -85, 23; 22, -82, 27
V3b -29, -84, 15; 34, -80, 17
Parietal and Frontal
IPS0 -25, -75, 31; 29, -73, 32
IPS1 -22, -69, 40; 26, -67, 40
IPS2 -20, -66, 47; 24, -63, 48
IPS3 -22, -59, 53; 24, -58, 53
IPS4 -27, -54, 52; 28, -52, 54
IPS5 -32, -47, 51; 32, -46, 54
SPL1 -9, -58, 53; 11, -54, 57
FEF -31, -2, 52; 30, -2, 52
V1 = primary visual cortex; V2 = secondary visual cortex; V3 = visual area V3; (v = ventral; d = dorsal);
hV4 = human visual region V4; VO = ventral occipital cortex; PHC = ; MST = medial superior temporal
area; hMT = human middle temporal region; LO = lateral occipital cortex; IPS = intraparietal sulcus; SPL =
superior parietal lobule; FEF = frontal eye field; M1 = primary motor cortex; SMA = supplementary motor
area; IFG = inferior frontal gyrus ; PO = pars opercularis; PT = pars triangularis.
Table e-2: mean region degrees for visual network by hemisphere (mean±SD)
Region HC NMOSD CIS-ON CIS-nONLeft Hemisphere
V1v 7.704±2.321 6.487±2.534 6.05±2.693 4.662±2.872V1d 7.185±2.273 6.061±2.704 6.011±3.185 4.524±2.854V2v 7.613±2.216 6.798±2.349 5.95±3.056 4.890±3.089V2d 7.588±2.078 6.330±2.630 6.186±2.960 5.083±2.720V3v 7.204±2.456 6.024±2.727 5.422±3.334 4.590±3.081V3d 7.640±2.082 6.270±2.740 5.817±3.062 4.614±2.939hV4 7.438±2.339 6.419±2.682 6.236±3.021 5.205±3.090VO1 7.185±2.436 5.996±2.822 5.386±3.068 5.131±3.044VO2 7.181±2.733 5.854±2.982 5.572±3.540 4.748±3.180PHC1 6.733±2.493 5.807±2.877 5.583±3.287 4.662±2.658PHC2 5.244±2.799 5.324±2.903 3.994±3.026 3.169±2.655MST 7.321±2.381 5.230±2.740 5.161±2.858 4.545±3.064hMT 7.165±2.293 5.880±2.752 5.861±2.726 4.286±2.422LO2 6.912±2.373 6.083±2.136 5.675±3.119 5.162±2.795LO1 7.377±2.328 6.489±2.432 6.003±3.069 4.869±2.652V3a 7.394±2.427 6.187±2.475 6.019±3.234 4.983±2.865V3b 7.387±2.176 5.989±3.051 5.967±3.308 3.617±2.766IPS0 7.479±2.590 6.35±3.213 5.567±2.841 4.762±3.067IPS1 7.321±2.276 5.939±2.903 4.747±2.911 4.848±2.867IPS2 6.190±2.840 5.222±2.870 5.347±2.807 3.860±2.666IPS3 5.588±2.483 5.430±2.980 4.883±2.981 4.552±2.208IPS4 5.504±2.520 4.935±2.768 4.072±2.258 4.417±2.806IPS5 5.556±2.386 4.646±2.278 4.858±2.989 3.788±2.550SPL1 5.337±2.774 5.348±2.347 3.758±2.687 3.540±2.267FEF 4.135±2.452 4.120±2.080 2.7±1.816 2.717±1.937
