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Published Ahead of Print 4 January 2013. 10.1128/AEM.03681-12.
2013, 79(6):1803. DOI:Appl. Environ. Microbiol. Katrin Kellner, Robert M. Plowes and Ulrich G. MuellerQuinn S. McFrederick, Jamie J. Cannone, Robin R. Gutell, Rather than the RuleHymenopteran Hosts Is the Exception Specificity between Lactobacilli and
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Specificity between Lactobacilli and Hymenopteran Hosts Is theException Rather than the Rule
Quinn S. McFrederick,a Jamie J. Cannone,b Robin R. Gutell,b Katrin Kellner,a Robert M. Plowes,c Ulrich G. Muellera
Section of Integrative Biology, University of Texas at Austin, Austin, Texas, USAa; The Institute for Cellular and Molecular Biology and the Center for Computational Biologyand Bioinformatics, The University of Texas at Austin, Austin, Texas, USAb; Brackenridge Field Laboratory, University of Texas at Austin, Austin, Texas, USAc
Lactobacilli (Lactobacillales: Lactobacillaceae) are well known for their roles in food fermentation, as probiotics, and in humanhealth, but they can also be dominant members of the microbiota of some species of Hymenoptera (ants, bees, and wasps).Honey bees and bumble bees associate with host-specific lactobacilli, and some evidence suggests that these lactobacilli are im-portant for bee health. Social transmission helps maintain associations between these bees and their respective microbiota. Todetermine whether lactobacilli associated with social hymenopteran hosts are generally host specific, we gathered publicly avail-able Lactobacillus 16S rRNA gene sequences, along with Lactobacillus sequences from 454 pyrosequencing surveys of six otherhymenopteran species (three sweat bees and three ants). We determined the comparative secondary structural models of 16SrRNA, which allowed us to accurately align the entire 16S rRNA gene, including fast-evolving regions. BLAST searches and maxi-mum-likelihood phylogenetic reconstructions confirmed that honey and bumble bees have host-specific Lactobacillus associates.Regardless of colony size or within-colony oral sharing of food (trophallaxis), sweat bees and ants associate with lactobacilli thatare closely related to those found in vertebrate hosts or in diverse environments. Why honey and bumble bees associate withhost-specific lactobacilli while other social Hymenoptera do not remains an open question. Lactobacilli are known to inhibit thegrowth of other microbes and can be beneficial whether they are coevolved with their host or are recruited by the host from envi-ronmental sources through mechanisms of partner choice.
Lactobacillus is the largest genus of lactic acid bacteria (LAB),containing species that are well known for their roles in food
production and human health (1). Lactobacilli convert sugars tolactic acid and other acids, and some species are used in foodfermentations to preserve foods, contribute flavor, or inhibit thegrowth of other bacteria (2). Other lactobacilli are used as humanprobiotics; for example, L. reuteri protects children from rotavirusgastroenteritis (3). Lactobacillus is of obvious importance to hu-mans for both economic and health reasons.
Lactobacilli also associate with diverse nonhuman animals,and there is evidence that some lactobacilli can protect these hostsfrom pathogens (4, 5). For example, Lactobacillus reuteri is foundin the gastrointestinal tracts of pigs, rodents, chickens, and hu-mans and aids in protection of the host from pathogens (6). Lac-tobacillus plantarum is one of the five dominant bacterial phylo-types found in Drosophila melanogaster intestinal tracts (7),promoting larval growth in low-nutrient medium (8). A mixtureof LAB, including Lactobacillus species, help protect honey beelarvae from Paenibacillus larva and Melissococcus plutonius, thecausative agents of American and European foulbrood, respec-tively (9, 10). The Lactobacillus phylotypes Firm4 and Firm5, inconjunction with other members of the bumble bee microbiota,protect bumble bee workers from the trypanosome pathogenCrithidia bombi (11, 12). LAB have also been hypothesized to playa role in fermenting pollen stored by honey bees, thereby protect-ing the stored bee bread from spoilage (13), although firm evi-dence for this hypothesis is still lacking.
Several authors suggested recently that the relationships be-tween honey and bumble bees (corbiculate apids) and their mi-crobiotae, both of which include related Lactobacillus phylotypes,have been shaped by coevolutionary processes (10, 14, 15). Ourrecent phylogeny (16), based on a short fragment of the 16S rRNAgene, agreed with suggestions that the Firm3, Firm4, and Firm5
honey bee- and bumble bee-associated Lactobacillus phylotypesare host specific, which suggests that between-species transmis-sion of these phylotypes is uncommon or absent (16). Horizontaltransmission has not been excluded, but both honey and bumblebees can acquire microbes through within-colony social contact(11, 17). In contrast, solitary and primitively eusocial sweat beesassociate with lactobacilli related to those that occur on flowers(16). It is currently unknown whether sociality per se or someunique aspect of corbiculate apid biology maintains the relation-ship between honey and bumble bees and their host-specific lac-tobacilli.
Here we explore the host specificity of lactobacilli that associatewith hymenopteran hosts that exhibit a range of social structures.First, we used very accurate comparative secondary structuremodels as templates to create a larger set of 16S rRNA structuremodels that represent all of the major forms of structural diversitypresent in the primary groups of lactobacilli. Second, we usedthese structure models to construct a comprehensive and highlyaccurate alignment of full-length or nearly full-length 16S rRNAgene sequences. To determine whether host specificity is commonin associates of insects that live in large societies or is limited toassociates of corbiculate apids, we constructed two additionalalignments that included 16S-amplicon 454-pyrosequencing sur-
Received 28 November 2012 Accepted 2 January 2013
Published ahead of print 4 January 2013
Address correspondence to Quinn S. McFrederick, [email protected].
Supplemental material for this article may be found at http://dx.doi.org/10.1128/AEM.03681-12.
Copyright © 2013, American Society for Microbiology. All Rights Reserved.
doi:10.1128/AEM.03681-12
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veys of several bee and ant species. We then used these structure-based alignments to reconstruct the phylogenetic history of thegenus Lactobacillus.
MATERIALS AND METHODSFull and nearly full-length Lactobacillus 16S rRNA gene sequences. Toobtain a comprehensive representation of this diverse genus, we down-loaded publicly available, full-length or nearly full-length sequences of the16S rRNA gene. First, we searched NCBI’s nucleotide database (18) forcomplete Lactobacillus 16S rRNA gene sequences. Next, we searched theRibosomal Database Project (RDP [19]) for Lactobacillus 16S sequenceslonger than 1,200 bases and of good quality, as designated by RDP. Toinclude sequences from bee-associated lactobacilli, we downloaded asso-ciated sequences from NCBI PubMed entries of bee-bacterial studies andadditionally searched NCBI’s nucleotide database for bee-associated lac-tobacilli. To avoid redundant sequences and obtain a more tractable rep-resentation of the genus, we clustered sequences of �97% sequence sim-ilarity with the program CD-HIT (20). Since this clustering may haveeliminated some sequences from type strains that were represented bylonger sequences that shared �97% sequence identity with the type strainsequence, we obtained the accession numbers of Lactobacillus type speci-mens from RDP. We then searched our file for the accession numbers ofthese type sequences and added missing sequences back into the align-ment. We additionally searched NCBI taxonomy for Lactobacillus speciesand added reference sequences (21), when available, for the species thatwere missing in our alignment. Finally, we searched the list of prokaryoticnames with standing in nomenclature (22) to verify that our alignmentdid indeed contain representatives from all described lactobacilli. This setof 16S rRNA sequences included identified, cultured, unidentified, anduncultured Lactobacillus species. As outgroups, we added sequences from14 bacterial species from across the Bacilli but with emphasis on the Lac-tobacillales. To investigate diversity of paralogous gene copies within agenome, we included all 16S rRNA gene copies from whole-genome se-quence of five ingroup species and one outgroup species. Our final align-ment contained 19 outgroup sequences (from 14 species), 158 sequencesfrom undescribed or unidentified Lactobacillus species, and 224 sequencesfrom 160 named, but not necessarily published, Lactobacillus species for atotal of 401 sequences.
Partial and complete 16S rRNA gene sequences, including hyme-nopteran associates. To integrate 454 pyrosequencing data into the align-ment of complete or nearly complete full-length sequences, we built asecond alignment spanning the length of the 16S rRNA gene. We codedthe five prime and three prime ends of the 454 sequences as missing data.The effect of missing data on phylogenetic reconstructions is an ongoingresearch area with no simple consensus (23, 24). We therefore planned tointerpret the results of the partial and complete 16S alignment with miss-ing data with caution.
We started with the 401 sequences described above and added se-quences from three separate 16S rRNA-amplicon 454-pyrosequencingstudies of bacteria associated with Hymenoptera: the sweat bees (Halicti-dae) Augochlora pura, Halictus ligatus, and Megalopta genalis (16); an at-tine fungus-growing ant, Mycocepurus smithii (K. Kellner et al., unpub-lished); and the fire-ants, Solenopsis invicta and Solenopsis geminata (25;R. M. Plowes et al., unpublished). We previously published the halictiddata (16), which we obtained from one wild nest of A. pura (Virginia), onelaboratory nest of H. ligatus (Virginia), and two wild nests of M. genalis(Barro Colorado Island, Panama). We also sampled one colony of M.smithii in the wild in Gamboa, Panama, and then brought the nest into thelaboratory and sampled it again 6 months later. We collected S. invicta andS. geminata-complex samples in their native range in Argentina and intheir invasive range in Taiwan, Texas, Florida, and California (Plowes etal., unpublished). These data represent subsets of data sets from previousor forthcoming publications (see, for example, references 16 and 25). Thethree studies used the same 16S rRNA primers: Gray28F 5=-GAGTTTGATCNTGGCTCAG and Gray519r 5=-GTNTTACNGCGGCKGCTG,
which span V1-V3 in the secondary structure of 16S rRNA. V1-V3 arevariable regions that have been shown to accurately differentiate closelyrelated lactobacilli (26). Research and Testing Laboratories (Lubbock,TX) generated the 454 sequence for the three studies at different times.The sweat bee- and Mycocepurus-associated reads were 454 sequencedforward from Gray28f, while the Solenopsis-associated sequences were 454sequenced reverse from Gray519r (these later sequences were reversecomplemented for our analysis).
We used previously described pipelines to denoise and otherwise qual-ity check the 454 16S rRNA reads (16, 25). The sweat bee-associated Lac-tobacillus sequences were depleted of low-quality sequences and chimeras,denoised, and assigned to phylotype as described in McFrederick et al.(16). The Mycocepurus- and Solenopsis-associated bacterial sequenceswere processed in the program mothur (27). First, we denoised the datawith the shhh.flows command. We then removed any sequences withmismatches in the primer binding site or the barcode, or homopolymerruns of over eight bases, and removed primers and barcodes from thesequences. To remove chimeric sequences, we used the chimera.uchimecommand, and deleted the detected chimeras. Next, we ran BLASTsearches against a 16S rRNA database curated by the Medical BiofilmResearch Institute (MBRI; Lubbock, TX). We selected sequences with topBLAST hits against the MBRI database of at least 90% sequence identity toLactobacillus sequences. We chose a minimum of 90% sequence identityin order to include novel Lactobacillus sequences, while keeping in mindthat any sequences that do not belong in the genus Lactobacillus should falloutside of our ingroup in our phylogenetic analysis. As a validation of ourBLAST searches, we ran additional BLAST searches of the 454 sequencesagainst the entire nucleotide collection at NCBI. Next, to maximize thephylogenetic signal of the short 454 reads, we removed 454 sequences thatwere �350 bases long. We then clustered sequences of 97% or greatersequence identity with the program CD-HIT (20). After quality controland clustering, we added 84 sweat bee-associated, 79 Mycocepurus-asso-ciated, and 56 Solenopsis-associated sequences to our alignment, for a totalof 620 sequences in the entire alignment.
The hymenopteran hosts included here vary widely in both geographyand natural history. Augochlora pura and H. ligatus both live in NorthAmerica, but A. pura is a solitary bee that nests in rotten logs (28), whereasH. ligatus is a primitively eusocial halictid that forms small colonies in thesoil (29). Megalopta genalis is a socially polymorphic, neotropical sweatbee that builds nests in decaying branches found in the forest understory(30, 31). Mycocepurus smithii is a neotropical non-leaf-cutting fungus-growing ant that forms colonies with an average of 77 workers in repro-ductive nests in Puerto Rico (32) but can also form much larger singlecolonies that occupy more than one nest in the Brazilian Amazon (33, 34).In contrast, S. invicta is originally from South America but has becomewidespread in its invasive range and can reach colony sizes of 220,000individuals (35, 36). Solenopsis geminata variants have been introduced tomany locations, including Taiwan and possibly Florida (H. Axen, unpub-lished data).
Partial 16S rRNA gene sequences, including hymenopteran associ-ates. To investigate the phylogenetic utility of the short 454-pyrosequenc-ing data, we created a third alignment spanning positions 30 to 517 in theE. coli 16S rRNA gene sequence. We used the entire length of the 454 dataand trimmed the 401 full-length sequences to span only the regions over-lapping the 454 pyrosequencing reads. By creating three separate align-ments, we were able to compare results and determine differences in thephylogenetic reconstructions based on partial versus full length versus acombination of partial and complete 16S rRNA sequences.
Sequence alignment and RNA secondary structure. We used covari-ation analysis to identify RNA secondary structure that is common to a setof sequences that are known to have the same function and higher-orderstructure (37). Covariation analyses identify all types of canonical andnoncanonical base pairs with a set of nucleotides that covary with oneanother, regardless of their proximity to other structural elements (38,39). Approximately 97% of the base pairs, including all of the noncanoni-
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cal base pairs, pseudoknots, and other irregular structural elements in thecomparative 16S rRNA secondary structure models are in the crystalstructure of the ribosomal subunit (40). The strength of the covariationfor each predicted base pair has been quantified and used as a confidencerating for each base pair (http://www.rna.ccbb.utexas.edu/SAE/2A/nt_Frequency/BP/). Given this very high accuracy, as gauged with high-resolution crystal structures, we are most confident that all or nearly all ofthe base pairs in the comparative structure models for the rRNAs fromdifferent organisms are correct, including all of the 16S rRNA secondarystructure models for the genus Lactobacillus (for a complete discussion ofcovariation analysis, see File S1 in the supplemental material).
The accuracy of our predicted secondary structure models are directlyassociated with the quality of the sequence alignment. Better alignmentsfacilitate better comparative structure models. Moreover, vice versa, veryaccurate comparative structure models are the basis for the juxtapositionof nucleotides that are components of similar and analogous structuralelements, especially in highly variable regions that can have large variancesin the number of nucleotides with little or no sequence identity. Thus, oursecondary structure-based alignments do not attempt to maximize se-quence identity a priori. Instead, they attempt to maximize the alignmentof similar structural elements.
After the 16S rRNA sequences were semiautomatically aligned withthe template-based alignment program CRWAlign (41), we refined thealignment manually with the alignment editor AE2 (developed by T.Macke, Scripps Research Institute, San Diego, CA [42]). This tool wasdeveloped for Sun Microsystems (Santa Clara, CA) workstations runningthe Solaris operating system. The manual alignment process utilizes theCRWAlign program to identify nucleotides in a column that might notmap to the same locations in the secondary and tertiary structure. A visualinspection of the alignment determines if these flagged nucleotides shouldbe realigned. If necessary, this is done manually with the AE2 alignmenteditor. For regions of the alignment with high sequence similarity andminimal variance in the number of nucleotides, the information in theprimary structure is sufficient to align sequences with confidence. In con-trast, for more variable regions in closely related sequences or betweenmore distantly related sequences, a high-quality alignment can only beproduced when secondary and/or tertiary structure information is in-cluded.
