HPC in the Cloud
description
Transcript of HPC in the Cloud
HPC in the CloudGuy Tel-Zur
http://aws.amazon.com/console/
Sign In
EC2 Dashboard
EC2 AMI for scientific computing in Python and R
AMI ID: ami-84bd41ed
Source: http://www.r-bloggers.com/ec2-ami-for-scientific-computing-in-python-and-r/
Launching Instance
Connect using PuTTY
Install VNC serverfrom the following packages: * xtightvncviewer * xvnc4viewer
Add a user
As root:
useradd telzurmkdir /home/telzurchown –R telzur /home/telzursu telzur
Passwordless ssh
ssh-keygen -t dsacd .sshcat ./id_dsa.pub >> authorized_keys2
Use a lightweight window manager such as icewm
Open ports 5800,5900-5901…in the security group for VNC to work
Install a light window managerapt-get install icewm
HPC Cluster
16 cores
EBS /dev/sdh /volchange made in /etc/fstab
Installations
• yum install • gcc• gcc-c++• gcc-gfortran• Lapsck• Python-devel
• Need more repositories:• rpm -Uvh
http://download.fedora.redhat.com/pub/epel/5/x86_64/epel-release-5-4.noarch.rpm
• yum install atlas.x86_64 blas.x86_64 lapack.x86_64• yum groupinstall XFCE (startxfce4)• yum install glibc-devel.i386
Test MPI
1:41 AM PDT We are currently investigating latency and error rates with EBS volumes and connectivity issues reaching EC2 instances in the US-EAST-1 region.2:18 AM PDT We can confirm connectivity errors impacting EC2 instances and increased latencies impacting EBS volumes in multiple availability zones in the US-EAST-1 region. Increased error rates are affecting EBS CreateVolume API calls. We continue to work towards resolution.2:49 AM PDT We are continuing to see connectivity errors impacting EC2 instances, increased latencies impacting EBS volumes in multiple availability zones in the US-EAST-1 region, and increased error rates affecting EBS CreateVolume API calls. We are also experiencing delayed launches for EBS backed EC2 instances in affected availability zones in the US-EAST-1 region. We continue to work towards resolution.3:20 AM PDT Delayed EC2 instance launches and EBS API error rates are recovering. We're continuing to work towards full resolution.4:09 AM PDT EBS volume latency and API errors have recovered in one of the two impacted Availability Zones in US-EAST-1. We are continuing to work to resolve the issues in the second impacted Availability Zone. The errors, which started at 12:55AM PDT, began recovering at 2:55am PDT5:02 AM PDT Latency has recovered for a portion of the impacted EBS volumes. We are continuing to work to resolve the remaining issues with EBS volume latency and error rates in a single Availability Zone.6:09 AM PDT EBS API errors and volume latencies in the affected availability zone remain. We are continuing to work towards resolution.
Quality of Service ????
BBC
Who is affected by EC2?So
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Saving the computer as an AMI
2 X 16cores !
Add graphical WM (xfce4) using remote desktop (VNC) – Open port
Price
$1.60/hour for this xlarge machine
$4,290 for 1 year$6,590 for 3 years
This is the TCO !
vi /etc/ssh/sshd_config
Change: password authentication from no to yes
Rload sshd by /etc/init.d/sshd reload