Right HemisphereV1v 6.719±2.496 6.115±2.724 6.158±2.941 4.145±3.048V1d 6.931±2.448 5.124±2.802 5.978±3.155 5.186±2.848V2v 7.273±2.457 6.072±2.441 6.328±2.573 5.262±2.567V2d 7.531±2.005 6.189±2.380 6.347±3.212 4.888±2.820V3v 7.377±2.273 5.724±2.711 5.825±2.727 5.388±2.788V3d 7.515±2.217 6.230±2.479 6.181±3.250 5.052±2.716hV4 6.758±2.997 5.391±2.545 5.825±2.899 4.964±3.190VO1 7.275±2.078 5.676±2.826 5.564±3.293 5.079±3.154VO2 6.919±2.475 5.796±2.676 6.347±3.296 4.693±2.783PHC1 6.496±2.553 5.735±2.637 5.858±3.241 4.600±2.917PHC2 5.331±2.918 5.200±2.547 5.092±2.650 3.729±2.887MST 6.979±2.650 5.315±3.013 4.956±3.409 4.300±3.072hMT 7.352±2.195 6.163±2.588 6.447±2.618 4.917±2.852LO2 6.958±2.273 5.913±2.673 5.714±3.282 5.202±2.944LO1 6.638±2.504 5.735±2.515 5.522±2.862 5.262±2.780
Region HC NMOSD CIS-ON CIS-nONV3a 7.387±2.456 6.124±2.642 6.219±2.781 5.388±2.957V3b 7.462±2.475 6.083±2.263 6.361±2.849 5.083±3.132IPS0 6.010±2.621 5.670±2.750 5.919±2.885 4.690±3.110IPS1 6.367±2.881 5.880±2.624 5.278±3.201 4.581±3.116IPS2 6.110±3.020 5.143±2.580 5.169±2.506 4.402±2.883IPS3 6.098±3.016 5.374±2.765 5.914±2.668 4.781±3.011IPS4 5.713±3.011 5.330±2.555 5.247±2.933 4.279±2.481IPS5 5.112±2.299 4.907±2.768 4.675±3.189 4.245±2.843SPL1 4.835±2.756 4.574±2.410 4.964±2.664 3.957±2.459FEF 4.102±2.230 4.193±2.897 3.561±2.164 2.464±2.175
V1 = primary visual cortex; V2 = secondary visual cortex; V3 = visual area V3; (v = ventral; d = dorsal); hV4 = human visual region V4; VO = ventral occipital cortex; PHC = ; MST = medial superior temporal area; hMT = human middle temporal region; LO = lateral occipital cortex; IPS = intraparietal sulcus; SPL = superior parietal lobule; FEF = frontal eye field
Table e-3: local region efficiency for visual network by hemisphere (mean±SD)
Region HC NMOSD CIS-ON CIS-nONLeft Hemisphere
V1v 0.386±0.070 0.373±0.083 0.350±0.121 0.289±0.120V1d 0.394±0.065 0.364±0.093 0.350±0.117 0.315±0.129V2v 0.394±0.067 0.378±0.061 0.352±0.113 0.298±0.127V2d 0.395±0.057 0.387±0.068 0.370±0.111 0.330±0.107V3v 0.405±0.046 0.374±0.076 0.352±0.112 0.304±0.115V3d 0.402±0.049 0.398±0.047 0.344±0.138 0.295±0.124hV4 0.389±0.064 0.358±0.083 0.357±0.105 0.321±0.106VO1 0.397±0.056 0.369±0.084 0.316±0.125 0.305±0.129VO2 0.381±0.079 0.388±0.076 0.334±0.124 0.315±0.124PHC1 0.383±0.085 0.374±0.074 0.336±0.116 0.320±0.114PHC2 0.329±0.120 0.355±0.098 0.259±0.146 0.258±0.126MST 0.391±0.052 0.365±0.090 0.317±0.121 0.284±0.114hMT 0.399±0.054 0.394±0.044 0.355±0.100 0.312±0.115LO2 0.414±0.035 0.402±0.036 0.328±0.123 0.308±0.110LO1 0.401±0.044 0.389±0.044 0.325±0.135 0.308±0.103V3a 0.409±0.039 0.396±0.050 0.339±0.120 0.308±0.115V3b 0.409±0.049 0.363±0.085 0.337±0.117 0.270±0.108IPS0 0.367±0.084 0.333±0.101 0.328±0.111 0.297±0.115IPS1 0.359±0.076 0.340±0.090 0.329±0.084 0.298±0.114IPS2 0.376±0.060 0.368±0.074 0.339±0.072 0.284±0.104IPS3 0.392±0.039 0.366±0.083 0.325±0.077 0.325±0.072IPS4 0.408±0.040 0.371±0.087 0.345±0.094 0.329±0.091IPS5 0.400±0.037 0.352±0.090 0.320±0.105 0.305±0.097SPL1 0.384±0.058 0.374±0.064 0.332±0.087 0.303±0.109FEF 0.356±0.082 0.336±0.091 0.266±0.128 0.239±0.110