Secondary structure diagrams. Secondary structure diagrams weregenerated after the first secondary structure model was derived with com-parative methods. Although the Comparative RNA Web (CRW) site(http://www.rna.ccbb.utexas.edu/) contains more than 200 16S rRNAsecondary structure diagrams that sample the diversity within the Bacte-ria, we generated 47 secondary structure diagrams for the present study:38 from taxa representing all of the major phylogenetic groups of Lacto-bacillus and nine from related organisms. We generated the secondarystructure diagrams with the interactive secondary structure programXRNA (written in the C programming language for Sun Microsystemsworkstations running the Solaris operating system by B. Weiser and H.Noller, University of California, Santa Cruz, CA). All structure diagramsare available as online supplemental files at http://www.rna.ccbb.utexas.edu/.
Phylogenetic analyses. To reconstruct the phylogenetic history of thelactobacilli, we conducted separate maximum-likelihood analyses on ourthree alignments. We first determined that GTR�I�� was the most ap-propriate model of sequence evolution for each of our alignments usingthe Akaike Information Criterion (AIC) in Modeltest 3.7 (43) and PAUP*4b10 (44). We then ran 20 independent search replicates on each align-ment in the program GARLI 2.0 (45), with the genthreshfortopoterm,stopgen, and stoptime settings set to 10,000,000. We allowed the programto estimate all parameter values during the runs. To assess branch supportwe conducted 100 bootstrap pseudoreplicates on each alignment, using agenthreshfortopoterm setting of 5,000,000. We used Mesquite (46), tocalculate patristic distances across the entire tree. To calculate divergence,we used the branch info tool in Mesquite (46) to measure the distance
from the base of monophyletic groups of hymenopteran associates to themost recent common ancestor with their closest relatives.
Data availability. We deposited the 84 sweat bee-associated, 79 My-cocepurus-associated, and 56 Solenopsis-associated sequences in the ge-netic sequence database at the National Center for Biotechnical Informa-tion (NCBI GenBank accession numbers KC354148 to KC354367).
RESULTS
Phylogenetic reconstructions of our three 16S rRNA gene sequencealignments resulted in similar clade structure for all trees (Fig. 1 and 2;see also Fig. S1 and see Table S1 in the supplemental material forsimple sequence statistics for all alignments). The phylogeny basedonly on full-length 16S rRNA sequences (Fig. 1) was in nearly com-plete agreement with the phylogeny based on a combination of partialand complete 16S rRNA sequences (Fig. 2). The phylogeny based ononly partial 16S sequences (see Fig. S1 in the supplemental material),however, differed in the branching patterns between and withinclades compared to the full-length phylogeny, but the terminal cladecomposition remained stable. Sequence alignments and detailedphylogenetic trees are available at TreeBase (http://purl.org/phylo/treebase/phylows/study/TB2:S13670), and a detailed version ofFig. 2 with bootstrap support values and taxon labels is available in theonline supplemental files (see Fig. S2 in the supplemental material).
16S rRNA secondary structural models. We created second-ary structural models from 16S rRNA gene sequences of 38 lacto-bacilli and nine other Firmicutes (see File S1 in the supplementalmaterial). In addition, the extent of primary and secondary struc-ture conservation for 608 16S rRNA sequences representing theentire lactobacilli genus was mapped onto a L. acidophilus second-ary structure diagram (Fig. 3). The first hairpin stem and loopfrom the five prime end of the molecule (the V1 region) was themost variable region in Lactobacillus 16S structure. Our structuralmodels suggest that next generation sequencing surveys of bacte-rial communities aimed at elucidating the diversity of Lactobacil-lus should use primers targeting the V1 region.
Full-length 16S rRNA gene phylogeny. Our maximum-likeli-hood analysis of full- or nearly full-length 16S rRNA gene se-quences recovers six major monophyletic clades, which we iden-tify in accordance with previous studies: L. salivarius, L. delbrueckii(acidophilus), L. casei, L. buchneri, L. plantarum, and L. reuteri(Fig. 1) (47–50). The maximum-likelihood bootstrap support val-ues for these clades varied greatly: the L. salivarius and L. reutericlades showed moderate support (82 and 85%, respectively),while other clades showed weak support at their deepest nodes.The deeper branches connecting these major clades uniformlyshowed little support. The clade containing the greatest number oftaxa and the greatest sequence diversity was the L. delbrueckii(acidophilus) clade, which was comprised of 160 taxa and covereda maximum patristic distance of 1.21, out of a global maximum of1.51 across the entire tree (Table 1).
Partial and complete 16S rRNA gene phylogeny, includinghymenopteran associates. The phylogenetic trees determinedfrom the analysis of the partial and complete 16S rRNA alignmentand the full-length 16S rRNA alignment were very similar (Fig. 1and 2). The main difference between the two phylogenies was theplacement of the reuteri clade. The reuteri clade was sister to theplantarum clade in the full-length phylogeny (Fig. 1), whereas inthe partial and complete phylogeny the members of the reutericlade were reconstructed paraphyletic as a series of branching lin-eages leading to the monophyletic L. delbrueckii (acidophilus)
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clade (Fig. 2). Clade memberships and within-clade branchingpatterns were very similar between the full-length and the partialand complete phylogenies, as were the bootstrap support values(Fig. 1 and 2).
Of the Hymenoptera-associated sequences, only the honey andbumble bee-associated Firm3 and Firm4 (F3 and F4 sensu [51])clades were host specific and highly diverged from other lactoba-cilli (Fig. 4). Firm5 also formed a monophyletic group, but was notas diverged from other lactobacilli as Firm3 and Firm4 (Fig. 2 and4). In addition, two sequences from Solenopsis clustered within theFirm5 clade. In contrast to the Firm3-Firm5 clades, most Hy-menoptera-associated sequences were scattered throughout thegenus and either clustered with or were closely related to lactoba-cilli known from vertebrate hosts or from diverse environmental
sources (Fig. 2; see also Fig. S2 in the supplemental material). Mostreads from the pyrosequencing surveys, however, tended to clus-ter into several operational taxonomic units (OTUs) per host(Table 2). The most abundant Lactobacillus OTUs associated withSolenopsis, for example, were closely related to L. sakei and L. plan-tarum, both of which are used in food fermentation (2). The mostabundant M. smithii-associated OTUs were closely related to sev-eral lactobacilli that are common inhabitants of the intestinaltracts of rodents, birds, and humans (Table 2). These M. smithii-associated OTUs were found in both fungus-garden and workersamples (see Table S2 in the supplemental material). As alreadyreported in McFrederick et al. (16), halictids associated mainlywith Lactobacillus OTUs that were related to flower-inhabiting,fructophilic lactobacilli (52) or to a clade that includes
FIG 1 16S rRNA gene maximum-likelihood phylogeny of the genus Lactobacillus, based on full or nearly full-length sequences only. Branch widths areproportional to bootstrap support from 100 pseudoreplicates. Highlighted branches represent Lactobacillus associates of honey or bumble bees. Major clades areindicated with curved lines and named according to previous studies (47–50).
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flower-inhabiting and fructophilic lactobacilli (53) and lactoba-cilli used in sourdough fermentation (54). Some of the halictid-associated OTUs formed monophyletic clades, but these cladesdid not exhibit the same level of divergence as the Firm3 andFirm4 clades (Fig. 2 and 4). Many of the terminal branches thatincluded Hymenoptera-associated sequences exhibited highbootstrap support (see Fig. S2 in the supplemental material).
Partial 16S rRNA gene phylogeny, including Hymenopteraassociates. The deeper branching patterns in the partial 16S phy-logeny did not agree with the full-length phylogeny. For example,
the partial 16S rRNA analysis recovered the L. salivarius clade as aparaphyletic series of branching lineages leading to the monophy-letic L. delbrueckii (acidophilus) clade (see Fig. S1 in the supple-mental material). The L. plantarum and L. buchneri clades werealso no longer monophyletic in the partial phylogeny but insteadwere both broken into two separate clades. The L. reuteri and L.casei clades remained monophyletic in the partial 16S analysis.Although the partial 16S analysis was unable to resolve deeperbranches in the Lactobacillus phylogeny, the membership of theterminal clades was stable across all analyses, and many of the
FIG 2 16S rRNA gene maximum-likelihood tree of the genus Lactobacillus, based on partial and complete sequences combined. Branch widths are proportionalto bootstrap support from 100 pseudoreplicates. Highlighted branches represent Hymenoptera associated lactobacilli as indicated in the figure legend. Cladescontaining lactobacilli associated with humans are indicated by a human figure, whereas clades containing lactobacilli used in food fermentation are indicatedby a piece of cheese. Major clades are indicated with curved lines and named according to previous studies (47–50).
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FIG 3 Secondary structure of the 16S rRNA molecule in the genus Lactobacillus. The degree of conservation in the molecule as determined by analysis of608 sequences is superimposed on the structure of the Lactobacillus acidophilus 16S molecule. Conservation of each nucleotide across the 608 analyzedLactobacillus species is indicated as follows: uppercase letters (�98% conservation), lowercase letters (90 to 98% conservation), closed circles (80 to 90%conservation), or open circles (�80% conservation). Canonical nucleotide pairs (G-C or A-U) are represented by dashes, wobble nucleotide pairs (G-U)are represented by small closed circles, A-G nucleotide pairs are represented by large open circles, and all other pairs are represented by large closed circles.
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terminal groups received high bootstrap support even in the par-tial 16S analysis (see Fig. S1 in the supplemental material).
DISCUSSIONHost specificity of Hymenoptera-associated lactobacilli. Hyme-noptera ranging from a solitary species (A. pura) to species thatlive in colonies numbering in the hundreds of thousands (Sole-nopsis) associate with lactobacilli that are either found in otherhosts or the environment. Social structure by itself does not deter-mine whether hymenopteran hosts associate with lactobacilli thatare host-specific or that are more recent acquisitions from theenvironment. Honey bees (colony sizes up to 60,000 [55]) andbumble bees (colony sizes from 50 to �400 [55]) are the onlyhymenopteran hosts examined to date that associate with lacto-bacilli that appear to be host specific and highly diverged fromother lactobacilli.
Previous studies already suggested that the corbiculate apidsassociate with host-specific lactobacilli (see, for example, refer-ences 14, 15, and 56), but it remains unclear why honey and bum-ble bees are special in this regard. The phylotypes associated withApis mellifera form a more consistent association with their hostscompared to Bombus, and this may be related to how A. melliferafounds new colonies (15, 56). Apis mellifera colonies are foundedvia swarming, where a colony divides and approximately half ofthe workers leave with the old queen to form a new colony,whereas most ants, social wasps, and bumble bees are nonswarm-ing (see reference 57 and references therein). The founding ofcolonies by thousands of individuals may allow for the between-generation maintenance of multiple strains that have been identi-fied within A. mellifera-associated phylotypes (56). Why Bombusspecies, in which nests are always founded by single queens (58),maintain associations with host-specific bacteria remains to bedetermined in detailed studies of dispersing Bombus queens, aswell as the changes in associated microbial communities duringcolony founding. Bombus terrestris, the bumble bee whose micro-biota has been best studied (11, 12, 59), shares nectar via honey-pots inside the colony (60). Bombus species do not engage in oral-oral food exchange (trophallaxis) (61), so shared food stores (e.g.,honeypots), social contact (e.g., grooming), feces, or the nest en-vironment may serve as important means for social transmissionof bumble bee microbiota. In contrast, trophallaxis between nest-mates or other contact within the hive is known to be importantfor the establishment of the microbiota of A. mellifera (17). Mega-lopta and Solenopsis also share food within a colony via trophallaxis(31, 62) but do not harbor host-specific microbes. Trophallaxis alone,therefore, does not automatically lead to the maintenance of host-specific microbes.
Our phylogenetic analyses and BLAST searches suggest likelymechanisms regarding how environmental lactobacilli are re-cruited into association with sweat bees and ants. As we previouslyreported, sweat bees associate with lactobacilli that are related tolactobacilli isolated from flowers, and may therefore obtain thesebacteria from flowers (16). Mycocepurus smithii belongs to thegroup of attine ants that do not collect leaves to sustain growth oftheir fungus gardens, but instead collect insect frass, flower parts,seeds, and fruit-flesh (63). Two of the dominant LactobacillusOTUs associated with M. smithii (L. johnsonii and L. crispatus)have been isolated from A. mellifera guts (64), indicating that theselactobacilli may occur in the guts and frass of other insects. Myco-cepurus smithii colonies may therefore recruit L. johnsonii, L.crispatus, and L. salivarius from insect frass that they collect tosustain their fungus gardens. These lactobacilli are found in bothM. smithii fungus gardens and workers, indicating that they canoccupy broad ecological niches. Alternatively, M. smithii may becollecting fecal material of vertebrates such as mice, birds, or pigs,all of which are hosts to the lactobacilli associated with M. smithii.
Solenopsis, on the other hand, is omnivorous (65) and may beobtaining lactobacilli from plant, insect, or vertebrate foodsources. The most abundant Lactobacillus in Solenopsis was mostclosely related to an undescribed Lactobacillus species from fer-mented tea. This OTU was found to associate with S. invicta and S.geminata in Argentina, North America, and Taiwan, indicatingthat it might play an important role in the biology of Solenopsis.Lactobacillus plantarum, whose comparatively large genome mayallow it to inhabit a variety of environments (66), was also foundto associate with S. invicta and S. geminata in Argentina, NorthAmerica, and Taiwan. Lactobacillus plantarum is found in dairy,meat, plants, and the human gastrointestinal tract and may berecruited by Solenopsis from any of these sources. It is currentlyunknown whether these associations derived from an acquisitionby a Solenopsis lineage ancestral to the invasive Solenopsis lineages
TABLE 1 Maximum patristic distances of the major clades in the mostlikely full-length 16S phylogenetic tree, out of a maximum patristicdistance of 1.51 across the entire tree
Clade Patristic distance
L. salivarius 0.5L. casei 0.44L. buchneri 0.54L. plantarum 0.34L. reuteri 0.55L. delbrueckii (acidophilus) 1.21
FIG 4 Histogram of patristic distances from the base of monophyletic cladesof Hymenoptera associates to their most recent common ancestor. The honeybee-associated Firm3 and Firm4 clades exhibited the greatest divergence, whilethe honey bee-associated Firm5 clade exhibited an amount of divergence sim-ilar to that of some other Hymenoptera associates.
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and were then vertically transmitted within these Solenopsis lin-eages or whether Lactobacillus is recruited continually from theenvironment by Solenopsis. Notably, we found several Firm5 se-quences, which are thought to be specific to honey and bumblebees (15), associated with Solenopsis. These sequences were notabundant, suggesting that they may be transient and perhapspicked up by Solenopsis when scavenging dead A. mellifera or Bom-bus workers.
The function of lactobacilli in hymenopteran hosts outside ofthe honey and bumble bees is still relatively unexplored, but theavailable evidence suggests that lactobacilli facilitate digestion ofsugars and inhibit the growth of other microbes through acidifi-cation, thereby benefiting their hosts. Although 16S rRNA phylo-type does not translate well into functional phenotypes (67), lac-tobacilli exhibit some general properties which may serve asexaptations for the symbiotic habit. For example, lactic acid bac-teria (LAB) digest a variety of sugars, with the main end productbeing lactic acid, although other acids and ethanol are also com-mon end products (49). By lowering the pH of their environment,LAB inhibit the growth of many other bacteria (68). LAB are also
known for the secretion of bacteriocins, which are compoundsthat inhibit the growth of other bacteria (68). For example, L. sakeiproduces several bacteriocins that inhibit pathogenic and spoilageorganisms (69). These general properties of lactobacilli mean thatthey are likely to be beneficial to hymenopteran hosts, and furtherresearch should determine the relative importance of acidificationversus bacteriocin-secretion in the biology of ant- and bee-asso-ciated Lactobacillus.
