How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia...
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![Page 1: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/1.jpg)
How do proteins alter existing functions to form new ones?
Cameron BrownUniversity of Georgia
Mentor: Doug AndersonPrehoda LabSPUR 2011
X
Y
Z
Anderson, 2010
![Page 2: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/2.jpg)
Guanylate Kinase is a Model for Protein Evolution
Nucleotide kinase(GK enzyme) Protein-protein binding(GK domain)
+ GMP + ATP k cat+ GDP + ADP
GK enzyme
GK domain
How did this occur in evolution?
Anderson, 2010
evolution
![Page 3: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/3.jpg)
GK Evolution Mechanism may be Applicable to other Metazoan Systems
GK domain
+ GMP + ATP
GK enzyme Enzyme
Protein binder
Acetylcholinesterase (AChE)
Neuroligins
![Page 4: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/4.jpg)
Guanylate Kinase is a metabolic enzyme that phosphorylates GMP using ATP
Apo Gkenz
(pdb:1EX6)
GMP bound Gkenz
(pdb:1GKY)
+ GMP + ATP
GMP binding domain
Anderson, 2010
![Page 5: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/5.jpg)
GK domains bind phosphoproteins without undergoing allosteric change
Apo GKdom
(pdb: 1JX0)
Pins bound GKdom
+ Phospho-Pins
Johnston, 2010
![Page 6: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/6.jpg)
GK Domains diverged ~600 MYA from GK Enzymes
GK enz Vert. Dlg-1,4 Fly GKZo-likeMPP-like
GK Domains
Ancient GK enz
time
![Page 7: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/7.jpg)
Ancestral Reconstruction allows us to go back in time…
GK enz Vert. Dlg-1,4 Fly GKZo-likeMPP-like
AncGK1
AncGK2
AncGK3
GK Domains
Ancestral Reconstruction
Ancient GK enz
time
AncGK0
![Page 8: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/8.jpg)
…to uncover the path from ancient GK enzymes
to modern day GK domains
GK enz Vert. Dlg-1,4 Fly GKZo-likeMPP-like
AncGK1
AncGK2
AncGK3
GK Domains
Ancestral Reconstruction
Ancient GK enz
time
AncGK0
![Page 9: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/9.jpg)
Question: Is AncGK1 an Enzyme, protein binder, or neither?
GK enz Vert. Dlg-1,4 Fly GKZo-likeMPP-like
GK Domains
Ancient GK enz
time
[SVSHTTR]
[CVPHTTR]
[SVSHTTR]AncGK1
AncGK0
AncGK2
AncGK3
Hypothesis: AncGK1 is an Enzyme
![Page 10: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/10.jpg)
Analyzing Guanylate Kinase Catalytic Activity using Michaelis-Menten Kinetics
ATP + GMP ADP + GDPGK
ADP + GDP + 2PEP ATP + GTP + 2 pyruvatePK
2 Pyruvate + 2 NADH + 2H+ 2 Lactate + 2 NAD+LDH
Agarwal, 1978
![Page 11: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/11.jpg)
Analyzing Guanylate Kinase Catalytic Activity using Michaelis-Menten Kinetics
ATP + GMP ADP + GDPGK
ADP + GDP + 2PEP ATP + GTP + 2 pyruvatePK
2 Pyruvate + 2 NADH + 2H+ 2 Lactate + 2 NAD+LDH
Agarwal, 1978
![Page 12: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/12.jpg)
Analyzing Guanylate Kinase Catalytic Activity using Michaelis-Menten Kinetics
ATP + GMP ADP + GDPGK
ADP + GDP + 2PEP ATP + GTP + 2 pyruvatePK
2 Pyruvate + 2 NADH + 2H+ 2 Lactate + 2 NAD+LDH
Agarwal, 1978
![Page 13: How do proteins alter existing functions to form new ones? Cameron Brown University of Georgia Mentor: Doug Anderson Prehoda Lab SPUR 2011 X Y Z Anderson,](https://reader030.fdocuments.us/reader030/viewer/2022032803/56649e355503460f94b23a62/html5/thumbnails/13.jpg)
Analyzing Guanylate Kinase Catalytic Activity using Michaelis-Menten
Kinetics
YGuk1WT:Vmax = 0.2086Km = 354.6 μM
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AncGK1 is not a catalytically active GK enzyme
YGuk1WT:Vmax = 0.2086Km = 354.6 μM
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Enzymatic activity was lost sometime after GK domains
diverged
GK enz Vert. Dlg-1-4 Fly GKZo-likeMPP-like
GK Domains
Ancient GK enz
time
AncGK1
AncGK0
Enzyme activity?
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Future Directions
GK enz Vert. GK-1-4 Fly GKZo-likeMPP-like
AncGK1
AncGK2
AncGK3
GK Domains
Ancestral Reconstruction
Ancient GK enz
GKdom
time
AncGK0
AncGK0AncGK1Continue running towards GKdom
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Acknowledgements • Prehoda Lab
– Ken– Doug– Chris– Matt– Marisa– Ryan– Oggie– Chiharu– Michelle– Jon– Brett– Amanda– Evan– Page
• SPUR– Peter– Lyndsey, Toby, and Blakely– The Interns