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Transcript of Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of...
![Page 1: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/1.jpg)
Introduction to Morpho
RCN Workshop
Samantha RomanelloLong Term Ecological Research
University of New Mexico
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Introduction to Morpho
What it is, What it does, and How it works
![Page 3: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/3.jpg)
Morpho
Is a data management software tool for ecologists.
http://knb.ecoinformatics.org/software/morpho/
![Page 4: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/4.jpg)
http://knb.ecoinformatics.org/
morphoportal.jsp
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Morpho
• is a cross-platform, desktop application that allows the ecologist to create and organize metadata and data and to store that information either locally or on a shared network server.
![Page 6: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/6.jpg)
Morpho• provides a way for ecologists to
share data by defining a common structure to document their data
• uses an XML format to create the common structure.
![Page 7: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/7.jpg)
So basically, Morpho is an xml editor
• But what is xml?
![Page 8: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/8.jpg)
Xml eXtensible Markup Language:
• is a programming language that enables designers to create their own tags to indicate specific information.
• It provides format for structured documents and data via the web
![Page 9: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/9.jpg)
XML
• Like html, xml uses a system of coded tags <xxx>…..</xxx>
• Whereas html defines the look and feel of text, xml defines the content.
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XML vs. Eml
• xml can define any content • Morpho is designed for ecologists • this xml format has been structured
for ecological data and is called EML or Ecological Metadata Language.
![Page 11: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/11.jpg)
Morpho allows you to create & edit metadata
without writing EML codes or remembering the structure of EML and the five classes of Metadata descriptors
![Page 12: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/12.jpg)
5 Classes of Metadata Descriptors
I. Data set descriptors
II. Research origin descriptors
III. Data set status and accessibility
IV. Data structural descriptors
V. Supplemental descriptors
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Additionally Morpho allows you to • Search &
query metadata collections
• View data & data collections
• Edit data • Provide
access control
Through the Metacat server
![Page 14: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/14.jpg)
Metacat
• is a XML database that allows storage, query, and retrieval documents
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Basic Features of Morpho
Importing and documenting data
![Page 16: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/16.jpg)
Basic Features
• 3 wizards• Searching• Tree editor• Locally or
networked
![Page 17: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/17.jpg)
Wizards within Morpho
• Profile Wizard• Data Package Wizard• Data Table Wizard
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Profile Wizard
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Profile Wizard
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Data Package Wizard
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Importing Metadata
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Data Package Screen
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Data Table Wizard
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Searching for data and metadata
Morpho allows several types of queries including: boolean, Subject, taxonomic, spatial
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Search results
Results are displayed from both local and networked searches
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Editing Documentation Metadata
Two ways to edit documentation metadata in morpho
• Pull down documentation menu
• Tree editor
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Editing Metadata through the pull down menu
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Research Project
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Rights and Usage
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Temporal Coverage
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Methods
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Taxonomic Information
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Tree editor
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Work locally or networked
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• What it is• What it does • How it works
You will now have an opportunity to explore some of Morpho’s Basic
Features
So as you now have a basic understanding of Morpho
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Hands on Activity with Morpho
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In this session we will…
1. As a group we will upload one data package using Morpho. We will used a dataset from the Sevilleta field station on NPP.
2. Individually you will locate the data packages you registered at the OBFS site using Morpho and add and edit metadata
3. You can also use Morpho to add a data sets to these packages.
![Page 38: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/38.jpg)
Locate Metadata & Data
Locate the metadata and data on your computer
•1999_npp.csv•metadata.doc
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Log on to Morpho
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Open Morpho
Locate the morpho software on your computer
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Open Morpho
• This is the screen that will open on your computer
• As a new user you will need to create a new profile
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Help in Morpho
Morpho comes with complete instructions located in Morpho Help…
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Help in Morpho
The User Guide, will guide you step by step through all of the functions Morpho provides
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Once you have registered at the KNB site and have established your metacat account you can return to the Morpho window and finish creating your profile in Morpho….
Creating a profile in Morpho
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Creating a profile in Morpho
Enter the Metacat username and the organization name which you registered on the knb.ecoinformatics.org site.
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Creating a profile in Morpho
• Add an identifier prefix
• This identifier will become the prefix of your stored metadata file names for all the data set you enter under this profile.