Utility of the 16S rRNA gene for Lactobacillus identificationand phylogeny. Although our analysis of 16S rRNA did not re-solve the deeper branches in the Lactobacillus phylogeny, 16SrRNA did place sequences into terminal clades with confidence.Clade membership in all of our analyses was generally well sup-ported and largely agrees with the clade structures suggested inprevious studies (47–50). By using alignments based on full-length sequences only, partial and complete sequences combined,and partial sequences only, we were able to assess the influence ofmissing data or 454 pyrosequencing length data on phylogeneticreconstructions. Although the analysis using only partial sequencesperformed poorly with regard to the placement of deeper branches,
TABLE 2 Ten most abundant Lactobacillus OTUs (clustered at �97% sequence identity) associated with three ant and three bee species (bee speciesare binned as halictids)a
Host Source of read No. of reads Closest phylogenetic relative Best BLAST hitSequenceidentity (%)
Solenopsis Brood geminata TX 5,993 Undescribed L. sakei 92Brood geminata TW 2,118 L. plantarum L. plantarum 99Brood invicta TX 935 L. curvatus L. curvatus 99Brood invicta TX 756 L. brevis L. brevis 99Pooled invicta TW 661 L. plantarum L. plantarum 99Pooled invicta TW 324 L. plantarum L. plantarum 99Pooled geminata TW 261 L. paracasei L. casei 99Brood geminata TW 167 L. kimchicus L. odoratitofui 99Brood geminata TW 156 Undescribed L. sakei 93Brood geminata TW 116 L. vaccinostercus L. vaccinostercus 99
Mycocepurus smithii Garden 14,152 L. johnsonii L. johnsonii 99Worker 3,748 L. crispatus L. crispatus 99Garden 2,794 L. salivarius L. salivarius 97Garden 1,059 L. aviarius L. aviarius 99Garden 806 L. crispatus L. crispatus 98Worker 598 L. salivarius L. salivarius 99Garden 586 L. reuteri L. reuteri 99Worker 431 L. salivarius L. salivarius 98Worker 420 L. aviarius/L. johnsonii L. aviarius 90Garden 408 L. johnsonii L. johnsonii 95
Halictids Larva 20,669 L. kunkeei/L. ozensis L. kunkeei 93Pollen 15,761 L. fructivorans L. fructivorans 91Larva 3,923 L. kunkeei/L. ozensis L. kunkeei 93Pollen 3,631 L. kunkeei/L. ozensis L. kunkeei 94Pollen 1,991 L. kunkeei/L. ozensis L. kunkeei 93Pollen 1,557 L. fructivorans L. fructivorans 90Larva 1,455 L. kunkeei/L. ozensis L. kunkeei 93Pollen 1,285 L. kunkeei/L. ozensis L. kunkeei 94Frass 1,102 L. paracasei L. casei 99Pollen 397 L. kunkeei/L. ozensis L. kunkeei 94
a The source of read indicates the types of samples from which the OTUs were isolated (TX, Texas; TW, Taiwan; pooled, workers and brood from five colonies). The number ofreads represents the number of reads that cluster into each OTU. The closest phylogenetic relative is the closest Lactobacillus species in our phylogenetic reconstruction with which aparticular read clustered (Fig. 2). The best BLAST hit is the top hit to a named Lactobacillus species from a BLAST search of NCBI’s entire nucleotide collection. The sequenceidentity is the percent sequence identity of the query to the best BLAST hit. Several OTUs shared top BLAST hits to the same Lactobacillus species but shared �97% sequenceidentity to each other.
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all of our analyses placed sequences into terminal clades with confi-dence.
Other studies have found that short pyrosequencing data canbe placed accurately into an existing full-length phylogeny (70),and our results suggest that if a highly variable region can be ac-curately aligned, alignments built on short pyrosequencing sizeddata can accurately place sequences into terminal clades. Our sec-ondary structural models of 16S rRNA indicate that the hairpinstem and loop in V1 is the most variable region in Lactobacillus.Next-generation sequencing surveys targeting V1 should providethe best taxonomic resolution for closely related lactobacilli.
Conclusions. We created highly accurate comparative modelsof 16S rRNA secondary structure and used these models to pre-cisely align the entire 16S rRNA gene, including fast-evolving re-gions. Maximum-likelihood phylogenetic reconstructions usingour structurally informed sequence alignments revealed that honeyand bumble bees associate with host-specific Lactobacillus. In con-trast, regardless of colony size or within-colony oral sharing offood (trophallaxis), sweat bees and ants associate with lactobacillithat are closely related to those found in vertebrate hosts or indiverse environments. Host specificity therefore appears to be theexception rather than the rule for Hymenoptera-associated lacto-bacilli. Nest founding by colony fission has been proposed as alikely means for long-term transmission of microbiota withinhoney bee lineages (15). M. smithii may facultatively found nestsby colony fissioning (34), and yet we found that M. smithii doesnot associate with host-specific lactobacilli. This suggests that (i)facultative colony fissioning is not sufficient to maintain long-term associations between a social-insect lineage and all host-spe-cific microbiota; (ii) regular colony founding by single queensmay disrupt long-term associations because new microbiota arefrequently acquired by a social-insect lineage during that stage;and (iii) obligate colony fissioning is more likely than facultativecolony fissioning to maintain long-term host-microbe specifici-ties in a social insect. Studies of lactobacilli associated with otherobligate colony-fissioning Hymenoptera such as meliponine beesand related solitary and communal nesters such as euglossine bees(55) will help determine whether colony-fissioning or some othercharacteristic of apid biology promotes host specificity. Regardlessof how they are acquired, lactobacilli are known to inhibit thegrowth of other microbes and may be beneficial whether they arecoevolved with their host or are recruited by the host from envi-ronmental sources through mechanisms of partner choice.
ACKNOWLEDGMENTS
This material is based on work supported by National Science Foundationgrant PRFB-1003133 awarded to Q.S.M. and grant DEB-0919519awarded to U.G.M., Texas Higher Education Coordinating Board grant01923 awarded to L. E. Gilbert, and National Institutes of Health grantGM067317 awarded to R.R.G.
We appreciate technical assistance from D. A. Estrada in the initialprocessing of the Solenopsis sequences. We thank three anonymous re-viewers for their helpful comments.
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Supplemental file S1. Supplemental text for 16S rRNA sequence alignment, secondary structure models, and Lactobacillus phylogenetics. 16S rRNA secondary structure models for 38 lactobacilli and 9 other Firmicutes. Canonical nucleotide pairs (G-C or A-U) are represented by dashes, wobble nucleotide pairs (G-U) are represented by small closed circles, A-G nucleotide pairs are represented by large open circles, and all other pairs are represented by large closed circles. The role of 16S rRNA secondary structure in Lactobacillus phylogenetics
Introduction
The 16S rRNA gene has so far failed to yield robust phylogenies for the genus Lactobacillus (1), despite an abundance of 16S rDNA sequence information (68,044 sequences, National Center for Biotechnology Information nucleotide database, accessed 14 June 2012). Previous 16S Lactobacillus phylogenies, however, did not utilize the higher order structure of the 16S RNA molecule to optimize the sequence alignment, an essential step to reconstruct the best phylogenetic tree (2, 3). Comparative structural models of the Lactobacillus 16S rRNAs will improve the quality of sequence alignments and improve phylogenetic reconstructions and the analysis of 16S-based next-generation sequencing surveys of bacterial communities. Of the nine hypervariable regions of the 16S gene, some windows (e.g.V3-V5, positions ~400- 860 Escherichia coli numbering) are not sufficient for classification of most human-associated Lactobacillaceae sequences to the genus level (4). Other 16S regions, such as V1-V2 (positions ~60- 220 E. coli numbering), may allow for better resolution (5). In addition, better alignments that explicitly juxtapose analogous secondary structure may also improve taxonomic assignment of next-generation 16S amplicon sequences. Due to the ubiquitous use of 16S rRNA information for bacterial identification and phylogenetic reconstruction, knowledge of 16S secondary structure and its utility in DNA sequence alignments is clearly needed. Methods Sequence Alignment and RNA Secondary Structure
Comparative analysis is used to identify an RNA secondary structure that is common to a set of sequences that are known to have the same function and higher-order structure. Starting in the early 1980's, covariation analysis, a specific type of comparative analysis, was applied to a sequence alignment to predict a Bacterial 16S rRNA secondary structure (6). Initially the simplier covariation methods only identified canonical base pairs (ie. G:C, A:U, and G:U) that occurred within a regular helix composed of at least two base pairs that are consecutive and anti-parallel with one another. However, more sophisticated covariation methods now identify all types of canonical and non-canonical base pairs with a set of nucleotides that covary with one another, regardless of their proximity to other structural elements (7, 8). In parallel with the contribution of more accurate and sensitive covariation methods, the original secondary structure models were refined as the number and phylogenetic and structural diversity of 16S rRNA sequences increased. A few of the originally proposed base pairs were removed when the variation at the two base paired positions were not coordinated (ie. variation but no covariation) in the larger dataset. In addition, new base pairs were
proposed for the larger dataset when two positions have similar patterns of variation (i.e. covariation) were identified. While the vast majority of these base pairs were canonical G:C, A:U, and G:U, a few were non-canonical, including the base pair exchanges - A:A <> G:G, A:G <> G:A, and U:U <> C:C. The vast majority of the base pairs are arranged adjacent and anti-parallel with one another to form nested helices, while a few helices formed pseudoknots and other base pairs were arranged in parallel (3).
In addition to the refinements in the comparative structure models, our confidence in the proposed comparative structure model were quantified and increased with the larger datasets that were analyzed with more sophisticated computational methods (9). With a sufficiently broad sampling of Bacterial 16S rRNAs, strong and robust patterns of sequence and secondary structure conservation and variation were discovered. Patterns of structural variation at specific regions of the 16S rRNA were identified and shown to be diagnostic of the organisms on specific branches of the phylogenetic tree (2, 9, 10) (www.rna.ccbb.utexas.edu/SAE/2B/ConsStruc/). While the accuracy of regions of the rRNA comparative structure models were substantiated with site directed mutagenesis, chemical modifications, and other experiments, the most authoritative assessment of the accuracy was determined from the high resolution crystal structures of the 30S and 50S ribosomal subunits (11, 12). Approximately 97% of the base pairs, including all of the non-canonical base pairs, psuedoknots, and other irregular structural elements in the comparative 16S rRNA secondary structure models are in the crystal structure (13). The strength of the covariation for each predicted base pair has been quantified and used as a confidence rating for each base pair (http://www.rna.ccbb.utexas.edu/SAE/2A/nt_Frequency/BP/). Given this very high accuracy, as gauged with the high-resolution crystal structures, we are most confident that all or nearly all of the base pairs in the comparative structure models for the rRNAs from different organisms are also correct, including all of the 16S rRNA secondary structure models for the Lactobacillus.
The accuracy of these predicted secondary structure models are directly associated with the quality of the sequence alignment. Better alignments facilitate better comparative structure models. And vice a versa, very accurate comparative structure models are the basis for the juxtaposition of nucleotides that are components of similar and analogous structural elements, especially in those highly variable regions that can have large variances in the number of nucleotides with little or no sequence identity. Thus these secondary structure-based alignments do not attempt to maximize sequence identity a priori. Instead they attempt to maximize the alignment of similar structural elements.
After the 16S rRNA sequences were semi-automatically aligned with the template-based alignment program - CRWAlign (14). We refined the alignment manually with the alignment editor ‘‘AE2’’ (developed by T. Macke, Scripps Research Institute, San Diego, CA; 15). This tool was developed for Sun Microsystems’ (Santa Clara, CA, USA) workstations running the Solaris operating system.
The manual alignment process utilizes the CRWAlign program to identify nucleotides in a column that might not map to the same locations in the secondary and tertiary structure. A visual inspection of the alignment determines if these flagged nucleotides should be realigned. If necessary, this is done manually with the AE2 alignment editor. For regions of the alignment with high sequence similarity and
minimal variance in the number of nucleotides, the information in the primary structure is sufficient to align sequences with confidence. In contrast, for more variable regions in closely related sequences or between more distantly related sequences, a high-quality alignment can only be produced when secondary and/or tertiary structure information is included. Secondary Structure Diagrams Secondary structure diagrams were generated after the first secondary structure model was derived with comparative methods. These diagrams were refined as the model was modified based on increased data and improved covariation methods (see above). While the Comparative RNA Web (CRW) Site (http://www.rna.ccbb.utexas.edu/) contains more than 200 16S rRNA secondary structure diagrams that sample the diversity within the Bacteria, 47 secondary structure diagrams for each of the major phylogenetic groups of Lactobacillus and a few related organisms were generated for this study. The secondary structure diagrams were generated with the interactive secondary structure program - XRNA (written in the C programming language for Sun Microsystems’ workstations running the Solaris operating system by B. Weiser and H. Noller, University of California, Santa Cruz). All structure diagrams are available at: http://www.rna.ccbb.utexas.edu/. Discussion: Utility of 16S rDNA for Lactobacillus identification and phylogeny Our secondary structural models of 16S rRNA indicate that the hairpin stem and loop in V1 is the most variable region in Lactobacillus. Accordingly, 16S primers targeting this region for next-generation sequencing surveys of Lactobacillus should provide the best taxonomic resolution for closely related taxa. Other regions that exhibit variation are bases 180-200, 440-480, 997-1043, and 1242-1294 (E. coli numbering), although these regions will not provide the same resolution as V1-V2. The structural models that we present here will also serve as valuable resources for aligning Lactobacillus 16S rRNA.
Our 16S rRNA phylogenetic tree had high support values for terminal branching patterns but not deeper branching patterns in the Lactobacillus phylogeny. Even with our highly accurate and structurally informed sequence alignment, the 16S rRNA gene did not confidently resolve the deeper branches in the Lactobacillus phylogeny. The Lactobacillus phylogeny has so far been reconstructed using both 16S rDNA sequence information (1, 16-18) or with phylogenomic data, using information from many genes (1, 16). The phylogenomic approach, while resolving deeper branches with confidence, results in trees with few taxa. Multilocus sequence typing schemes have been developed for several lactobacilli and their relatives (19-24), and sequences from these studies may be useful in designing primers for single copy protein coding genes conserved across the genus Lactobacillus, thereby providing greater phylogenetic resolution and coverage of the genus.
While our analysis of 16S rRNA did not resolve the deeper branches in the Lactobacillus phylogeny, 16S rRNA does place sequences into terminal clades with confidence. Clade membership in all of our analyses was generally well supported, and largely agrees with the clade structures suggested in previous studies (16-18). By using
alignments based on full-length sequences only, partial and complete sequences combined, and partial sequences only, we were able to assess the influence of missing data or 454 pyrosequencing length data on phylogenetic reconstructions. Although the full-length and partial and complete analyses differed in the placement of some deeper branches, the inclusion of partial sequences had little effect on the overall results. The placement of the partial and complete sequences into their respective clades was almost completely congruent with the phylogeny based on full-length sequences. The analysis using only partial sequences performed poorly with regard to the placement of deeper branches, but placed sequences robustly into terminal clades remarkably well. Other studies have found that short pyrosequencing data can be placed accurately into an existing full-length phylogeny (25), and our results suggest that if a highly variable region (i.e., the V1 region for Lactobacillus) can be accurately aligned, alignments built on short pyrosequencing sized data can accurately place sequences into terminal clades. Implications for Lactobacillus systematics
By gathering all publicly available 16S sequences and clustering sequences that shared 97% or greater sequence identity, we created an updated, complete representation of the diversity of the genus Lactobacillus. In agreement with previous studies (17), we determined that the L. delbrueckii (acidophilus) clade represents a significant portion of Lactobacillus diversity. Also in agreement with previous studies (1, 26), we determined that Paralactobacillus and Pediococcus are within Lactobacillus, and that the overall taxonomy of the genus Lactobacillus needs significant revisionary work. References: 1. Claesson, M. J., D. van Sinderen, and P. W. O'Toole. 2008. Lactobacillus
phylogenomics-towards a reclassification of the genus. International Journal of Systematic and Evolutionary Microbiology 58:2945-2954.
2. Woese, C. R. 1987. Bacterial evolution. Microbiological Reviews 51:221. 3. Gutell, R. R., N. Larsen, and C. R. Woese. 1994. Lessons from an evolving
rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiological Reviews 58:10-26.
