How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

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How to use GEO Ka-Lok Ng Department of Bioinformat ics Asia University Taiwan

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Transcript of How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

Page 1: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

How to use GEO

Ka-Lok NgDepartment of BioinformaticsAsia UniversityTaiwan

Page 2: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GEO datasets Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo

http://www.ncbi.nlm.nih.gov/
Page 3: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GSE8351

Page 4: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GSE, GPL, GSM

GSM

GPL

Page 5: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GPL5452 – view full table

Page 6: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

67 samples - mainly HCC samples

Page 7: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

Sample GSM206985

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM206985
Page 8: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

G000002 0.065540587 G000003 0.053925988 G000004 0.031904168

Page 9: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

Search GEO datasets for “GSE3536”

Title : Hepatoma cell lines vs. Universal control 3

Page 10: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GSE3536

Page 11: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GPL2913 – view full table

Page 12: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

36 samples

Page 13: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GSM81024 HepG2 vs. Universal control 5

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM81024
Page 14: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

GEO Profiles - http://www.ncbi.nlm.nih.gov/

Step1:選擇 GEO Profiles

Step2:在此鍵入你所想收尋之關鍵字如 :

GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession )

http://www.ncbi.nlm.nih.gov/
http://www.ncbi.nlm.nih.gov/
http://www.ncbi.nlm.nih.gov/
Page 15: How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan.

Search result

可點進去看 tissue分佈

查詢後，有些得出許多結果，依user 所要的資料去選擇，用基因所對應的 NM編號來選。


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Sequences Alignment Statistics Ka-Lok Ng Asia University.

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Bayes’ Theorem, Bayesian Networks and Hidden Markov Model Ka-Lok Ng Asia University.

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310KM Lab 4 Part 3 Tutorial Group:2 Student Name:Chan Nga Lok Fan Ka Yan Lo Yuen Ki Tsui Sui Wa.

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DNA computing Solving Optimization problems on a DNA computer Ka-Lok Ng Dept. of Bioinformatics Taichung Healthcare and Management University.

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Klip-lok roof solar mounting systeminstallation manual · 2021. 2. 11. · Klip-lok roof solar mounting systeminstallation manual For LYSAGHT KLIP-LOK 406 KLIP-LOK CLASSIC 700 KLIP-LOK

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MEMBERS REFERENCE SERVICE LARRDIS LOK SABHA …164.100.47.193/Refinput/New_Reference_Notes/... · UDAN---- Ude Desh Ka Aam Naagrik' on 21 October 2016 with the twin objectives of1:

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Doraemon Leader : Lam Pak Yin (32) Presenter1 : Lai Lok Hang (30) Presenter2 : Lu Tsz Fung (38) Editor : Chow Tsz Chun (27) IT operator :Chow Ka Long.

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Hedge Fund. Member list Lam, Ho-kei Jan023011 Ng, Lok-hang Jessica033125 Chan, Ka-po Kate033139 Lee, Tak-ming Alvin033228 Wong, Wing-yin Winnie034025.

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urban.rajasthan.gov.inurban.rajasthan.gov.in/content/dam/raj/udh/ulbs/jodhpur division... · 236) 21, 2011 Lok Sevaon Ke Pradan Ki Guarantte Adhiniyam. 2011 (201 1 Ka Adhiniyam Sankhyank

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Genome Science Ka-Lok Ng Dept. of Bioinformatics Asia University.

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1. The meeting was resumed at 9:05 a.m. on 25.11.2013. The ...R15 – Mr Chan Ka Lok 9. Mr Chan Ka Lok made the following main points: (a) as a Legislative Council (LegCo) Member,

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LOK SATTA MOVEMENT People Power LOK SATTA MOVEMENTS’ .

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EXTRAORDINARY Hkkx III—[k.M 4 PART III—Section 4 izkf/dkj ls … · 2019. 5. 10. · vf/kdkfj;ka vkSj deZpkfj;ka dk oxhZdj.k] fu;qfDr] ifjoh{kk vkSj lok dh lekfIr 3- vf/kdkfj;ka

EXTRAORDINARY Hkkx III—[k.M 4 PART III—Section 4 izkf/dkj ls … · 2019. 5. 10. · vf/kdkfj;ka vkSj deZpkfj;ka dk oxhZdj.k] fu;qfDr] ifjoh{kk vkSj lok dh lekfIr 3- vf/kdkfj;ka

Introduction to Quantum mechanics and Molecular Spectra Ka-Lok Ng Asia University.

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Hong Kong Squash Junior Squash Award Scheme Award ......Kong Ka Wai Kuan Russell Kwan Hei Ching Kwan Wai Hon Kwan Wan Hei Kwok Chun Lok Kwok Chung Yu Jeason Kwok Ka Ho Kwok Lai Yin

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