Introduction to the FAO expert workshop on Practical applications of Whole Genome Sequencing (WGS)...

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Transcript of Introduction to the FAO expert workshop on Practical applications of Whole Genome Sequencing (WGS)...

Page 1: Introduction to the FAO expert workshop on Practical applications of Whole Genome Sequencing (WGS) for food safety management
Page 2: Introduction to the FAO expert workshop on Practical applications of Whole Genome Sequencing (WGS) for food safety management
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FOOD

SECURITY

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sufficient safe nutritious

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PUBLIC

HEALTH

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Whole Exome and Whole Genome Sequencing - OXHPWhole Genome Sequencing (WGS) and Whole Exome Sequencing (WES) are increasingly clinically available due to significant advances in DNA

Whole Exome and Whole Genome Sequencing - OXHPWhole Genome Sequencing (WGS) and Whole Exome Sequencing (WES) are increasingly clinically available due to significant advances in DNA

Whole Exome and Whole Genome Sequencing for Diagnosis 2.04 ... · Standard Whole Exome Sequencing or Whole Genome Sequencing . Standard WES or WGS turn-around time is usually 1 to

Whole Exome and Whole Genome Sequencing for Diagnosis 2.04 ... · Standard Whole Exome Sequencing or Whole Genome Sequencing . Standard WES or WGS turn-around time is usually 1 to

WGS 101: The Rationale, Mechanics, and Impact of WGS for ...old.foodrisk.org/.../2017/04/Brown-WGS-101-IRAC-WGS...WGS 101: The Rationale, Mechanics, and Impact of WGS for Food Safety

WGS 101: The Rationale, Mechanics, and Impact of WGS for ...old.foodrisk.org/.../2017/04/Brown-WGS-101-IRAC-WGS...WGS 101: The Rationale, Mechanics, and Impact of WGS for Food Safety

Listeria Sequencing in Real Time - APHL...whole genome sequencing (WGS) Surveillance and diagnostics by metagenomics 1. Preserve cultures 2. Prepare for the future working on pure

Listeria Sequencing in Real Time - APHL...whole genome sequencing (WGS) Surveillance and diagnostics by metagenomics 1. Preserve cultures 2. Prepare for the future working on pure

Implementing WGS and Culture-free NGS: An Overview of ......Next-generation Sequencing for Drug resistant TB: Webinar Series, February 5, 2019 Implementing WGS and Culture-free NGS:

Implementing WGS and Culture-free NGS: An Overview of ......Next-generation Sequencing for Drug resistant TB: Webinar Series, February 5, 2019 Implementing WGS and Culture-free NGS:

Whole Genome Sequencing (WGS) a Powerful Tool …...Whole Genome Sequencing (WGS)–a Powerful Tool for Traceback Analysis of Foodborne Pathogens 6th Annual American Food Sure Summit

Whole Genome Sequencing (WGS) a Powerful Tool …...Whole Genome Sequencing (WGS)–a Powerful Tool for Traceback Analysis of Foodborne Pathogens 6th Annual American Food Sure Summit

Whole Genome Sequencing (WGS) for surveillance of foodborne infections in Denmark

Whole Genome Sequencing (WGS) for surveillance of foodborne infections in Denmark

STANDARD OPERATING PROCEDURE FOR PULSENET PFGE OF ... · WGS: Whole Genome Sequencing. Responsibilities . 1. Individuals performing PulseNet WGS-related work must submit certification

STANDARD OPERATING PROCEDURE FOR PULSENET PFGE OF ... · WGS: Whole Genome Sequencing. Responsibilities . 1. Individuals performing PulseNet WGS-related work must submit certification

A Deep-Sequencing Workflow for the Fast and Efficient … · P72 Genotype WGS Publication Method Coverage 1 NC_001659.2 BA71V Spain 1995 1967 Vero cells I [32] Sanger sequencing N/A

A Deep-Sequencing Workflow for the Fast and Efficient … · P72 Genotype WGS Publication Method Coverage 1 NC_001659.2 BA71V Spain 1995 1967 Vero cells I [32] Sanger sequencing N/A

Title of SMI goes here · Web viewYersinia pestis 97. Whole Genome Sequencing (WGS) This is also known as “full genome sequencing, complete genome sequencing, or entire genome sequencing”.

Title of SMI goes here · Web viewYersinia pestis 97. Whole Genome Sequencing (WGS) This is also known as “full genome sequencing, complete genome sequencing, or entire genome sequencing”.

Whole genome sequencing analysis identifies …we performed whole genome sequencing (WGS) analysis of biopsy specimens from 20 ESCC patients in a Japanese population. WGS analysis

Whole genome sequencing analysis identifies …we performed whole genome sequencing (WGS) analysis of biopsy specimens from 20 ESCC patients in a Japanese population. WGS analysis

Side Event on Whole Genome Sequencing (WGS) and Food … · 12 September 2016 . Meeting Report . Side Event on Whole Genome Sequencing (WGS) and Food Safety. Joint FAO/WHO/OIE side

Side Event on Whole Genome Sequencing (WGS) and Food … · 12 September 2016 . Meeting Report . Side Event on Whole Genome Sequencing (WGS) and Food Safety. Joint FAO/WHO/OIE side

Whole-Genome Sequencing (WGS)ratan/Sequence Analysis.pdf · Sequence signatures of structural variation • Read pair analysis • Deletions,small novel insertions,inversions, transposons

Whole-Genome Sequencing (WGS)ratan/Sequence Analysis.pdf · Sequence signatures of structural variation • Read pair analysis • Deletions,small novel insertions,inversions, transposons

Whole Genome Sequencing (WGS) for surveillance of foodborne infections in Denmark: Benefits and potential drawbacks

Whole Genome Sequencing (WGS) for surveillance of foodborne infections in Denmark: Benefits and potential drawbacks

Applications of Whole Genome Sequencing (WGS) technology on food safety management: US presentation

Applications of Whole Genome Sequencing (WGS) technology on food safety management: US presentation

iPad (H) - Florida Department of Health · In addition, whole genome sequencing (WGS) technology was enhanced with three BPHL staff becoming certified to perform WGS for the CDC PulseNet

iPad (H) - Florida Department of Health · In addition, whole genome sequencing (WGS) technology was enhanced with three BPHL staff becoming certified to perform WGS for the CDC PulseNet

Applications of Whole Genome Sequencing (WGS) …Draft version 6: 11 April 2016 Technical background Paper Applications of Whole Genome Sequencing (WGS) in food safety management Food

Applications of Whole Genome Sequencing (WGS) …Draft version 6: 11 April 2016 Technical background Paper Applications of Whole Genome Sequencing (WGS) in food safety management Food

Collection and analysis of whole genome sequencing data from … · for the collection and analysis of whole genome sequencing (WGS) data for at least Listeria monocytogenes, Salmonella

Collection and analysis of whole genome sequencing data from … · for the collection and analysis of whole genome sequencing (WGS) data for at least Listeria monocytogenes, Salmonella

Whole Genome Sequencing aka “WGS” - utility in foodborne illness outbreak detection and investigations Dan Rice FDA ORA – Pacific Regional Lab Northwest.

Whole Genome Sequencing aka “WGS” - utility in foodborne illness outbreak detection and investigations Dan Rice FDA ORA – Pacific Regional Lab Northwest.

Molecular Characterization of Foodborne Pathogens …...Comparative genomics: whole genome sequencing (WGS) for . L. monocytogenes . strains with differences in stress responses •

Molecular Characterization of Foodborne Pathogens …...Comparative genomics: whole genome sequencing (WGS) for . L. monocytogenes . strains with differences in stress responses •