4. Jumpstart Consortium Human Microbiome Project Data Generation Working Group. 2012. Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research. PLoS ONE 7:e39315.
5. Kullen, M. J., R. B. Sanozky-Dawes, D. C. Crowell, and T. R. Klaenhammer. 2000. Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex. Journal of Applied Microbiology 89:511-516.
6. Woese, C. R., L. J. Magrum, R. Gupta, R. B. Siegel, D. A. Stahl, J. Kop, N. Crawford, R. Brosius, R. Gutell, J. J. Hogan, and H. F. Noller. 1980. Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Research 8:2275-2294.
7. Gutell, R., A. Power, G. Hertz, E. Putz, and G. Stormo. 1992. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Research 20:5785-5795.
8. Shang, L., W. Xu, S. Ozer, and R. R. Gutell. 2012. Structural constraints identified with covariation analysis in ribosomal RNA. PLoS ONE 7:e39383.
9. Cannone, J., S. Subramanian, M. Schnare, J. Collett, L. D'Souza, Y. Du, B. Feng, N. Lin, L. Madabusi, K. Mueller, N. Pande, Z. Shang, N. Yu, and R. R. Gutell. 2002. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3:2.
10. Gutell, R. R. 1992. Presented at the The Symposium--The Origin and Evolution of Prokaryotic and Eukaryotic Cells, Shimoda, Japan.
11. Wimberly, B. T., D. E. Brodersen, W. M. Clemons, R. J. Morgan-Warren, A. P. Carter, C. Vonrhein, T. Hartschk, and V. Ramakrishnan. 2000. Structure of the 30S ribosomal subunit. Nature 407:327-339.
12. Ban, N., P. Nissen, J. Hansen, P. B. Moore, and T. A. Steitz. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 a resolution. Science 289:905-920.
13. Gutell, R. R., J. C. Lee, and J. J. Cannone. 2002. The accuracy of ribosomal RNA comparative structure models. Current Opinion in Structural Biology 12:301-310.
14. Gardner, D. P., W. Xu, D. P. Miranker, S. Ozer, J. J. Cannone, and R. R. Gutell. In Press. Presented at the IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), Philadelphia, USA.
15. Larsen, N., G. J. Olsen, B. L. Maidak, M. J. McCaughey, R. Overbeek, T. J. Macke, T. L. Marsh, and C. R. Woese. 1993. The ribosomal database project. Nucleic Acids Research 21:3021-3023.
16. Canchaya, C., M. J. Claesson, G. F. Fitzgerald, D. Van Sinderen, and P. W. O'Toole. 2006. Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152:3185-3196.
17. Felis, G. E., and F. Dellaglio. 2007. Taxonomy of Lactobacilli and Bifidobacteria. Current Issues in Intestinal Microbiology 8:44-61.
18. Pot, B., and E. Tsakalidou. 2009. Taxonomy and metabolism of Lactobacillus, p. 3-58. In A. Ljungh and T. Wadstrom (ed.), Lactobacillus Molecular Biology: from Genomics to Probiotics. Caister Academic Press, Norfolk, UK.
19. Ruiz-Garbajosa, P., M. J. M. Bonten, D. A. Ronbinson, J. Top, S. R. Nallapareddy, C. Torres, T. M. Coque, R. Canton, F. Baquero, B. E. Murray, R. del Campo, and R. J. L. Willems. 2006. Multilocus sequence typing scheme for Enterococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination. Journal of Clinical Microbiology 44:2220-2228.
20. Berger, B., D. P. Pridmore, C. Barretto, F. Delmas-Julien, K. Schreiber, F. Arigoni, and H. Brussow. 2007. Similarity and differences in the Lactobacillus acidophilus group identified by polyphasic analysis and comparative genomics. Journal of Bacteriology 189:1311-1321.
21. Cai, H., B. T. Rodriguez, W. Zhang, J. R. Broadbent, and J. L. Steele. 2007. Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity. Microbiology 153:2655-2665.
22. Raftis, E. J., E. Salvetti, S. Torriani, G. E. Felis, and P. W. O'Toole. 2011. Genomic diversity of Lactobacillus salivarius. Applied and Environmental Microbiology 77:954-965.
23. Picozzi, C., G. Bonacina, I. Vigentini, and R. Foschino. 2010. Genetic diversity in Italian Lactobacillus sanfranciscensis strains assessed by multilocus sequence typing and pulsed-field gel electrophoresis analyses. Microbiology 156:2035-2045.
24. Buhnik-Rosenblau, K., V. Matsko-Efimov, M. Jung, H. Shin, Y. Danin-Poleg, and Y. Kashi. 2012. Indication for co-evolution of Lactobacillus johnsonii with its host. BMC Microbiology 12:149.
25. Liu, Z., C. Lozupone, M. Hamady, F. D. Bushman, and R. Knight. 2007. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Research 35:e120.
26. Haakensen, M., V. Pittet, and B. Ziola. 2011. Reclassification of Paralactobacillus selangorensis Leisner et al. 2000 as Lactobacillus selangorensis comb. nov. International Journal of Systematic and Evolutionary Microbiology 61:2979-2983.
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5ʼ
3ʼ
Lactobacillus acidophilus (GenBank accession number M58802)
1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.LactobacillusJune 2012
NNAAAACGAG A G U U
U GAUCCUGGCUCAGGAC
GAACGCUGGCGGCG
UG
CCUA
AUACAUGC
AA
G U CG A
G C G A G C U G A
ACCAACAGAUUCACU
UCGGUGAUGACGUUGGGNAACGCUAGCGGC
GG
AUGGGUGAGU
AACA
CGUGGGGA
ACC U
GCC
CCAUAG
UC U G GGA U A
C C A C U U G GAA
ACAGGUGCUAAUA
CCGGAUA
AG
AAAGCAGAUCG
CAUGAUCAGCUUA
UA
AAAGGCGGCG
UA
A G C U G U C GCUAUGGN
NU
GGCCCCGCGGUGC
AUUA
GCUAGUUGGUAGG
GUAA
CG
G CCUACCAAGGC
AAU G A U
GCAU
A GCCGAGUUG
AG AGA C U
G AU
C GGC CACA
UUGGGACUGA
GA
C A C GG C C C A A
ACUCC
UA
C GGGAG G C A G
CNGUAGGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA CGCCGCGUGAGU
GAAGAAGGUUU
UC
G G A U CGU A A A
G C U CUGUUGUUGGUGA
AGAAG
GAUAGAGGUAG
UAA C U
GGCCUUUA U UUGAC G GU
AAUCAACCAGA
AAGUCACGGC
U A A CUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCNAGCGUU
GUCCG
GAUUU
AU
U G GGCGUA
AA
GCGAGCG
C
AGGCGGAAGAAU
AAGUCUGAUGUG
AAAGCCCUCGGCU
UA A C C G A G G A A C U G C A U C G G A
AAC U G U U U U U C
UU
GAGUGCAGAAG
AGGAGAGU
GGAACUCCAUGUGUAGCGGUGG
A A U G CG
U A G AUA U A U G G A A G A A C AC C A G
U GG C GA
AGGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC N
NA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AGUGUUGGGAGGU U U
CC
GCCUCUCAGUGCU GCAGC U
AAC
GCAUUAAGCACUC
CGCCU
G G GGA G U AC
G A C C GCAAGGUU
GAAACUC
AAAG G A A U U G A C G
GG G N C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAUUCG
AAGC
AAC G CGAA
GAA
C C U UA C
CAGGUCU
UGA
CAUC
UAGUGCAAUCCGUAGAG
A U A C G G N G U UCCCU
U CGGGGACACUA A
GAC AGGU GGUGC
A UGGCUGUCG
UCA
GCUCGUGUCG
UGAGAUGUUGGG
UU A A G
UCCCG C
AA C G A G U
G C A A CC C U U G U C A U U A G U U G C C
A GC A U U
AA
GUUGGGCACU
CUAAUGAGACUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUCAAGUC
AUC
AUGCCCC U
UA
UGACCUGGGCU
ACACACGUGCUAC A A U
GGACAGUAC
A A C GAGGA GC
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UAAAGCUGUUC
UCA
GUUC
GGACUGCAGUC U
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GG
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UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGAA
UA
CGU
UCCCGGGCCUUGU
ACA
CACCGCCCG
UC
ACACCAUGG
GAGUCUGCAAUGCC
CAAA
GCCGGU
GGCCUA
A CCU
U CGGG
AAGGA
GCCGUCUAA
GGCAGGGCAGAUGA
CNNNNNNNN
NNN
NGU
AAC
A AGN
N N N N N N N N N N NGA
ACCUGNNNNNNGAUCACCUCCUUUCUA
Canonical nucleotide pairs (G-C or A-U) are represented by dashes, wobble nucleotide pairs (G-U) are represented by small closed circles, A-G nucleotide pairs are represented by large open circles, and all other pairs are represented by large closed circles.
Taxonomy:
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’Lactobacillus delbrueckii subsp.
bulgaricus 2038 (CP000156)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus delbrueckii 9.Lactobacillus delbrueckii subsp. bulgaricus July 2012
AAAUUGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GA GC U GA A U U C A A A GA U U C C UU
CGGGAUGAUUUGUUGGACGCUAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGC A
AUC
UG
CCCUAAAG
A C U G GG
A U AC C A C U U G G
AA
ACAGGUGCU
AAUA
CCGGAUA
AC
AACAUGAAUCG
CAUGAUUCAAGUU
UG
AAAGGCGGCG
CA
A G C U G U C ACUUUAGG
AU
GA
GCCCGCGGC
GCA
UU
AG
CUA
GUU
GG
UG
GGG
UAAAG
G CC
UA
CC
AA
GG
CAAU G A
UG
CG
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
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G G A U CGU A A A
G C U CU
GU
UG
UU
GG
UGAAGAAG
GAU
AG
AG
GC
AGUA
A C UG
GU
CU
UU
A U UUGAC G G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
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AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
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GUAA
AGC
GAGCG
C
AGGCGGAAUGAU
AAGUCUGAUGUG
AAA
GCCCACGGCU
CA A C C G U G G A A C U G C A U C G G A
AAC U G U C A U U C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
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A G AUAC
CCUG
GUA
GU
CCAUGC C G U
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GAU
G A G C G C U A GG
UG
UU
GG
GG
ACU U U
CC
GGU
CC
UC
AG
UG
CC G
CAG
C AA
ACG
CAUUA
AGCGCUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
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AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
GU
GCUACACCUAGAG
A U A G G U G G U UCCCU
U CGGGGA
CG
CA
G AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C U U U A G
U U GC C
A UC A U U
AA
GUUGGGCACU
CUAAAGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GC
AG
UAC
A A C GA
GAA G
CG
A A CC
CG C
GA
GG
GU
AAG
CG
GAU
CU
CU
UAAAG
CU
GU
UCUCA
GU
UCGGACUGCAGGC
UGC
AACUCGCCUGCAC
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
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CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGG
AAGUCUGCAAUGCC
CAAA
GUCGGU
GGGAUA
A CCUU
U AUAGG
AGUCA
GCCGCCUAA
GGCAGGGCAGAUGA
CUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCUAAGGAA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus amylovorus GRL 1112 (CP002338)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus amylovorus July 2012
UUUAAAAUGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GA GC GGA A C C A A C A GA U U U A C UU
CGGUAAUGACGUUGGGAAAGCGAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGGA
ACC
UG
CCCCUAAG
UC U G GG
A U AC C A U U U G G
AA
ACAGGUGCU
AAUA
CCGGAUA
AU
AAAGCAGAUCG
CAUGAUCAGCUUU
UG
AAAGGCGGCG
UA
A G C U G U C GCUAAGGG
AU
GG
CCCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CGAC G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
G C U CU
GU
UG
UU
GG
UGAAGAAG
GAU
AG
AG
GU
AGUA
A C UG
GC
CU
UU
A U UUGAC G G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGAAAAAU
AAGUCUAAUGUG
AAA
GCCCUCGGCU
UA A C C G A G G A A C U G C A U C G G A
AAC U G U U U U U C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GU
GCAAUCUGUAGAG
A U A C G G A G U UCCCU
U CGGGGA
CG
CU
A AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U A U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GC
AG
UAC
A A C GA
GAA G
CA
A GCC
UG C
GA
AG
GC
AAG
CG
AAU
CU
CU
GAAAG
CU
GU
UCUCA
GU
UCGGACUGCAGUC
UGC
AACUCGACUGCAC
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGG
GAGUCUGCAAUGCC
CAAA
GCCGGU
GGCCUA
A CCU
U CGGG
AAGGA
GCCGUCUAA
GGCAGGGCAGAUGA
CUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCUAAGGAAG
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus gasseri ATCC 33323 (AF519171)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus gasseri July 2012
AAAAUGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G AG
CG
AG
CU
UG C
CU
AG
AU
GA
AU
UU
GG
UG
CU
UGC
AC
CA
GA
UG
AA
AC
UA
GAUAC
AA
GC
GA
GCGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAAGAG
A C U G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGGAUA
AC
AACACUAGACG
CAUGUCUAGAGUU
UA
AAAGAUGGUU
CU G C U A U C A
CUCUUGG
AU
GG
ACCUGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CAAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
G C U CU
GU
UG
GU
AG
UGAAGAAA
GAU
AG
AG
GU
AGUA
A C UG
GC
CU
UU
A U UUGAC G G
UAA
UU
AC
UU
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUCAAU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
CA A C C G G A G A A U U G C A U C A G A
AAC U G U U G A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CA
GU
GCAAACCUAAGAG
A U U A G G U G U UCCCU
U CGGGGA
CG
CU
G AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C A U U A G
U U GC C
A UC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GAA G
CG
A A CC
UG C
GA
AG
GC
AAG
CG
GAU
CU
CU
GAAAG
CC
GU
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUCUGUAACACC
CAAA
GCCGGU
GGGAUA
A CCUU
U AUAGG
AGUCA
GCCGUCUAA
GGUAGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus delbrueckii subsp. lactis(M58823)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus delbrueckii June 2012
NNCAAAUUGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GA GC U GA A U U C A A A GA U U C C UU
CGGGAGGAUUUGUUGGANNNNAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGC A
AUC
UG
CCCUAAAG
A C U G GG
A U AC C A C U U G G
AA
ACAGGUGCU
AAUA
CCGGAUA
AC
AACAUGAAUCG
CAUGAUUCAAGUU
UG
AAAGGCGGCG
CA
A G C U G U C ACUUUAGG
AU
GA
GCCCGCGGC
GCA
UU
AG
CUA
GUU
GG
UG
GGG
UAAAG
G CC
UA
CC
AA
GG
CAAU G A
UG
CG
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUCUUC
G G A U CGU A A A
G C U CU
GU
UG
UU
GG
UGAAGAAG
GAU
AG
AG
GC
AGUA
A C UG
GU
CU
UU
A U UUGAC R G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGAAUGAU
AAGUCUGAUGUG
AAA
GCCCACGGCU
CA A C C G U G G A A C U G C A U C G G A
AAC U G U C A U U C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G C G C U A GG
UG
UU
GG
GG
ACU U U
CC
GGU
CC
UC
AG
UG
CC G
CAG
C AA
ACG
CAUUA
AGCGCUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C N G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
GC
GCUACACCUAGAG
A U A G G C C G U UCCCU
U CGGGGA
CG
CA
G AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C U U U A G
U U GC C
A UC A U U
AA
GUUGGGCACU
CUAGAGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GC
AG
UAC
A A C GU
GAA G
CG
A A CC
CG C
GA
GG
GU
AAG
CG
GAU
CU
CU
UAAAG
CU
GC
UCUCA
GU
UCGGACUGCAGGC
UGC
AACUCGCCUGCAC
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGG
AAGUCUGCAAUGCC
CAAA
GUCGGU
GGGAUA
A CCUU
U AUAGG
AGUCA
GCCGCCUAA
GGCAGGGCAGAUGA
CUGGGGNNN
NNN
NGU
AAC
A AG
N
N N N N N N N N N N NGA
ACCUGNNNNNNGAUCACCUCCUUUCUA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus sp. 61D (FR681902)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
ACCUACGUAG A G U U
U GAUCAUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G AG
CG
AG
CU
UG C
CU
AG
AU
GA
UU
UC
GG
UG
CU
UGC
AC
CG
AA
UG
AA
AC
UA
GAU
AC
AA
GC
GA
GCGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAAGAG
A C U G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGGAUA
AC
AACAUCUAGCG
CAUGCUAGAAGUU
UG
AAAGAUGGG
UU
U C U A U C ACUCUUGG
AU
GG
ACCUGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CAAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
G C U CU
GU
UG
GU
GG
UGAAGAAA
GAU
AG
AG
GU
AGUA
A C UG
GC
CU
UU
A U UUGAC G G
UAA
UC
AC
CU
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUCAAU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
CA A C C G G A G A A U U G C A U C A G A
AAC U G U U G A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CA
GU
GCAAACCUAAGAG
A U U A G G U G U UCCCU
U CGGGGA
CG
CU
G AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C A U U A G
U U GC C
A UC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GAA G
CG
A A CC
UG C
GA
AG
GC
AAG
CG
GAU
CU
CU
GAAAG
CC
GU
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUCUGUAACACC
CAAA
GCCGGU
GAGAUA
A CC
AU
U AAA
GG
AGUCA
GCCGUCUAA
GGUAGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGUUGGAUCACCUCCUUA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured bacterium (DQ922980)1.cellular organisms 2.Bacteria 3.environmental samples July 2012
UUUAAUCGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G AA
CG
CA
CU
C UU
GU
UU
AG
AU
UG
AA
GG
AGC
UUG
CU
CC
UC
AU
UG
AU
AA
AC
AUU
UG
AG
UG
AG
UGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCUAAAG
UG G G GG
A U AA C A U U U G G
AA
AAAGAUGCU
AAUA
CCGCAUA
AA
ACCUAACAUCG
CAUGGUGUAGGGU
UG
AAAGAUGGUU
UC
G G C U A U C ACUUUAGG
AU
GG
ACCCGCGGU
GCA
UU
AG
UUA
GUU
GG
