Identity in research data publication - meeting with SageCite people march2011

G. A. Thorisson, University of Leicester

Identity Workshop prep-meeting, Helsinki, January 27 2011

Identity in research data publication

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Gudmundur ‘Mummi’ Thorisson<[email protected]>

Brookes lab

Tuesday, 22 March 2011

mailto:[email protected]




Non-unique names are a majorproblem in the scholarly literature

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Are these authors all the same person?G. Thorisson, University of LeicesterG. A. Thorisson, University of LeicesterG. A. Thorisson, Cold Spring Harbor Laboratory





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J. SmithJ. SmithJ. SmithJ. SmithJ. Smith [etc.]

Or these?





2

How about these?



Or these?





2

How about these?



Or these?

∼2/3 of the ∼6 million authors in MEDLINE share a last name and first initial with at least one other author, and an ambiguous name refers to ∼8 persons on average.Torvik and Smalheiser. Author name disambiguation in MEDLINE. ACM Transactions on Knowledge Discovery from Data (2009) vol. 3 (3)



Identity Workshop prep-meeting, Helsinki, January 27 2011 5

Geoffrey BilderDirector of Strategic Initiatives




• Contributor recognition - attribute published works to the person(s) who contributed to them

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Unique identifiers for authors contributors

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automated author disambiguation+

author involvement





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Dec’09: launch of the Open Researcher Contributor Identification Initiative - ORCID

automated author disambiguation+

author involvement




Centrally-managed informatics infrastructure:i) for researchers to manage & use profileii) for tracking author-to-publication attribution linksiii) interaction with other systems (e.g. publishers, digital libraries

ORCID

F67572010

?

ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.

ORCID ID: G-1442-2009J. Smith, Univ. North Pole

ORCID ID: D-2400-2010J. Smith, Luthor Corporation




Manuscript submission to journal

Attribution: ORCID ID for author <--> DOI for article




Why publishers want this

– single sign-on (SSO) for manuscript tracking systems

– Disambiguating contact information for use by editorial offices, royalty payments systems, copyright clearances, etc.

– Automatic updating of email addresses for table of contents (TOC) alerts and other automated email communications

– Automated tools for detecting potential reviewers, including tools for detecting potential conflicts of interest

– Synchronization with publisher web site user profiles and granting researchers customized, privileged access to content based on profiles

– Understanding all of the manifold ways in which an individual “contributes” to a publisher or a field (e.g. As an editor, reviewer, letter writer, conference chair, etc.).

– Etc.

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http://en.wikipedia.org/wiki/Single_sign-on

http://en.wikipedia.org/wiki/Single_sign-on



-Verified publication record-streamlined MS submission-attribution for non-traditional scholarly output-Etc.

Why researchers will want this



G. A. Thorisson, University of Leicester www.gen2phen.org

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http://www.gen2phen.org



G. A. Thorisson, University of Leicester www.gen2phen.org

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>150 Organisations






• Provenance - I trust dataset X generated by a certain J. Smith

• Contributor recognition - publication credit for sharing data

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Research data asscholarly output




• Provenance - I trust dataset X generated by a certain J. Smith

• Contributor recognition - publication credit for sharing data

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• Access management - control access to sensitive research data

Research data asscholarly output



Lab meeting Fri 11 Feb 2010 16

Need to IDENTIFY people as theycontribute to

&

access

Internet resources

• The basic identity problem the Internet poses is establishing one party’s identity to another party’s satisfaction through communication across the network.

Weitzner. In Search of Manageable Identity Systems. IEEE Internet Computing (2006) vol. 10 (6) pp. 84-86


G. A. Thorisson www.gen2phen.org

3rd Human Variome Project Meeting, Paris, 10-14 May, 2010

• Access management– Controlling access to non-public resources on the Web

• Analytical resources - incl. high-performance computing clusters

• Potentially identifiable biomedical data

• Contribution tracking– Data submissions to central repositores

– Data curation / micro-attribution

– Bio-resource impact factor + nanopublications

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Data-related applications for an online digital identity (a.k.a ‘researcher IDs’)




The data sharing problem

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From http://www.nature.com/news/specials/datasharing/




The data sharing problem

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From http://www.nature.com/news/specials/datasharing/

analysedsynthesisedinterpreted

Information

published

Knowledge

Publication

Data




Publishing a journal article




Publishing a dataset

Publishing a journal article




Outcome 3/3

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DOI <-> ORCID ID

• Thorisson, G. (A-883-2010), Bilder, G.W. (C-035-2009) and Fenner, M. (A-101-2010). Icelandic 9th century viking bowl. Psychoceramics Archive. Sep 2 2010.doi:10.4259/psycho.5gtpq-thorisson




Outcome 3/3

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DOI <-> ORCID ID

• A-883-2010 <created> 10.4259/psycho.5gtpq-thorisson

• C-035-2009 <created> 10.4259/psycho.5gtpq-thorisson

• A-101-2010 <created> 10.4259/psycho.5gtpq-thorisson

• Thorisson, G. (A-883-2010), Bilder, G.W. (C-035-2009) and Fenner, M. (A-101-2010). Icelandic 9th century viking bowl. Psychoceramics Archive. Sep 2 2010.doi:10.4259/psycho.5gtpq-thorisson



Lab meeting Fri 11 Feb 2010

Cafe RouGE

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10

1. Diagnostic laboratories

2. Central mutation depot

3. End-users (e.g. LSDB curators)

Publish data

Retrieve RSS feeds

•Digital IDs for security / access management

•Attribution for published data, via digital IDs




• Who contributed to dataset 10.4259/psycho.5gtpq-thorisson?

• All data publications by A-883-2010 ?

• Which papers have cited the works of A-883-2010 ?

• Total no. citations to datasets by A-883-2010 in the last 2 years?

• Total no. downloads of datasets by A-883-2010?

• [....]

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G. Thorisson, Univ. [email protected]

ORCID ID: A-883-2010








A digital identity for researchers centred on

scholarly profile?




ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.

http://mummi.myopenid.com

A digital identity for researchers centred on

scholarly profile?





Lab meeting Fri 11 Feb 2010

Coming autumn 2011, to a venue near you! Int’l workshop on researcher identity

• Co-organized by CSC (Finland IT Centre for Science)

• Provisional title: “Identity in research infrastructure and scientific communication" - IRISC

• Location: Helsinki

• Time: September 12-13

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GEN2PHEN Consortiumhttp://www.gen2phen.org/about-gen2phen/partners

Prof Anthony J. Brookes Bioinformatics Group

This work has received funding from the European Community's Seventh Framework Programme (FP7/2007-2013)under grant agreement number 200754 - the GEN2PHEN project.

Acknowledgements

Contact me! Gudmundur A. Thorisson

<[email protected]>http://friendfeed.com/mummi

http://www.linkedin.com/in/mummi


http://www.gen2phen.org/about-gen2phen/partners

http://www.gen2phen.org/about-gen2phen/partners



http://friendfeed.com/mummi

http://friendfeed.com/mummi



Identity in research data publication - meeting with SageCite people march2011

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