July 2, 2014 TransPLANT & Elixir-NL · TransPLANT & Elixir-NL Jan-Peter Rob Richard Gabino . 2 of...
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Needs of the Plant Research Community - a Dutch perspective July 2, 2014 TransPLANT & Elixir-NL Jan-Peter Rob Richard Gabino
Transcript of July 2, 2014 TransPLANT & Elixir-NL · TransPLANT & Elixir-NL Jan-Peter Rob Richard Gabino . 2 of...
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Needs of the Plant Research Community - a Dutch perspective
July 2, 2014
TransPLANT & Elixir-NL
Jan-Peter Rob Richard Gabino
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Plant breeding and beyond: basics
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Plant breeding and beyond: genetics
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Plant breeding and beyond: genetics
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Plant breeding and beyond: SELECTION
Selection of ● parents ● genetics ● trait ● algorithm ● population ● environment ● market ● legislation ● consumer and more
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Plant breeding and beyond: example
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Plant breeding: aims
§ Yield, yield, yield ● more with less
§ Yield stability ● different environments
§ Disease resistance and abiotic stress tolerance § Quality § Input and environmental impact
● fresh water ● Agrichemicals
§ (Marketability)
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Precision breeding
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Challenges
§ Polyploid crops § Huge genomes § Repeat content § Recombination § Protein function § QTL regions
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Precision Breeding in TransPLANT2020
§ Rationalization of selection decisions on all levels
§ Interoperability of data as accelerator of innovation ● HTP genotyping, HTP phenotyping ● Ontologies and standards ● Tools and management ● Networks
Rationalization = data interoperability
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Elixir-NL
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Mode of action Elixir-NL
§ Community based § Facilitator & organizer
● cross fertilization ● cross sectoral
(plant, food, animal,
red, white, blue, energy) ● cross collaboration - ESFRI, other - academia - industry
§ Agenda setter
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as to prevent....
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Cells and Organs
Organism
Vision for TransPLANT2020 – Elixir-NL
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Vision for Elixir-NL - Transplant2020
Databases (curated)
Data Sets
(TranSmart)
Pheno Data
TranSmart)
Research Blogs
Any Format
Mul=ple Analy=cs-‐Enabling Environment (any format)
Research Community Confirma=onal reading (full provenance)
Interoperable Exchange Environment (RDF)
New Insights
Publica=on
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Cells and Organs
Organism
Precision breeding in Transplant202
§
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Let’s do it.... Let’s go for TransPLANT 2020
