Image-based simulation of the ... - COMSOL...
Transcript of Image-based simulation of the ... - COMSOL...
![Page 1: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/1.jpg)
Image-based simulation of the human thorax for cardio-pulmonary applications
F. K. Hermans and R. M. Heethaar, VU University Medical Center, Netherlands
R. T. Cotton, and A. HarkaraSimpleware Ltd. (UK)
Presented at the COMSOL Conference 2009 Milan
![Page 2: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/2.jpg)
Presentation overviewPresentation overview
Company p y
Software solution
Case Study
Conclusion
![Page 3: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/3.jpg)
Company
![Page 4: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/4.jpg)
SimplewareSimplewareDevelopers of world-leading image processing environment for the conversion of 3D images into numerical models
Image-based meshing software andImage based meshing software and services for your research in:
Biomechanics
Materials
Natural Sciences
Global customer baseGlobal customer base
World-wide reseller network
![Page 5: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/5.jpg)
Simpleware Software
Automatic conversion of 3D images into high quality CAD models
Simpleware Software
and meshes, which can be directly used for:
C t Aid d D i (CAD)Computer Aided Design (CAD)
Rapid Prototyping (RP)
Finite Element Analysis (FEA)
Computational Fluid Dynamics (CFD)
![Page 6: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/6.jpg)
Direct approach - from scan to model
ScanIPScanning Image
processing
+ScanCADCAD import & positioning
COMSOL Volume mesh
ti
+ScanFE
(CAD & FE/CFD)generation
![Page 7: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/7.jpg)
ScanIP softwareImage Processing/Segmentation
![Page 8: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/8.jpg)
+ScanCAD moduleI t d iti i f CAD d tImport and positioning of CAD data
![Page 9: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/9.jpg)
+ScanFE moduleFE/CFD mesh generation
![Page 10: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/10.jpg)
Simpleware - Software Integration
S IP IGES STLCT MRI Micro CT
Simpleware Software Integration
ScanIPimage processing tools
IGES, STLCT, MRI, Micro-CT
Filtering, Smoothing, Segmenting
CAD STL +ScanCAD +ScanFE FE CFDCAD, STL ScanCADintegrating CAD into image
ScanFEvolumetric meshing
FE, CFD
Surface, Volume, Contact Surfaces Implant positioning & integration
Material properties, Boundary Cond.Meshes with and without implant
![Page 11: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/11.jpg)
Case Study
![Page 12: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/12.jpg)
Human thorax for cardio-pulmonary applications
![Page 13: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/13.jpg)
Introduction
For medical diagnostic purposes there is an increasing need for non invasive techniques to measure all kinds offor non invasive techniques to measure all kinds of parameters that can provide insight in the functioning of cells, organs or organ systems
Amount of blood that is ejected by each cardiac contraction (strokeAmount of blood that is ejected by each cardiac contraction (stroke volume)Functioning of the lungs during normal breathing or artificial ventilation.
This study focuses on calculating the currentdistributions for ICG and EIT in models of the human thorax.
Impedance Cardiography ( ICG )Electric Impedance Tomography (EIT)
![Page 14: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/14.jpg)
Methods
Impedance Cardiography (ICG). S ll h l lt ti t i i j t d i t ti tSmall, harmless alternating current is injected into a patient. The current distributes through the thorax, and resulting voltages are measured with additional electrodes on the thorax.If the heart contracts the diameter of the aorta increases. Its electrical impedance changes as well and changes in voltages at the skin occur..
Electric Impedance Tomography (EIT) To measure the filling of the lungs with air, a ring of electrodes is tt h d t th ti t th i kiattached to the patients thoracic skin
Two neighbouring electrodes inject a small alternating current; resulting voltages are measured at all other 13 adjacent electrode pairs. From these measurements one tries to reconstruct the impedance pdistribution in the electrode plane. As lungs, muscles, blood etc. have different impedances the reconstructions provide information about tissue distribution in the cross‐section of the patient.
![Page 15: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/15.jpg)
Method
Create a FE model to determine which part of total electrical current flows Heart, lungs and , gAorta.