• This identifier prefix can be anything
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Creating a profile in Morpho
• The last step is to login into the metacat server.
• Enter your Metacat password.
• This is the password you created on the KNB website
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Using Morpho to upload data
• We will begin to use Morph to create a data package using a data and metadata from the sevilleta LTER.
• The software has a wizard package that walks you through step by step to upload data.
![Page 49: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/49.jpg)
Adding a new data package with Package Wizard
• There are 15 steps to upload data.
• Information in red is required.
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Adding a title
Begin by adding the title and an abstract.
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Adding keywords
Click on add to enter keywords
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Adding keywords
• This window will open
• Click add to enter more keywords
• Once all keywords are added press OK
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Adding keywords
You will return to this window
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Adding people & organizationsAdd information about the people and organization responsible for the data
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Adding owners
• Enter information about the data owners
• To add owners click add button
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Adding owners• This window
will open• Either
information previously entered or if connected to Metacat…from a different data package
• Information in red is required
• Click ok to enter
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Adding owners
After you submit that information you will return to this page.
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Adding contact metadata
Add information about whom to contact for questions about use
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Adding contact metadata
• Again, a new window will appear
• Information in red is required
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Adding contact metadata
• Either metadata previously entered or if connected to Metacat…from a different data package
• Click ok to enter metadata
![Page 61: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/61.jpg)
Adding contact metadata
After you submit that Metadata you will return to this page.
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Adding administration metadata
Enter metadata on people who administer the dataset
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Adding administration metadataAgain, chose from the earlier entries, another, data package or enter new information
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Adding administration metadata
After you submit that information you will return to this page.
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Adding research project metadata
Link data to other projects.
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Adding research project metadata
A box to enter project Metadata will open
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Adding research project metadata
Again, chose from the earlier entries, another, data package or enter new information
![Page 68: Introduction to Morpho RCN Workshop Samantha Romanello Long Term Ecological Research University of New Mexico.](https://reader035.fdocuments.us/reader035/viewer/2022062305/5697bf811a28abf838c854bb/html5/thumbnails/68.jpg)
Adding research project metadata
If you select from a different data package a new window will open
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Adding research project metadata
After you submit that information you will return to this page.
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Adding usage rights metadata
Describe the intended usage rights of the data including restrictions
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Adding geographic metadata
Describe the geographic region covered by your data
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Adding geographic metadata
A new window will open to add metadata
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Adding geographic metadata
You will return to this screen after you add information
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Adding temporal metadata
Add Metadata about temporal coverage
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Adding temporal metadata
A new window will open to add Metadata
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Adding temporal metadata
You will return to this screen after you add information
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Adding taxonomic metadata
Enter taxonomic Metadata
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Adding taxonomic metadata
With the citation information
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Adding methods and sampling metadata
Enter metadata on the methods and sampling techniques used
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Adding methods and sampling metadata
A new window will open
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Adding Access metadata
Decide on public access
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Adding access metadata
Special access can be given to particular groups
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Adding a data table
At this point you have completed adding the required metadata. You can either finish and save the metadata, or you can add a new data table. We will add the table.
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Adding a data table
We will import the data table and add the documentation automatically
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Adding a data table
Locate the data set
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Start Text Import Wizard
To add metadata automatically for this data set, start import at row 1 and click column labels.The number of steps is determined by the data set.
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View and check data table
If the asci file was saved with delimiters Morpho will format data table according to delimiters
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Add/edit metadata to each column of data
Define each column
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Entering Data Table
Once you have entered all the column metadata you can click on finish to enter
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Using Morpho to edit metadata
Once data is up loaded to Morpho you can edit data or metadataThis is the window that opens after you press finish in the morpho wizard.
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Either click on documentation in the data package window
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Or click on edit in the Entity/attribute
window
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A new window the Morpho editor will open
• Information with red dots is required
• Multiple editor windows can be opened at each metadata level
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Click on the pull down screen to jump to information
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Saving a data package inMorpho
At this point you can choose to save the data locally.
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• At this point we would like you to work individually to search and locate the data packages you registered at the OBFS site using Morpho and add and edit metadata.
• You can also use Morpho to add a data sets to these packages.
• Please feel free to ask the facilitators for help
• When you have finished working in Morpho we are finished for the day.
• See you tomorrow at 8:30.
Now it’s your turn….