UG
AGG
UAAAG
G CU
CA
CC
AA
GA
CCGU G A
UG
CA
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
ACUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
GA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
GG
AGAAGAAU
GUA
UC
UG
AU
AGUA
A C UG
AU
CA
GG
UA GUGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUCUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
CA A C C G A A G A A G U G C A U C G G A
AAC U G G G A A A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUCUAGAG
A U A G A G C U U UCCCU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A C U A G
U U GC C
A GC A U U
UA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGG
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GUU G
CG
A GAC
CG C
GA
GG
UU
UAG
CU
AAU
CU
CU
UAAAA
CC
AU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCCU
U CGGGG
AGCCA
GCCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCUA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus salivarius(AB186340)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NNN N N N N
N NNNNNNNNNNNNN
NN
NNN
NN
AC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A A C U U U
CUUAC
ACC
GAAUGC
UUGCUUU
CACC
GUAAG
AAGUUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CUUGGGU A
ACC
UG
CCUAAAAG
A A G G GG A U A
A C A C U U G GAA
ACAGGUGCU
AAUA
CCGUAUA
UC
UCUAAGGAUCG
CAUGAUCCUUAUA
UG
AAAGAUGGUU
CU G C U A U C G
CUUUUAG
AU
GG
ACCCGCGGC
GUA
UU
AA
CUA
GUU
GG
UG
GGG
UAACG
G CC
UA
CC
AA
GG
UGAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUCUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
ACG
AG
UG
AG
AGUA
A C UG
UU
CA
UU
CG A UGAC G G
UAU
CU
AA
CC
AG
CA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUCUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G U A G U G C A U U G G A
AAC U G G A A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAAUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACCUAAGAG
A U U A G G C U U UCCCU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U G U C A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUGGCGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CG
A GAC
CG C
GA
GG
UU
UAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGAA U
CA
GCAUG
UC
GC
GG
UGA
AU
ACGU
UAC
CCGGGCCUUGU
ACA
CUCCGCCCG
UC
ACACCAAGA
GAGUUUGUAACACC
CAAA
CCCGGU
GGGGUA
A CCG
C AAGA
AACCA
CCGUCUAA
GGUGGGACAGAUGA
UUGGGG
GAAG
UCG
AAC
A AG
G
A G C C GA
G A C N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus apodemi (AJ871178)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NNN N N N N
N NNNCCUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A G C U U C
UUUAU
CAC
CGAGUGC
UUGCACUC
ACCG
AUAAA
GAGCUUAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUGGGC A
ACC
UG
CCCAAAAG
A G G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
AC
CACAGUUACCG
CAUGGUAACUGUG
UG
AAAGGUGGCU
AU G C U A C C G
CUUUUGG
AU
GG
GCCCGCGGC
GCA
UU
AG
CUA
GUU
GG
UG
AGG
UAAAG
G CU
UA
CC
AA
GG
CAAU G A
UG
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
AA
A G C C U G A U G G A GCAA C
GC
CG
CGUGGGUG
AAGAA
GGUCUUC
G G A U CGU A A A
A C C CU
GU
UG
UU
AG
AGAAGAAA
GUG
CG
UG
AG
AGUA
A C UG
UU
CA
CG
UU UCGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUCUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G U A G U G C A U U G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAAUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GACAAUCCUAGAG
A U A G G A C U U CUCCU
U CGGGAG
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U G U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGCAA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CG
A GAC
CG C
GA
GG
UU
UAG
CA
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGUA
A CCU
U UUGG
AGCCA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGGNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus capillatus (AB365978)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG U
A C G C A A A U C U U U CA
C C GA A U G C
UU
GCAUUCAUC
GAAAGAUUUGAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAGAAG
A A G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AACAAAAACCG
CCUGGUUUUUGUU
UA
AAAGAUGGUU
CU G C U A U C A
CUUCUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAAUG
G CU
CA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
GUG
UG
UG
AG
AGUA
A C UG
UU
CA
UG
CA GUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G U C G U G C A U U G G A
AAC U G G A A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
U UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A U C G
CA
AGAUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCCAAUCUAAGAGA A U U A G A G U
UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A C U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
AG
UAC
A A C GA
GUC G
CA
A GAC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAA
CU
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCU
U UUGG
AGCCA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus hayakitensis (AB267406)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NNN N N N N
N NNNNNNNNNNNNN
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C A A C U U U C U U A CA C C
G A U G CUU
GCAUCACC
GUAAGAAAGUUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAGAAG
A G G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
UC
UCUAAGAACCG
CAUGGUUCUUAGA
UG
AAAGAUGGUU
CU G C U A U C G
CUUCUGG
AU
GG
ACCCGCGGC
GCA
UU
AA
CUA
GUU
GG
UG
GGG
UAACG
G CC
UA
CC
AA
GG
UGAU G A
UG
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
AA
A G C C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUCUUC
G G A U CGU A A A
G C U CU
GU
UG
UU
AG
AGAAGAAC
ACU
GA
UG
AG
AGUA
A C UG
UU
CA
UC
A G UUGAC G G
UAU
CU
AA
CC
AG
CA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A U A G C A U U G G A
AAC U G G A A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAAUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUUGAGAG
A U C A A G C U U UCCCU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U G U C A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUGGCGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GA
UAC
A A C GA
GUC G
CG
A GAC
CG C
GA
GG
UU
UAG
CU
AAU
CU
CU
UAAAG
UC
AU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGAA U
CA
GCAUG
UC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGUA
A CCUU
UUAGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGN
NNN
NN N
NNN
N NN
N
N N N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus saerimneri (AY255802)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NAG A G U U G
A
UCCUGGCUCAGG
AUGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
G C G C A U C G G C
CCAACUGAUUGAAGAUGC
UUGCAUCCGAUUGACGAUGGUU
UACCGAUGAGCGGC
GG
ACGGG
UG
AGU
AACA
CGUAGGU A
ACC
UG
CCCAGAAG
CG G G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
GG
UCAUUUGACCG
CAUGGUCAAAUGA
UU
AAAGAUGGCU
CU G C U A U C A
CUUCUGG
AU
GG
ACCUGCGGC
GUA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGCG
AAGAA
GGUCUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
ACG
GG
UG
AG
AGUA
A C UG
UU
CA
CC
UG UUGAC G G
UAU
CU
AA
CC
AG
CA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUUCUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A U G U G C A U U G G A
AAC U G G G G A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CACUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
UU
GACCACCUAAGAG
A U U A G G U U U UCCCU
U CGGGGA
CA
AA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U G U C A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGCGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GC
AG
UAC
A A C GA
GUC G
CG
A A AC
CG C
GA
GG
UU
UAG
CA
AAU
CU
CU
UAAAG
CU
GC
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUR
CAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGAA U
CA
GCAUG
UC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGUA
A CCU
U UUGG
AGCCA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus sp. C33LV5 (AF197125)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
UAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C GA A GC U U U U A A U C A A U A A A U G C
UUGCAUUUAGCGAUUAAAAGA
CUGAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUAGGC A
ACC
UG
CCCAAAAG
A G G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
AC
CAUGAAAACCG
CAUGGUUUUUAUG
UA
AAAGAUGGUU
UC
G G C U A U C ACUUUUGG
AU
GG
GCCUGCGGC
GUA
UU
AG
CUU
GUU
GG
UG
GGG
UAAUG
G CC
UA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAAUG
AAGAA
GGCCUUC
G G G U CGU A A A
A U U CU
GU
UG
UU
AG
AGAAGAAU
GUG
CG
UG
AG
AGUA
A C UG
UU
CA
UG
UA UUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUCUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G U A G U G C A U U G G A
AAC U G G A A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U A C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGUAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GACAAUCCUAGAG
A U A G G A C U U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U G U C A
AG
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGCGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CA
A A CU
CG C
GA
GG
GC
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGACUGCAGGC
UUG
CAACUCGCCUGCAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGAA U
CA
GCAUG
UC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGUA
A CCU
U UUGG
AGCCA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A GC
C C G U A G G AGA
ACCUGCGGCUGGAUCANNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured bacterium (GU293196)1.cellular organisms 2.Bacteria 3.environmental samples July 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C GA GA A GA U U C A U GA A C A A GU GCU
UGCAUUUGUUCGUGAUGAUUCGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAGAAG
UA G G GG
A U AC C A C U U G G
AA
ACAAGUGCU
AAUA
CCGUAUA
AC
CACAAUGACCG
CAUGGUCAUUGUG
UG
AAAGGUGGUU
CU G C U A C C G
CUUCUGG
AU
GG
ACCCGCGGC
GUA
UU
AA
CUA
GUU
GG
UA
GGG
UAACG
G CC
UA
CC
AA
GG
UGAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AAUGGGA
CUGA
GA
A C GG C C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
GA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAAUG
AAGAA
GGUCUUC
G G A U CGU A A A
G U U CU
GU
UG
UU
AG
AGAAGAAU
ACC
CA
UA
AU
AGUA
A C UG
AU
UA
UG
GG A UGAC G G
UAU
CU
AA
CC
AG
CA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAACG
C
AGGCGGUCUUAU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A U A G C A U U G G A
AAC U G U A A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCGUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAAUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCUAACCCAAGAG
A U U G G G C U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGU
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U G U C A G
U U GC C
A UC A U U
UA
GUUGGGCACU
CUGACGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
GCACGUGCUAC A A U
GG
AC
GA
UAC
A A C GA
GUC G
CA
A A AC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAA
UC
GU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCUU
U UUUGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U AA
A C N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus backi (DQ406862)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NNN N N N N
N NNNNNNNNNNNNN
NN
NGA
AC
GC
U
GGCCG
GC
GU
G
CC
UAAU
ACAUGC
A
A
G U CG A
A C GC A C A GA U A U C A A C A GA A GC U GCU
UGCAGUGGAAGUUAAUUGAUGUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCAAAAG
UG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AU
UUAAGUGACCA
CAUGGUCACUUAA
UG
AAAGAUGGUU
UC
G G C U A U C ACUUUUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
GGA
UAACG
G CC
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
UA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G AG CAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
GG
AGAAGAAC
AGG
GA
CU
AG
AGUA
A C UG
UU
AG
UC
CU A UGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AA
CUUCGGCUUA A C C G A A G A A G U G C A U U A G A
AAC U G G G A A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GUAUGGG
GA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUAC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
ACUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUGUAGAG
A U A C A G C U UU
CU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U G A C U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AGC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UU
GG
UAC
A A C GA
GUU G
CG
A A CC
CG C
GA
GG
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
AA
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CGAA
GCCGGU
GGGGUA
A CCUCU
AUGAGG
AGCUA
ACCGUCUAA
GGUGGGACAGAUGA
UUGGGGGUGN
NNN
NN N
NNN
N NN
N
N N N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus halophilus (AB240455)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NNN N G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G CA
CG
CA
CA
AC
CG
UU
AA
C CU
GA
UC
CU
GCU
UGC
AG
GU
GA
CG
UU
AA
UG
GA
CG
UG
AG
UGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
AA
CCCUGAAG
CG G G GG
A U AA C C U U U G G
AA
ACAGAGGCU
AAUA
CCGCAUAG
UU
UAUCGCGACCU
CCUGGUCGCAAUA
AU
AAAGACGGCU
UC
G G C U G U C ACUUCAGG
AC
AG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
GGA
UAAAG
G CC
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C G CU
GU
UG
UU
GG
AGAAGAAC
CGG
GG
GU
AG
AGUA
A C UG
UU
AU
CC
CC UUGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A A G G G C A U C A G A
AAC U G A G A A G C
UU
GAGGACAGAA
AA
GGAAAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUUUCU
GGUCUGUUACU
GAC
GCU
G
AGGCUC G
AA
A GUAUGGG
GA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUAC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCGCUGUCGAG
A G A C A G U U U GCCCU
U CGGGGC
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U G A C U A G
U U GC C
A GC A U U
UA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AGC
A
UGCCCC U
GA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UC
GG
GAC
A A C GA
GUA G
CG
C GCC
CG C
GA
GG
GU
UAG
CU
AAU
CU
CU
AAAAA
CC
GA
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
CCGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGCA
A CCCU
U CGGGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A A N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Paralactobacillus selangorensis (NR_024885)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Paralactobacillus July 2012
NNN N N N N
N NNNNNNNNCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A C U U U C A U C G A G U G CUU
GCACUUGAUGAAAGUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCA
AAG
CG G G GA
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AACGAAGACCA
CAUGGUCUUCGUU
UG
AAAGACGGCG
UA
A G C U G U C ACUUUGGG
AU
GG
ACCCGCGCC
GUA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CC
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
UA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
GUG
GG
UG
AG
AGUA
A C UG
CU
CA
UC
CA GUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUCUUUU
AAGUCUGAUGUG
AAA
GCCCUCGGCU
UA A C C G A G G A A G U G C A U C G G A
AAC U G G A A G A C
UU
GAAUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUGAUU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A A U A C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGUAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
CGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCUAUCUCUAGAA
A U A G A G A G U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A C U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GUC G
CU
A A AC
CG C
GA
GA
GU
CAA
CU
AAU
CU
CU
UAAAA
CC
AU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CGAA
GUCGGU
GGGGCA
A CCCG
U ANNNN
NGCUA
GCCGCCUAA
GGUGGGACCGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
N N N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus concavus (AY683322)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NNN N N N N
