Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed....

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Lecture 11. Basis Functions & Basis Set • Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 • Essentials of Computational Chemistry. Theories and Models, C. J. Cramer, (2 nd Ed. Wiley, 2004) Ch. 6 • Molecular Modeling, A. R. Leach (2 nd ed. Prentice Hall, 2001) Ch. 2 • Introduction to Computational Chemistry, F. Jensen (2 nd ed. 2006) Ch. 3 • Computational chemistry: Introduction to the theory and applications of molecular and quantum mechanics, E. Lewars (Kluwer, 2004) Ch. 5 • LCAO-MO: Hartree-Fock-Roothaan-Hall equation,

Transcript of Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed....

Page 1: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Lecture 11. Basis Functions & Basis Set

• Molecular Quantum Mechanics, Atkins & Friedman (4th ed. 2005), Ch. 9.1-9.6

• Essentials of Computational Chemistry. Theories and Models, C. J. Cramer, (2nd Ed. Wiley, 2004) Ch. 6• Molecular Modeling, A. R. Leach (2nd ed. Prentice Hall, 2001) Ch. 2• Introduction to Computational Chemistry, F. Jensen (2nd ed. 2006) Ch. 3

• Computational chemistry: Introduction to the theory and applications of molecular and quantum mechanics, E. Lewars (Kluwer, 2004) Ch. 5

• LCAO-MO: Hartree-Fock-Roothaan-Hall equation, C. C. J. Roothaan, Rev. Mod. Phys. 23, 69 (1951)

• EMSL Basis Set Exchange https://bse.pnl.gov/bse/portal• Basis Sets Lab Activity http://www.shodor.org/chemviz/basis/teachers/background.html

Page 2: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

= ij

Hartree-Fock Self-Consistent-Field Methodbased on Slater determinants (Hartree+Pauli)

(J. C. Slater & V. Fock, 1930) (Review)

• Each has variational parameters (to be changed to minimize E) including the effective nuclear charge (instead of the formal nuclear charge Z)

• Variational condition

• Variation with respect to the one-electron orbitals {i}, which are orthonormal

or its combination for lower E

Page 3: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Hartree-Fock equation (One-electron equation)

- Two-electron repulsion operator (1/rij) is replaced by one-electron operator VHF(i), which takes it into account in an “average” way.

- Any one electron sees only the spatially averaged position of all other electrons.

- VHF(i) is spherically symmetric.

- (Instantaneous) electron correlation is ignored.

- Spherical harmonics (s, p, d, …) are validangular-part eigenfunction (as for H-like atoms).

- Radial-part eigenfunction of H-like atoms are not valid any more. optimized

spherically symmetricVeff includes

&

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Solution of HF-SCF equation gives

Page 5: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Basis set to expand atomic orbitalsin the one-electron Hartree-Fock equations

• Larger basis set give higher-quality wave functions and lower energies(but they are more computationally-demanding).

• H-atom orbitals• Slater type orbitals (STO; Slater)• Gaussian type orbitals (GTO; Boys)• Numerical basis functions

: a set of L preset basis functions(complete if )

Page 6: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Basis set (a set of basis functions)

or r2

Slater type (STO)

Gaussian-type (GTO)

larger basis set

lower energy

Page 7: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

...3,2,1 with 32 222

02

42

nne

eZEn

2

2

2n

ZEn or in atomic unit (hartree)

Each state is designated by four (3+1) quantum numbers n, l, ml, and ms.

Ground state

Hydrogen-Like (1-Electron) Atom Orbitals

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Hydrogen-Like (1-Electron) Atom Orbitals

Page 9: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Radial Wave Functions Rnl

1s

2s

2p

3s

3p

3d

*Reduced distance

*Bohr Radius

2

20

0

4

ema

e

0

2

a

ZrRadial node

(ρ = 4, ) Zar /2 0

2 nodesnode

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STO Basis Functions

• Correct cusp behavior (finite derivative) at r 0• Desired exponential decay at r • Correctly mimic the H atom orbitals• Would be more natural choice• No analytic method to evaluate the coulomb and XC (or exchange) integrals

GTO Basis Functions

• Wrong cusp behavior (zero slope) at r 0• Wrong decay behavior (too rapid) at r • Analytic evaluation of the coulomb and XC (or exchange) integrals

(The product of the gaussian "primitives" is another gaussian.)