Right HemisphereV1v 0.386±0.072 0.347±0.090 0.341±0.124 0.290±0.136V1d 0.382±0.057 0.355±0.099 0.344±0.117 0.324±0.124V2v 0.389±0.067 0.372±0.074 0.361±0.091 0.345±0.095V2d 0.393±0.053 0.388±0.041 0.345±0.117 0.323±0.112V3v 0.399±0.045 0.345±0.101 0.337±0.091 0.318±0.107V3d 0.397±0.052 0.374±0.063 0.342±0.137 0.327±0.104hV4 0.377±0.089 0.357±0.085 0.354±0.116 0.316±0.116VO1 0.403±0.049 0.356±0.089 0.330±0.125 0.307±0.121VO2 0.396±0.058 0.384±0.066 0.347±0.123 0.296±0.115PHC1 0.382±0.073 0.367±0.078 0.360±0.128 0.286±0.112PHC2 0.350±0.095 0.356±0.080 0.339±0.122 0.255±0.130MST 0.392±0.053 0.341±0.124 0.304±0.135 0.270±0.110hMT 0.393±0.056 0.371±0.080 0.370±0.087 0.305±0.114LO2 0.406±0.043 0.391±0.069 0.331±0.132 0.318±0.101LO1 0.415±0.040 0.390±0.059 0.322±0.127 0.335±0.096
Region HC NMOSD CIS-ON CIS-nONV3a 0.393±0.057 0.386±0.064 0.333±0.110 0.336±0.098V3b 0.377±0.068 0.367±0.065 0.351±0.111 0.306±0.116IPS0 0.348±0.094 0.342±0.095 0.341±0.093 0.288±0.114IPS1 0.343±0.094 0.345±0.084 0.331±0.090 0.295±0.130IPS2 0.355±0.094 0.380±0.054 0.351±0.092 0.296±0.123IPS3 0.391±0.051 0.384±0.038 0.350±0.080 0.314±0.101IPS4 0.400±0.042 0.371±0.072 0.349±0.093 0.342±0.095IPS5 0.397±0.046 0.367±0.072 0.353±0.092 0.319±0.095SPL1 0.381±0.093 0.385±0.071 0.352±0.091 0.293±0.105FEF 0.351±0.101 0.340±0.110 0.304±0.114 0.263±0.140
V1 = primary visual cortex; V2 = secondary visual cortex; V3 = visual area V3; (v = ventral; d = dorsal); hV4 = human visual region V4; VO = ventral occipital cortex; PHC = ; MST = medial superior temporal area; hMT = human middle temporal region; LO = lateral occipital cortex; IPS = intraparietal sulcus; SPL = superior parietal lobule; FEF = frontal eye field
e-References
Latora V, Marchiori M. Efficient behavior of small-world networks. Physical review letters 2001; 87(19): 198701.Maslov S, Sneppen K. Specificity and stability in topology of protein networks. Science 2002; 296(5569): 910-3.Newman ME. The structure and function of complex networks. SIAM review 2003; 45(2): 167-256.Newman ME. Modularity and community structure in networks. Proceedings of the national academy of sciences 2006; 103(23): 8577-82.Rubinov M, Sporns O. Complex network measures of brain connectivity: uses and interpretations. Neuroimage 2010; 52(3): 1059-69.Watts DJ, Strogatz SH. Collective dynamics of ‘small-world’networks. nature 1998; 393(6684): 440.