N NNNNNNNNNNNNN
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
AC
GA
GU
UU
CA
UU
UU
AA
GG
AU
CA
AG
GU
GCU
UGC
AC
CG
AG
AG
AA
UU
AA
AA
AG
AA
AC
GA
GUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCUAAAG
UG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
GAACGAAACCA
CAUGGUUUCGUUC
UG
AAAGAUGGCG
UA
A G C U A U C ACUUUUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UA
UC
GG
AGAAGAAC
GUA
UC
UG
GU
AGUA
A C UG
GC
CA
GG
UA GUGAC G G
UAU
CC
GA
UC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A A A U G C A U U G G A
AAC U G G G G A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GG
GGU U U
CC
GCC
CC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G C C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AG
AC C U U
ACCAGGUCU
UGA
CA
UC
UA
GC
GCCAAUCCUAGAG
A U A G G A C G U UCCCU
U CGGGGA
CG
CU
A AG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U G A U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUCA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGCGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
CU
AG
UAC
A A C GA
GUU G
CG
A GAC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
AAAAG
CU
AG
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCCG
U AAGGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus floricola (AB523781)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUCC
CUGGCUCAGG
ACGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A G U U U G C
UCUUAUGAAGGUAGUGC
UUGCACUACUUGAUUAAGAA
UC
CAAACGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCUAAAG
CG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AAUAAGAAUCG
AAUGUUUCUUAUU
UA
AAAGAUGGUU
UC
G G C U A U C ACUUUAGG
AU
GG
ACCUGCGGC
GUA
UU
AG
CUA
GUU
GG
UA
AGG
UAAUG
G CU
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AUGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAA
GAU
AG
UA
AG
AGUA
A C UG
UU
UA
UU
A U UUGAC G G
UAA
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGCUAAUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A G U G C A U U A G A
AAC U G A U U A G C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGACUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
UGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
UU
GACCACCUAAGAG
A U U A G G U U U UCCCU
U CGGGGA
CA
AA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A C U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GCA G
CG
A U AC
CG C
GA
GG
UU
UAG
CU
AAU
CU
CC
UAAAA
CC
AU
CCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCAGA U
CA
GCAUG
CU
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CGAA
GCCGGU
GAGGUA
A CCUU
UUAGG
AGCCA
ACCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUUCACCUCCUUN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus paracasei(AY773954)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus casei group June 2012
NNN N N N N
N NNNNNNNNNNNNN
NN
NNN
NN
NN
N
NNN
NN
NN
NG
CA
CACU
AUA
GUGC
A
G U CG A
A C G A G U U C UC
GUUGAUGAUCGGUGC
UUGCACCGAGAUUCAACA
UGGAACGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCUUAUG
UG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
GA
UCCAAGAACCG
CAGGGUUCUUGGC
UG
AAAGAUGGCG
UA
U G C U A U C GCUUUUGG
AU
GG
ACCCGCGGC
GUA
UU
AC
CUA
GUU
GG
UG
AGG
UAAUG
G CU
CA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
UA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG G G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CA
CGUGAGUG
AAGAA
GGCUUUC
G G G U CGU A GA
A C U CU
GU
UG
UU
GG
AAAAGAAU
GGU
CG
GC
AG
AGUA
A C UG
UU
GU
CG
GC GUGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A G U G C A U C G G A
AAC U G G A U A A C
UU
GAGUGCAGAA
GA
GGGUAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUACCU
GGUCUGCAACU
GAC
GCU
G
AGA CUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
GAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG C G C C C G
CA C A A GCA CA
GGAGCAUGUGGUU
UAAU
UG
GA
CACAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
UC
GAUCACGAGAGAC
A U C A G G U A U CCCCC
C CGGGGG
CA
AA
A AA
AC A
GU
A AAGGC
A AG
GUUGUGA
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C C U A U G A C U A G
U U GC C
A GC A C A
UA
GUUGGGCACU
CUAGUAA
A
G
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACCCGCUAC A A U
GG
AC
GG
CAC
A A C GA
GUU G
CG
A GAC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAG
CC
AU
UCUCA
CU
UCGGACUGUAGGC
GGC
AACUCGCCCACAC
GAAGU
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
AGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CGAA
GCCGGU
GGCGUA
A CCCUU UU
AGGG
AGCGA
GCCGUUUAA
GGUGGGACAAAUGA
GUAG
GUGA
AGU
C
UAG
AU G
A
G
C N N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus pantheris(AB362679)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.LactobacillusJuly 2012
UAG A G U U
U GAUCAUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC
GA
AC
UU
AA
CU
AA
AU
GA
AU
GC
GG
UG
CU
UGC
AC
CA
AG
UG
AU
UU
UA
GA
GC
GG
UG
AG
CGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCUCUAAG
CA G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGUAUA
AA
UCCUAAAACCA
CAUGGUUUUAGGC
UG
AAAGGCGGCU
UC
G G C U G U C ACUUAGAG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAAUG
G CU
CA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGCUUUC
G G G U CGU A A A
A C U CU
GU
UG
UU
GA
AGAAGAAC
ACG
UU
UG
AG
AGUA
A C UG
UU
CA
GA
CG UUGAC G G
UAU
UC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCCUCGGCU
UA A C C G A G G A A G U G C A U C G G A
AAC U G G G A A A C
UU
GAAUGCUGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCAGUUAUU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U A C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGUAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCUAUUUCUAGAG
A U A G A A A G U UCCCU
U CGGGGA
CG
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U G A C U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGUAA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UU
GG
UAC
A A C GA
GUU G
CG
A A CU
CG C
GA
GG
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
AA
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGCA
A CCCU
U CGGGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGUUGGAUCACCUCCUUA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus kunkeei(AB559820)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NNN N N N N
U GAUCAUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A G C U C U C
CCAAAUUGAUUUUAUGC
UUGCAUAAAUGAUUUUUGGAUU
CGGAGCGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCCGAAG
CG G G GG
A U AA C A U U U G G
AA
ACAAGUGCU
AAUA
CCGCAUAA
UU
AGUUGGAACCG
CAUGGUUCCAACU
UG
AAAGAUGGCU
CU G C U A U C A
CUUUGGG
AU
GG
ACCCGCGCC
GUA
UU
AG
UUA
GUU
GG
UG
AGA
UAAAA
G CC
CA
CC
AA
GA
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AUGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AA
AGAAGAAC
AAG
UG
UU
AG
AGUA
A C UG
UU
AA
CA
CU UUGAC G G
UAU
UU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUGU
AAGUCUGCUGUG
AAA
GCCCUCAGCU
CA A C U G A G G A A G U G C A G U G G A
AAC U A C A A A A C
UU
GAGUACAGAA
GA
GGAAAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUUUCU
GGUCUGUUACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U A C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGUAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GUGGU
GGAGCAUGUGGUU
UAAU
UC
GA
UGCUAC G C
GA
AGAA
C C U UA
CCAGCUCU
UGA
CA
UC
UU
CU
GCCAACCCAAGAG
A U U G G G C G U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U R U U A U U A G
U U GC C
A GC A U U
UA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
AUAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGAGCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GUC G
CG
A A AC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAG
CC
AU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGU
UG
GAAUCAC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GACGAU
GGGGUA
A CCUU
UUAGG
AGCUA
GUCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGUUGGAUCACNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus brevis ATCC 367 (CP000416)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.Lactobacillus brevis July 2012
UGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CA
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A G C U U C C
GUUGAAUGACGUGC
UUGCACUGAUUUCAACAA
UGAAGCGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGGA
AUC
UG
CCCAGAAG
CA G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AACAAAAUCCG
CAUGGAUUUUGUU
UG
AAAGGUGGCU
UC
G G C U A U C ACUUCUGG
AU
GA
UCCCGCGGC
GUA
UU
AG
UUA
GUU
GG
UG
AGG
UAAAG
G CC
CA
CC
AA
GA
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA U
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AA
AGAAGAAC
ACC
UU
UG
AG
AGUA
A C UG
UU
CA
AG
GG UUGAC G G
UAU
UU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A G U G C A U C G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
AGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCCAAUCUUAGAG
A U A A G A C G U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUU G
CG
A A GU
CG U
GA
GG
CU
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGAUA
A CCU
U CGGG
AGUCA
GCCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus fructivorans (X76330)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUNNUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CA
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A G C U G C
GCCUAAUGAUAGUUGAUGC
UUGCAUUAGCUUGACUUAAGUU
AGCAGCGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGAU A
ACC
UG
CCCAGAAG
A A G G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGUAUA
AC
AACGAAAACCA
CAUGGUUUUCGUU
UG
AAAGAUGGCCU
UU G
UG C U A U C G
CUUUUGG
AU
GG
AUCCGCGGC
GCA
UU
AG
CUA
GUU
GG
UG
AGA
UAAAG
G CU
CA
CC
AA
GG
CAAU G A
UG
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA U
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
GGG
CG
UG
AG
AGUA
A C UG
CU
CA
CG
UC GCGAC G G
UAU
CU
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUCUUCU
AAGUCUGAUGUG
AAA
CGCUUCGGCU
UA A C C G G A G A A G U G C A U C G G A
AAC U G G G A A A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
AGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G A C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
UGCUAC G C
GA
AGAA
C C U UA
CCAGGACU
UGA
CA
UC
UU
CU
GCCAAUCUAAGAG
A U U A G A C G U UC
CU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C A U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUU G
CG
A A AC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGU
UG
GAAUCGC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGUCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
UAGGUA
A CCU
U UUGG
AGCCU
GCCGCCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUNU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus lindneri (X95421)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUNNUGGCUCAG
GA
CGA
AC
GU
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A G G U C U C
CUAACUGAUAGCUGGUGC
UUGCAUCAGCUUGACGAUAGA
UC
UGACCGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAGAAG
A A G G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGUAUA
AC
AACGAGAACCA
CAUGGUUCUCGUU
UG
AAAGAUGGCUU
UU AUG C U A U C G
CUUCUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGA
UAAUA
G CU
CA
CC
AA
GG
CAAU G A
UA
CG
UA
GCAGACCUG
AG A
GGGUA A
UC U GC C
AC
AAUGGGA
CUGA
GA
C A C GG C C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
GAC
CG
UG
AG
AGCA
A C UG
CU
CA
CG
GU GUGAC G G
UAU
CU
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
AC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUCU
AAGUCUGAUGUG
AAA
CGCUUCGGCU
UA A C C G G A G A A G U G C A U C G G A
AAC U G G A U A A C
UU
GAGUGCAGAA
AA
GGACAGU
GGAACUUCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G A A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGCAUCU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U G C U A GG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G A C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
UGCUAC G C
GA
AGAA
C C U UA
CCAGGACU
UGA
CA
UC
UU
CU
GUUAACCUAAGAG
A U U A G G U G UC
CU
U CGGGGG
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C U U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAGAGA
G
A
CUGCCGGUG
AUAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGUCCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUU G
CG
A A AC
CG C
AA
GG
UC
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGU
UG
GAAUCGC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGUCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
UGGAUA
A CCU
U U ACGG
AGUCC
GCCGCCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUNU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus rapi (AB366389)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C G U C U U G
GUUAAAGAUUUUAGGUGC
UUGCAUUUAAAUGAUUUAACA
UUGAGACGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGU A
ACCU
GC
CCUUGAAG
UA G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AACUCAAACCA
CAUGGUUUGAGUU
UG
AAAGAUGGCU
UC
G G C U G U C ACUUUAGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUU
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AUGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
GG
AGAAGAAC
AGG
UG
UG
AG
AGUA
A C UG
UU
CA
CA
UC UUGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AGGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G G A G A A G U G C A U C G G A
AAC C G G G A G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
UGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCCAACCUAAGAG
A U U A G G C G U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U G U U A G
U U GC C
A GC A U U
UA
GUUGGGCACU
CUAGCAA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CG
A A AC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
UG
GAAUCGC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCU
U CGGG
AACCA
ACCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus plantarum(FJ386491)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
AUUAAUUUGAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A C U C U
GGUAUUGAUUGGUGC
UUGCAUCAUGAUUUACAU
UU
GAGUGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGA A
ACC
UG
CCCAGAAG
CG G G GG
A U AA C A C C U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AACUUGGACCG
CAUGGUCCGAGCU
UG
AAAGAUGGCU
UC
G G C U A U C ACUUUUGG
AU
GG
UCCCGCGGC
GUA
UU
AG
CUA
GAU
GG
UG
GGG
UAACG
G CU
CA
CC
AU
GG
CAAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AA
AGAAGAAC
AUA
UC
UG
AG
AGUA
A C UG
UU
CA
GG
UA UUGAC G G
UAU
UU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
CA A C C G A A G A A G U G C A U C G G A
AAC U G G G A A A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GUAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUAC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG G C C G
CA
AGGCUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UA
CU
AU
GCAAAUCUAAGAG
A U U A G A C G U UCCCU
U CGGGGA
CA
UG
G AU
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GUU G
CG
A A CU
CG C
GA
GA
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
AU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
GGGGUA
A CCUU U U
AGG
AACCA
GCCGCCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’ Lactobacillus farciminis(AJ417499)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUYMUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CA
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A C C A U C
CUGAAGAUUGAAGC
UUGCUUCAUGAUUCAGAC
CU
UGGUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAAAAG
UG G G GG
A U AA C A U U U G G
AA
ACAAGUGCU
AAUA
CCGCAUA
AC
AACUACUUUCA
CAUGAUCGUAGCU
UG
AAAGAUGGCU
CU G C U A U C G
CUUUUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAAUA
G CU
CA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