Page 11: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.
Page 12: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

(not orthogonal but normalized)

or above

Smaller for Bigger shell (1s<2sp<3spd)

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Contracted Gaussian Functions (CGF)

• The product of the gaussian "primitives" is another gaussian. • Integrals are easily calculated. Computational advantage• The price we pay is loss of accuracy. • To compensate for this loss, we combine GTOs. • By adding several GTOs, you get a good approximation of the

STO. • The more GTOs we combine, the more accurate the result.

• STO-nG (n: the number of GTOs combined to approximate the

STO)

Minimal CGF basis set

STO

GTO primitive

Page 14: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Extended Basis Set: Split Valence

* minimal basis sets (STO-3G)A single CGF for each AO up to valence electrons

• Double-Zeta (: STO exponent) Basis Sets (DZ)– Inert core orbitals: with a single CGF (STO-3G, STO-6G, etc)– Valence orbitals: with a double set of CGFs

– Pople’s 3-21G, 6-31G, etc.

• Triple-Zeta Basis Sets (TZ)– Inert core orbitals: with a single CGF– Valence orbitals: with a triple set of CGFs– Pople’s 6-311G, etc.

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Double-Zeta Basis Set: Carbon 2s Example

3 for 1s (core)

21 for 2sp

(valence)

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Basis Set Comparison

Page 17: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Double-Zeta Basis Set: Example

3 for 1s (core)

21 for 2sp (valence)

Not so good agreement

Page 18: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Triple-Zeta Basis Set: Example

6 for 1s (core)

311 for 2sp (valence)

better agreement

Page 19: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Extended Basis Set: Polarization Function

• Functions of higher angular momentum than those occupied in the atom

• p-functions for H-He, d-functions for Li-Caf-functions for transition metal elements

Page 20: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Extended Basis Set: Polarization Function

• The orbitals can distort and adapt better to the molecular environment.

(Example) Double-Zeta Polarization (DZP) or Split-Valence Polarization (SVP) 6-31G(d,p) = 6-31G**, 6-31G(d) = 6-31G* (Pople)

Page 21: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Polarization Functions. Good for Geometries

Page 22: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Extended Basis Set: Diffuse Function• Core electrons and electrons engaged in bonding are tightly bound.

Basis sets usually concentrate on the inner shell electrons. (The tail of wave function is not really a factor in calculations.)

• In anions and in excited states, loosely bond electrons become important. (The tail of wave function is now important.)

We supplement with diffuse functions (which has very small exponents to represent the tail).

• + when added to H ++ when added to others

wave function

Page 23: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Dunning’s Correlation-Consistent Basis Set

• Augmented with functions with even higher angular momentum

• cc-pVDZ (correlation-consistent polarized valence double zeta)• cc-pVTZ (triple zeta)• cc-pVQZ (quadruple zeta)• cc-pV5Z (quintuple zeta) (14s8p4d3f2g1h)/[6s5p4d3f2g1h]

Basis Set Sizes

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Effective Core Potentials (ECP) or Pseudo-potentials

• From about the third row of the periodic table (K-)Large number of electrons slows down the calculation. Extra electrons are mostly core electrons.A minimal representation will be adequate.

• Replace the core electrons with analytic functions (added to the Fock operator) representing the combined nuclear-electronic core to the valence electrons.

• Relativistic effect (the masses of the inner electrons of heavy atoms aresignificantly greater than the electron rest mass) is taken into account byrelativistic ECP.

• Hay and Wadt (ECP and optimized basis set) from Los Alamos (LANL)

Page 25: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.
Page 26: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.
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Page 29: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

ab initio or DFT Quantum Chemistry Software

• Gaussian• Jaguar (http://www.schrodinger.com): Manuals on

website• Turbomole• DGauss• DeMon• GAMESS• ADF (STO basis sets)• DMol (Numerical basis sets)• VASP (periodic, solid state, Plane wave basis sets)• PWSCF (periodic, solid state, Plane wave basis sets)• CASTEP (periodic, solid state, Plane wave basis sets)• SIESTA (periodic, solid state, gaussian basis sets)• CRYSTAL (periodic, solid state, gaussian basis sets)• etc.

Page 30: Lecture 11. Basis Functions & Basis Set Molecular Quantum Mechanics, Atkins & Friedman (4 th ed. 2005), Ch. 9.1-9.6 Essentials of Computational Chemistry.

Solving One-Electron Hartree-Fock Equations

LCAO-MO Approximation Linear Combination of Atomic Orbitals for Molecular Orbital

• Roothaan and Hall (1951) Rev. Mod. Phys. 23, 69 • Makes the one-electron HF equations computationally

accessible• Non-linear Linear problem (The coefficients { } are the

variables)