In ICG and EIT.Effect of geometry changesEffect of geometry changes due to
• Breathing and cardiac contractioncontraction
• Bone Structure
![Page 16: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/16.jpg)
Method: Simpleware generated Finite Element Modelp g
Import image data from CT or MRIor MRIUse ScanIP to segment the regions of interest
LLungs AortaHeart
ScanFE mesh after smoothing, consisting of 173,986 elements with electrodesSegmented regions form sub-domains within COMSOL
![Page 17: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/17.jpg)
Exported FE Mesh in COMSOL
Current flow through each organ
p
organ
Integrated the total current d i l fdensity over volume of each individual organ
The FEM mesh
The current flowing through each organ is calculated as a percentage of the total
t fl i th h thcurrent flowing through the plane.
Subdomain settings:electrical resistivities
![Page 18: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/18.jpg)
ResultsResults
FEM solution of the four current electrode setup
The streamlines are magnitude controlled:Distance between adjacent streamlines is related to the local current densitydensity.The colour of streamlines is logarithmically related to the local current density
![Page 19: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/19.jpg)
ResultsResults
FEM solution of the two current electrode setup
Electrical current streamlines are quite widely distributed through the thorax
![Page 20: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/20.jpg)
ResultsResults
Percentage of current through lungs, expiratory and inspiratory state, with different lung tissue conductivities,(VUmc MRI dataset)
![Page 21: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/21.jpg)
FE for Electrical Impedance Tomography (EIT)p g p y ( )
![Page 22: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/22.jpg)
Simpleware generated Finite Element Model for EITp g
ScanIP: the 16 electrodes are drawn around the thorax in thedrawn around the thorax in the segmentation process.+ScanFE: generates the volume meshImport the mesh in COMSOL(*.mphtxt)The electrode subdomain is disactivated; only the points from the electrode subdomain remain.These points are used to injectThese points are used to inject electrical currents of 5 mA.
Electrodes on the outer boundary of the
3D FEM geometry3D FEM geometry
![Page 23: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/23.jpg)
ResultsResults
Influence of Breathing and Cardiac Cycle
![Page 24: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/24.jpg)
Results
El t i l t di t ib ti th h th l t f thElectrical current distribution through the lungs as part of the total current as a function of lung tissue conductivity in an FEM modelled EIT experiment
![Page 25: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/25.jpg)
Conclusions
![Page 26: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/26.jpg)
ConclusionConclusion
Developed FEM models deliver interesting insight in the current Distribution throughout the upper thorax.g pp
FE based modelling showed that greater part of electrical current Density is not concentrated in the aorta as stated by commercial ICG device producers but widely distributed throughout the thoraxICG device producers but widely distributed throughout the thorax.
Although 2D experiments showed that influence of ribs did not Alter the current distribution through the organs significantly the g g g yModel would be more realistic when bone structure could be taken Into account to explore 3D situation.
![Page 27: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/27.jpg)
Using image based meshing you can…Using image based meshing you can…
…generate straightforwardly and rapidly accurate modelsfor simulation/analysis allows image processing to movefor simulation/analysis - allows image processing to move beyond descriptive/statistical analysis of data
h b f t t i lt l (h dl…mesh any number of structures simultaneously (handles multi-part junctions) and define contact surfaces between them - interfaces are without gaps or overlaps.
…generate coupled finite element and finite volume meshes for multi-physics applications
…incorporate designs in the image data – predict and compare the performance of different designs
![Page 28: Image-based simulation of the ... - COMSOL Multiphysics®cn.comsol.com/paper/download/45081/Harkara_pres.pdf · Image-based simulation of the human thorax for cardio-pulmonary applications](https://reader033.fdocuments.us/reader033/viewer/2022052721/5f0b579f7e708231d4300adb/html5/thumbnails/28.jpg)
Image-based simulation of the human thorax for cardio-pulmonary applications
F. K. Hermans and R. M. Heethaar, VU University Medical Center, Netherlands
R. T. Cotton, and A. HarkaraSimpleware Ltd. (UK)