AA
A G C C U G A U G G A GCAA U
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
GA
AGAAGAAC
AUG
CG
UG
AG
AGUA
A C UG
UU
CA
CG
UA CUGAC G G
UAU
UC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGA
GAAUG
U
AGGCGGUUUAUU
AAGUUUGAAGUG
AAA
GCCCUCGGCU
CA A C C G A G G A A G U G C U U C G A A
AAC U G G U A A A C
UU
GAGUGCAGAA
GA
GGAAAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUUUCU
GGUCUGUAACU
GAC
GCU
G
AGA UUC G
AA
A GCAUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A U C G
CA
AGAUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UA
CC
AU
GACAAACUAAGAG
A U U A G U C U U UCCCU
U CGGGGA
CA
UG
G AU
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UC
GG
UAC
A A C GU
GUU G
CG
A A CU
CG C
GA
GG
GC
AAG
CA
AAU
CA
CU
UAAAA
CC
GA
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
GGGGUA
A CCCU
U CGGGG
AACUA
GCCGCCUAA
GGUGGGACAAAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUNUG
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus malefermentans(AM113783)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NNG A G U U
U GAUUCUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C A U C C C
GUUGAUUUGAAGUGC
UUGCACUGAUAAUUAACA
UC
GGAUGAGUGGC
GA
ACUGG
UG
AGU
AACA
CGUGGGU A
ACU
UG
CCCAAAAG
UA G G GG
A U AA C A U U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AACGAAAAUCG
CAUGAUUUUCGUU
UG
AAAGAUGGUU
UC
G G C U A U C ACUUUUGG
AU
AG
ACCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
GAG
UAAUG
G UU
UA
CC
AA
GG
CAAU G A
UG
CA
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
GG
AGAAGAAC
GAA
CG
UG
AG
AGUA
A C UG
UU
CA
CG
UU GUGAC G G
UAU
CC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGA
GAGUG
C
AGGCGGUUUGUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
CA A C C G A A G A A G U G C A U U G G A
AAC U G A U A A A C
UU
GAGUGCAGAA
AA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGUAACU
GAC
GCU
G
AGA CUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
CU
GCCAACCUAAGAG
A U U A G G C G U UCCCU
U CGGGGA
CA
GA
A UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
AUAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CG
A A CU
CG C
GA
GG
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGU
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
UCGGUA
A CCU
U CGGG
AGCCA
GCCGCCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’ Lactobacillus versmoldensis(AJ496791)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUNNUGGCUCUG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
G C G A A C U C U G
GUAACUGAUUUUUGAUGC
UUGCAUCAAAAUGAAGAUACAU
UU
GAGUGAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCUAAAG
UG G G GG
A U AA C A U C U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
AC
AACAACUUCCA
CAUGGAGGAUGUU
UG
AAAGAUGGUU
CU G C U A U C G
CUUUAGG
AU
GG
ACCCGCGGC
GUA
UU
AG
UUA
GUU
GG
UG
AGG
UAAAG
G CU
CA
CC
AA
GA
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
GA
AGAAGAAC
AUG
CG
UG
AG
AGUA
A C UG
UU
CA
UG
UA UUGAC G G
UAU
UC
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUUAUU
AGGUCUGAUGUG
AAA
GCCCUCGGCU
CA A C C G A G G A A G U G C A U C G G A
AAC C G G U A A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UA
CC
AU
GAAAAGCUAAGAG
A U U A G U C U U UCCCU
U CGGGGA
CA
UG
G AU
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UC
GG
UAC
A A C GU
GUU G
CG
A A CU
CG C
GA
GG
GC
AAG
CA
AAU
CA
CU
UAAAA
CC
GA
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GGGGUA
A CCUU U U
AGG
AGCUA
GCCGUCUAA
GGUGGGACAAAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUCUA
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus reuteri(AP007281)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus June 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
UGA
AC
GC
C
GGC
GG
UG
UG
CC
UAAU
ACAUGC
A
A
G U CG U
A C G C A C U G GC
CCAACUGAUUGAUGGUGC
UUGCACCUGAUUGACGAUGGAUC
ACCAGUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUAGGU A
ACC
UG
CCCCGGAG
CG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AACAAAAGCCA
CAUGGCUUUUGUU
UG
AAAGAUGGCU
UU
G G C U A U C ACUCUGGG
AU
GG
ACCUGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAAUG
G CU
UA
CC
AA
GG
CGAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AAUGGAA
CUGA
GA
C A C GG U C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
CA
A G C C U G A U G G A GCAA C
AC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
G C U CU
GU
UG
UU
GG
AGAAGAAC
GUG
CG
UG
AG
AGUA
A C UG
UU
CA
CG
CA GUGAC G G
UAU
CC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUGCUU
AGGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A A G U G C A U C G G A
AAC C G G G C G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
GAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
GC
GCUAACCUUAGAG
A U A A G G C G U UCCCU
U CAGGGA
CG
CA
A UG
AC A
GG
U GGUGC
A UG
GUCGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U A C U A G
U U GC C
A GC A U U
GA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AGAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CA
A A CU
CG C
GA
GA
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGG
GAGUUUGUAACGCC
CAAA
GUCGGU
GGCCUA
A CCU
UU AUGG
AGGGA
GCCGCCUAA
GGCGGGACAGAUGA
CUGGGGUGA
AGU
CGU
AAC
A AG
G
U A N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus mucosae (AF126738)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
UGA
AC
GC
C
GGC
GG
UG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C G U U G G C
CCAACUGAUUGAACGUGC
UUGCACGGACUUGACGUUGGUU
UA
CCAGCGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUAGGU A
ACC
UG
CCCCAAAG
CG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AAUUUGAAUCG
CAUGAUUCAAAUU
UA
AAAGAUGGCU
UC
G G C U A U C ACUUUGGG
AU
GG
ACCUGCGGC
GCA
UU
AG
CUU
GUU
GG
UA
GGG
UAACG
G CC
UA
CC
AA
GG
CUGU G A
UG
CG
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AAUGGAA
CUGA
GA
C A C GG U C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
CA
A G C C U G A U G G A GCAA C
AC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
G C U CU
GU
UG
UU
AG
AGAAGAAC
GUG
CG
UG
AG
AGCA
A C UG
UU
CA
CG
CA GUGAC G G
UAU
CU
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUGAU
AAGUCUGAUGUG
AAA
GCCUUUGGCU
UA A C C A A A G A A G U G C A U C G G A
AAC U G U C A G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
GC
GCCAACCCUAGAG
A U A G G G C G U UUCCU
U CGGGAA
CG
CA
A UG
AC A
GG
U GGUGC
A UG
GUCGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U A C U A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AGAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUC G
CG
A A CU
CG C
GA
GG
GC
AAG
CU
AAU
CU
CU
UAAAA
CC
GU
UCUCA
GU
UCGGACUGCAGGC
UGC
AACUCGCCUGCAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGCAACACC
CAAA
GUCGGU
GGGGUA
A CCCU
U CGGGG
AGCUA
GCCGCCUAA
GGUGGGGCAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus pontis (X76329)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
NAG A G U U
U GAUNNUGGCUCAG
GA
UGA
AC
GC
C
GGC
GG
UG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
G C G C A C U G G C
CCAACUGAUAUGACGUGC
UUGCACUGAUUUGACGAUGGAU
UA
CCAGUGAGCGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGC A
ACC
UG
CCCUGGAG
CG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AU
AAUCAAAACCA
CAUGGUUUUGAUU
UC
AAAGAUGGCU
UC
G G C U A U C ACUCCAGG
AU
GG
GCCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CGAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AAUGGAA
CUGA
GA
C A C GG U C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
CA
A G C C U G A U G G A GCAA C
AC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
GA
AGAAGAAC
GUG
CG
UG
AG
AGUA
A C UG
UU
CA
CG
CA GUGAC G G
UAU
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUACUU
AAGUCUGAUGUG
AAA
CGCUUCGGCU
UA A C C G A A G A A G U G C A U C G G A
AAC U G G G U G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGAU
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGCAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CC G
GAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCUAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UU
GC
GCUAACCUAAGAG
A U U A G G C G U UCCCU
U CGGGGA
CG
CA
A UG
AC A
GG
U GGUGC
A UG
GUCGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U A C U A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AGAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UC
GG
UAC
A A C GA
GUC G
CU
A A CC
CG C
GA
GG
GC
AAG
CU
AAU
CU
CU
UAAAG
CC
GA
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGG
AAGUUUGUAACGCC
CAAA
GUCGGU
GGCCUA
A CCA
U UUGG
AGGGA
GCCGCCUAA
GGCGGGACAGAUGA
CUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUUNU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactobacillus suebicus (AJ575744)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus July 2012
UUAAG A G U U
U GAUUAUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
UG
UG
CC
UAAU
ACAUGC
A
A
G U CG U
A C G C A U U C U C
GUUUCUGAUUGACGGUGC
UUGCACCUAAUUGACGAGACA
UUGGAAUGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAGAAG
UG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AA
AGUCAAAACCA
CAUGGUUUUGAUU
UA
AAAGAUGGCCU
UUGU G C U A U C A
CUUCUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CAAU G A
UA
CG
UA
GCCGAACUG
AG A
GGU UG A
UC GGC C
AC
AAUGGGA
CUGA
GA
C A C GG C C C A U
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGGCG
CA
A G C C U G A U G G A GCAA C
AC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UG
UU
AA
AGAAGAAC
GUA
UC
UA
AG
AGUA
A C UG
CU
UA
GG
UA GUGAC G G
UAU
UU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A A G U G C A U C G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGACAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUGUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A A U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCAUUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GC
GCCAAUCUCAGAG
A U G A G A C G U UCCCU
U CGGGGA
CG
CU
A AG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AC
GG
UAC
A A C GA
GUU G
CG
A A CU
CG C
GA
GG
GU
AAG
CU
AAU
CU
CU
UAAAG
CC
GU
UCUCA
GU
UCGGACUGUAGGC
UGC
AACUCGCCUACAC
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GUCGGU
GGGGUA
A CCUU U U
AGG
AGCCA
GCCGCCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G G AGA
ACCUGCGGCUGGAUCACCUCCUUU
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured bacterium (AM500777)1.cellular organisms 2.Bacteria 3.environmental samples 4.uncultured bacterium July 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G AA
CG
AG
UU
UG
CU
UU
UA
AU
GA
AG
AC
GG
UG
CU
UGC
AC
CA
AC
UG
AU
UU
AA
AA
AU
AA
AC
GA
GUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCUAAAG
UG G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AU
AUUAAAAACCA
CAUGGUUUUUAAU
UG
AAAGACGGCG
UA
A G C U G U C ACUUUUGG
AU
GG
ACCCGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
UA
CC
AA
GG
CGAU G A
UA
CG
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UA
UU
GG
AGAAGAAC
GUA
UU
UG
GU
AGUA
A C UG
GC
CA
GA
UA GUGAC G G
UAU
CC
AA
UC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUGG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUUUUU
AAGUCUGAUGUG
AAA
GCCUUCGGCU
UA A C C G A A G A C A U G C A U U G G A
AAC U G G G A A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
UA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GC
GCCAAUCCUAGAG
A U A G G A C G U UCCCC
U CGGGGA
CG
CU
A AG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U C A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUGGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
CU
AG
UAC
A A C GA
GUU G
CG
A GAC
CG C
GA
GG
UC
AAG
CU
AAU
CU
CU
AAAAG
CU
AG
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CGAA
GCCGGU
GGAGUA
A CCCG
U AAGGG
AGCUA
GCCGUCUAA
GGUGGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured bacterium (AM500848)1.cellular organisms 2.Bacteria 3.environmental samples 4.uncultured bacterium July 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U C G AA
CG
AG
UU
CU
GG
UU
AA
GA
GU
GG
CG
GU
GCU
UGC
AC
CA
AA
GC
GA
UU
AA
CAAU
GG
AA
CG
AG
UGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCUAUAG
CA G G GG
A U AA C A U U U G G
AA
ACAGAUGCU
AAUA
CCGCAUA
AC
AACAACUAUCA
CAUGAUAGAUGUU
UG
AAAGAUGGCG
AA
A G C U A U C ACUAAAGG
AU
GG
ACCUGCGGC
GUA
UU
AG
UUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GA
CGAU G A
UA
CG
UA
GCCGACUUG
AG A
GA GUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
AA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGGUUUC
G G C U CGU A A A
A C U CU
GU
UA
UU
GG
AGAAGAAG
GAU
AA
GG
UA
AGCA
A C UG
UA
CU
UU
A U UUGAC G G
UAA
CC
AA
UC
AG
AA
AGUCACAGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAAUU
AU
U G GGC
GUAA
AGC
GAGUG
C
AGGCGGUUGUAU
AAGUCUGAUGUG
AAA
GCCCUCGGCU
CA A C C G A G G A A U U G C A U C A G A
AAC U G U A U A A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
GAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GC
GCCAAUCCCAGAG
A U G G G A C G U UUCCU
U CGGGAA
CG
CU
A AG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A C U A G
U U GC C
A GC A U U
AA
GAUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GC
GG
UAC
A A C GA
GUU G
CG
A A CU
UG U
GA
AA
GU
AAG
CG
AAU
CU
CU
AAAAA
CC
GU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
UG
GAAUCGC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAACACC
CAAA
GCCGGU
GAGGUA
A CCAU
U AAUGG
AGCCA
GCCGUCUAA
GGUGGGAUAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured Lactobacillus sp.(HM046576)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.environmental samples June 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GC GGGA A GU C A GGGA A GC C UU
CGGGUGGAACUGGUGGAACGAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUAGGU A
ACC
UG
CCCUAAAG
CG G G GG
A U AC C A U C U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
AA
CCCAGCAGUCA
CAUGAGUGCUGGU
UG
AAAGACGGCU
UC
G G C U G U C ACUUUAGG
AU
GG
ACCUGCGGC
GUA
UU
AG
CUA
GUU
GG
UG
GAG
UAACG
G UU
CA
CC
AA
GG
CAAC G A
UA
CG
UA
GCCGACCUG
AG A
GGGUA A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGGAUG
AAGAA
GGUCUUC
G G A U CGU A A A
A U C CU
GU
UG
UU
GA
AGAAGAAC
GGU
UG
UG
AG
AGUA
A C UG
CU
CA
UA
GC GUGAC G G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGG
GAGCG
C
AGGCGGUCUUUU
AAGUCUG
AAUGUG
AAA
GCCCUCAGCU
UA A C U G A G G A A G A G C A U C G G A
AAC U G A G A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUUACU
GAC
GCU
G
AGGCUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CC
CU
GCAAGCCUAAGAG
A U U A G G G G U UCCCU
U CGGGGA
CA
GG
A AG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U U A C U A G
U U GC C
A GC A U U
GA
GUUGGGCACU
CUAGUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A U GA
GAA G
CG
A A CU
CG C
GA
GG
GG
AAG
CU
GAU
CU
CU
GAAAA
CC
AU
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUCUGUAAUACC
CAAA
GCCGGU
AAGAUA
A CCUG
C AAAGG
AGUCA
GCCGUCUAA
GGUAGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured Lactobacillus sp.(HM046568)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.environmental samples June 2012
NAG A G U U
U GAUCCUGACUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GA GC A A A GU U A A A GGA A U A C UU
CGGUAGGAAUUUAAUAGCGCGAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGC A
AUC
UA
CCCUUUAG
CU U G GG
A U AC C A C U U G G
AA
ACAGGUGCU
AAUA
CCAAAUA
AG
AAGUAAGAGCG
CAUGCUCAAGCUA
UG
AAAGGCGGCUU
UC
G A G C U G U C ACUAAAGG
AU
GA
GCCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CU
UA
CC
AA
GG
CAAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
GG
UGAGGAAG
GAC
AU
GG
AU
AGUA
A C UG
AU
CU
AU
GU UUGAC G G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAACG
C
AGGCGGGAGAAC
AAGUCAGCUGUG
AAA
GCCCUCGGCU
UA A C C G A G G A A C G G C A A C U G A
AAC U G U U U U U C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUAAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAGC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GU
GCCAACCCUAGAG
A U A G G G U G U UUCCU
U CGGGAA
CA
CU
A AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UU
AG
UAC
A A C GA
GGA G
CG
A A CC
UG U
GA
AG
GC
AAG
CG
AAU
CU
CU
UAAAG
CU
AA
UCUCA
GU
UCGGAUUGCACUC
UGC
AACUCGAGUGCAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUUUGUAAUACC
CAAA
GCCGGU
GAGAUA
A CCUG
U AAAGG
AGUCA
GCCGUCUAA
GGUAGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
uncultured Lactobacillus sp.(AY370183)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Lactobacillaceae 7.Lactobacillus 8.environmental samples June 2012
GAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
GC GA GC A A U U U U A A U GGA A U A C UU
CGGUAGGAAGUUAAGAGCGCGAGCGGC
GG
AUGGG
UG
AGU
AACA
CGUGGGC A
ACC
UG
CCCUUUAG
CU U G GG
A U AC C A C U U G G
AA
ACAGGUGCU
AAUA
CCAAAUA
AG
AAGCGAGAGCG
CAUGCUCAAGCAG
UA
AAAGGCGGCUU
UC
G A G C U G U C ACUAAAGG
AU
GG
GCCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
AGG
UAACG
G CC
UA
CC
AA
GG
CGAU G A
UG
CA
UA
GCCGAGUUG
AG A
GA C UG A
CC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCA
CAAUGGACG
CA
A G U C U G A U G G A GCAA U
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
G C U CU
GU
UG
UU
GG
UGAAGAAG
GAC
AA
GG
GU
AGUA
A C UG
AU
CU
UU
GU UUGAC G G
UAA
UC
AA
CC
AG
AA
AGUCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAACG
C
AGGCGGGAAGAU
AAGUCAGCUGUG
AAA
GCCCCCAGCU
UA A C U G G G G A A C U G C A G C U G A
AAC U A U G U U U C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAACUCCAUGUGUA
GCGGUGG
A A U G CG
UA G
AUA U A U G G A A G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGUUC G
AA
A GCAUGGG
UA G
CGAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCAUGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
GA
GGU U U
CC
GCC
UC
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUAAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
UA
GU
GCCAGUCCUAGAG
A U A G G A U G U UUCCU
U CGGGAA
CA
CU
A AG
AC A
GG
U GGUGC
A UG
GCUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U A U U A G
U U GC C
A GC A U U
AA
GUUGGGCACU
CUAAUGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
CGA
CGUC
AAGUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
UU
AG
UAC
A A C GA
GCA G
CG
A A CC
UG C
AA
AG
GC
AAG
CG
AAU
CU
CU
GAAAG
CU
AA
UCUCA
GU
UCGGAUUGCACUC
UGC
AACUCGAGUGCAU
GAAGC
UG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCAUGA
GAGUCUGUAAUGCC
CAAA
GCCGGU
GGGAUA
A CCUG
C AAAGG
AGUCA
GCCGUCUAA
GGCAGGACAGAUGA
UUAGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A G N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Bacillus coagulans (AF466695)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Bacillales 6.Bacillaceae 7.Bacillus June 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG U
G C G G A C C U U U U A A A A G CUU
GCUUUUAAAAGGUUAGCGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGC A
ACC
UG
CCUGUAAG
A U C G GG
A U AA C G C C G G G
AA
ACCGGGGCU
AAUA
CCGGAUA
GU
UUUUUCCUCCG
CAUGGAGGAAAAA
GG
AAAGACGGCU
UC
G G C U G U C ACUUACAG
AU
GG
GCCCGCGGC
GCA
UU
AG
CUU
GUU
GG
UG
GGG
UAACG
G CU
CA
CC
AA
GG
CAAC G A
UG
CG
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCG
CAAUGGACG
AA
A G U C U G A C G G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGCCUUC
G G G U CGU A A A
A C U CU
GU
UG
CC
GG
GGAAGAAC
AAG
UG
CC
GU
UCGAA C A
GG
GC
GG
CG
CC UUGAC G G
UAC
CC
GG
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAAUU
AU
U G GGC
GUAA
AGC
GCGCG
C
AGGCGGCUUCUU
AAGUCUGAUGUG
AAA
UCUUGCGGCU
CA A C C G C A A G C G G U C A U U G G A
AAC U G G G A G G C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAAUUCCACGUGUA
GCGGUGA
A A U G CG
UA G
AGA U G U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCGC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
AG
AG
GGU U U
CC
GCC
CU
UU
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG G C C G
CA
AGGCUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
CU
GACCUCCCUGGAG
A C A G G G C C U UCCCCU
U CGGGGGA
CA
GA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G A C C U U A G
U U GC C
A GC A U U
CA
GUUGGGCACU
CUAAGGU
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A A GG
GCU G
CG
A GAC
CG C
GA
GG
UU
AAG
CC
AAU
CC
CA
GAAAA
CC
AU
UCCCA
GU
UCGGAUUGCAGGC
UGC
AACCCGCCUGCAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCAUG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGA
GAGUUUGUAACACC
CGAA
GUCGGU
GAGGUA
A CC
UU U A
CGG
AGCCA
GCCGCCGAA
GGUGGGACAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Clostridium aff. innocuum CM970 (AF028352)1.cellular organisms 2.Bacteria 3.Tenericutes 4.Mollicutes 5.unclassified Mollicutes June 2012
NNN A G U U
U GAUCCUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CA
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A G U C U CA A
G G A G CUU
GCUCCAAA
GAGACUUAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUAGGU A
ACC
UG
CCCAUGUG
UC C G GG
A U AA C U G C U G G
AA
ACGGUAGCU
AAAA
CCGGAUA
GG
UAUACAGAGCG
CAUGCUCAGUAUA
UU
AAAGCGCCCA
UC
A A G G C G U GAACAUGG
AU
GG
ACCUGCGGC
GCA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CC
CA
CC
AA
GG
CGAU G A
UG
CG
UA
GCCGGCCUG
AG A
GGGUA A
AC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUUU
UCGU
CAAUGGGGG
AA
A C C C U G A A C G A GCAA U
GC
CG
CGUGAGUG
AAGAA
GGUCUUC
G G A U CGU A A A
G C U CU
GU
UG
UA
AG
UGAAGAAC
GGC
UC
AU
AG
AGGA
A A UG
CU
AU
GG
GA GUGAC G G
UAG
CU
UA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UA
UC
CG
GAAUC
AU
U G GGC
GUAA
AGG
GUGCG
U
AGGUGGCGUACU
AAGUCUGUAGUA
AAA
GGCAAUGGCU
CA A C C A U U G U A A G C U A U G G A
AAC U G G U A U G C
UG
GAGUGCAGAA
GA
GGGCGAU
GGAAUUCCAUGUGUA
GCGGUAA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGUCGCCU
GGUCUGUAACU
GAC
A CU
G
AGGCA C G
AA
A GCGUGGG
GA G
CAAAUAGG
AUU
A G AUAC
CCUA
GUA
GU
CCACGC C G U
AAAC
GAU
G A G A A C U A AG
UG
UU
GG
AG G
AA
UU
CA
GU
GC
U GCAG
U UA
ACG
CAAUA
AGUUCUC
CGCCU
G G GG
A G U AUG C A C G
CA
AGUGUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGUAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGCCU
UGA
CA
UG
GA
AAC
AAAUACCCUAGAG
A U A G G G G G AUA
A UUAU
GG
AU
C AC
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G U C G C A U G
U U AC C
A GC A U C
AA
GUUGGGGACU
CAUGCGA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGGCCUGGGCU
AC
ACACGUACUAC A A U
GG
CG
AC
CAC
A A A GA
GCA G
CG
A C UU
GG U
GA
CA
AG
AAG
CG
AAU
CU
CA
UAAAG
GU
CG
UCUCA
GU
UCGGAUUGAAGUC
UGC
AACUCGACUUCAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCAGA U
CA
GCAUG
CU
GC
GG
UGA
AU
ACGU
UCU
CGGGCCUUGUA
CACACCGCCCG
UC
AAACCAUGG
GAGUCAGUAAUACC
CGAA
GCCGGU
GGCAUA
A CCG
U AGGG
AUGGA
GCCGUCGAA
GGUAGGACCGAUGA
CUGGGGUUA
AGU
CGU
AAC
A AG
G
U A A C C N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Enterococcus faecium (EF533987)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Enterococcaceae 7.Enterococcus June 2012
NAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C U U C U U U U U CC
A CCG G A G C
UU
GCUCCACCG
GAAAAAGAGGAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAUCAG
A A G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AAUCAAAACCG
CAUGGUUUUAAUU
UG
AAAGGCGCUU
UC
G G G U G U C GCUGAUGG
AU
GG
ACCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CCAC G A
UG
CA
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCGG
CAAUGGACG
AA
A G U C U G A C C G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
AAG
GA
UG
AG
AGUA
A C UG
UU
CA
UC
CC UUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUCUU
AAGUCUGAUGUG
AAA
GCCCCCGGCU
CA A C C G G G G A G G G U C A U U G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
CC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUCUAGAG
A U A G A G C U U CCCCU
U CGGGGG
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U G U U A G
U U GC C
A UC A U U
CA
GUUGGGCACU
CUAGCAA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GA
AG
UAC
A A C GA
GUC G
CG
A A GU
CG C
GA
GG
CU
AAG
CU
AAU
CU
CU
UAAAG
CU
UC
UCUCA
GU
UCGGAUUGCAGGC
UGC
AACUCGCCUGCAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGA
GAGUUUGUAACACC
CGAA
GUCGGU
GAGGUA
A CC
UU U U
UGG
AGCCA
GCCGCCUAA
GGUGGGAUAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Enterococcus hirae (NR_037082)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Enterococcaceae 7.Enterococcus June 2012
NNN N N N N
N NNNCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C U U C U U U U U CC
A CCG G A G C
UU
GCUCCA
CCGGAAAAAGAGGAGUGGC
GA
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UG
CCCAUCAG
A A G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGUAUA
AC
AAUCGAAACCG
CAUGGUUUUGAUU
UG
AAAGGCGCUU
UC
G G G U G U C GCUGAUGG
AU
GG
ACCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CGAC G A
UG
CA
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCGG
CAAUGGACG
AA
A G U C U G A C C G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
AAG
GA
UG
AG
AGUA
A C UG
UU
CA
UC
CC UUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUCUU
AAGUCUGAUGUG
AAA
GCCCCCGGCU
CA A C C G G G G A G G G U C A U U G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUCUAGAG
A U A G A G C U U CCCCU
U CGGGGG
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U G U U A G
U U GC C
A UC A U U
UA
GUUGGGCACU
CUAGCAA
G
A
CUGCCGGUG
ACAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GA
AG
UAC
A A C GA
GUC G
CA
A A GU
CG C
GA
GG
CU
AAG
CU
AAU
CU
CU
UAAAG
CU
UC
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGA
GAGUUUGUAACACC
CGAA
GUCGGU
GAGGUA
A CCU
U UUGG
AGCCA
GCCGCCUAA
GGUGGGAUAGAUGA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A U C GGA
AGGUGCGGCUGGAUCANNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Enterococcus moraviensis (NR_028794)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Enterococcaceae 7.Enterococcus June 2012
NNN N N N N
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G C U U C U U U U C UA
C CGA G U G C
UU
GCACUCAUU
UGAAAAGAGGAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGU A
ACC
UA
CCCAUCAG
A G G G GG
A U AA C A C U U G G
AA
ACAGGUGCU
AAUA
CCGCAUA
AU
AGUCGACACCG
CAUGGUGUUGAUU
UG
AAAGACGCUU
UC
G G G U G U C ACUGAUGG
AU
GG
ACCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CCAU G A
UG
CA
UA
GCCGACCUG
AG A
GGGUG
UC GGC C
AC
ACUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCGG
CAAUGGACG
AA
A G U C U G A C C G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
UU
AG
AGAAGAAC
AAG
UA
GG
AG
AGUA
A C UG
CU
CU
UA
CC UUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUCUU
AAGUCUGAUGUG
AAA
GCCCCCGGCU
CA A C C G G G G A G G G U C A U U G G A
AAC U G G G A G A C
UU
GAGUGCAGAA
GA
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGACUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUMC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
GG
AG
GGU U U
CC
GCC
CU
UC
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GACCACUCUAGAG
A U A G A G C U U UCCCU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U A U U G U U A G
U U GC C
A UC A U U
UA
GUUGGGCACU
CUAGCGA
G
A
CUGCCGGUG
ACAAACCGKAGGAAAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
GA
AG
UAC
A A C GA
GUC G
CU
A GGC
CG C
GA
GG
UC
AUG
CA
AAU
CU
CU
UAAAG
CU
UC
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCSSCCG
UC
ACACCACGA
AAGUUUGUAACACC
CGAA
GUCGGU
GAGGUA
A CC
CU U G
UGG
AGCCA
GCCGCCUAA
GGUGGGAUAGAUGA
UUGGGACGA
AGU
CGU
AAC
AC
N
N N N N N N N N N N NNN
NNNNNNNNNNNNNNNNNNNNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Lactococcus lactis subsp. lactis KF147 (NC_013656)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Streptococcaceae 7.Lactococcus 8.Lactococcus lactis 9.Lactococcus lactis subsp. lactis June 2012
GAG A G U U
U GAUCCUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U UG A
G C G C U GA A
G G U U G G U A CUU
GUACCGACUGG
AUGAGCAGC
GA
ACGGG
UG
AGU
AACG
CGUGGGGA
AUC
UG
CCUUUGAG
CG G G GG
A C AA C A U U U G G
AA
ACGAAUGCU
AAUA
CCGCAUA
AA
AACUUUAAACA
CAAGUUUUAAGUU
UG
AAAGAUGCA
AU
U G C A U C ACUCAAAG
AU
GA
UCCCGCGUU
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAAAG
G CU
CA
CC
AA
GG
CGAU G A
UA
CA
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
AUUGGGA
CUGA
GA
C A C GG C C C A A
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCGG
CAAUGGACG
AA
A G U C U G A C C G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
A C U CU
GU
UG
GU
AG
AGAAGAAC
GUU
GG
UG
AG
AGUGG A A
AG
CU
CA
UC
A A GUGAC G G
UAA
CU
AC
CC
AG
AA
AGGGACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUCCCGA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGUGGUUUAUU
AAGUCUGGUGUA
AAA
GGCAGUGGCU
CA A C C A U U G U A U G C A U U G G A
AAC U G G U A G A C
UU
GAGUGCAGGA
GA
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
GG
U GG C G
AA
AGCGGCUCUCU
GGCCUGUAACU
GAC
A CU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A GA
UG
UA
GG
GA
GCU A U
AAG
UU
CU
CU
GU
AU
C GCAG
C UA
ACG
CAAUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UA
CU
CGU
GCUAUUCCUAGAG
A U A G G A A G UUCCU
U CGGGACA
CG
GG A
UA
C AGG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C C U A U U G U U A G
U U GC C
A UC A U U
AA
GUUGGGCACU
CUAACGA
G
A
CUGCCGGUG
AUAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
GG
UAC
A A C GA
GUC G
CG
A GAC
AG U
GA
UG
UU
UAG
CU
AAU
CU
CU
UAAAA
CC
AU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGG
GAGUUGGGAGUACC
CGAA
GUAGGU
UGCCUA
A CCG
C AAGG
AGGGC
GCUUCCUAA
GGUAAGACCGAUGA
CUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A U C GGA
AGGUGCGGCUGGAUCACCUNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Listeria rocourtiae (FJ557241)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Bacillales 6.Listeriaceae 7.Listeria June 2012
NNG A G U U
U GAUCAUGGCUCAG
GA
CGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U CG A
A C G A A CC G
A C G A A A G A G CUU
GCUCUUUCUGAC
GUUAGUGGC
GG
ACGGG
UG
AGU
AACA
CGUGGGC A
ACC
UG
CCUGUAAG
UU G G GG
A U AA C U C C G G G
AA
ACCGGGGCU
AAUA
CCGAAUA
AU
AACAAGCGUCG
CAUGACGCCUGUU
UG
AAAGACGGUU
UC
G G C U G U C ACUUACAG
AU
GG
GCCCGCGGU
GCA
UU
AG
CUA
GUU
GG
UA
GGG
UAAUG
G CC
UA
CC
AA
GG
CGAC G A
UG
CA
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
ACUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCCG
CAAUGGACG
AA
A G U C U G A C G G A GCAA C
GC
CG
CGUGUGUG
AAGAA
GGUUUUC
G A A U CGU A A A
G C A CU
GU
UG
UU
AG
AGAAGAAC
AAG
GA
UA
AG
AGUA
A C UG
CU
UG
UC
CC UUGAC G G
UAU
CU
AA
CC
AG
AA
AGCCACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUGGCAA
GC
GU
UG
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUUCUU
AAGUCUGAUGUG
AAA
GCCCCCGGCU
UA A C C G G G G A G G G U C A U U G G A
AAC U G A G A G A C
UU
GAAUGCAGGA
GA
GGUAAGU
GGAAUUCCACGUGUA
GCGGUGA
A A U G CG
UA G
AUA U G U G G A G G A A C
AC C
AG
U GG C G
AA
GGCGGCUUACU
GGCCUGUAAUU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A AG
UG
UU
AG
GG
GGU U U
CC
GCC
CC
UU
AG
UG
CU G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GUGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CU
UU
GAACCUUCUGGAG
A C A G A A C U U UCCCU
U CGGGGA
CA
AA
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C U U G A U U U U A G
U U GC C
A GC A U U
UA
GUUGGGCACU
CUAAAGU
G
A
CUGCCGGUG
CAAGCCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
AU
AA
UAC
A A A GG
GUU G
CC
A A AC
CG C
GA
GG
UC
GAG
CU
AAU
CC
CA
UAAAA
UU
AU
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGC
CG
GAAUCAC
UAGUAAUCGUGGA U
CA
GCAUG
CC
AC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGA
GAGUUUGUAACACC
CGAA
GUCGGU
AGGGUA
A CC
UU U A
UGG
AGCCA
GCCGCCGAA
GGUGGGACAGAUAA
UUGGGGUGA
AGU
CGU
AAC
A AG
G
U A G C C G U A U C GGA
AGGUGCGGUUGGAUCACCUNNNNN
Citation and related information available at http://www.rna.ccbb.utexas.edu
Secondary Structure: small subunit ribosomal RNA
5’
3’
Streptococcus parasanguinis ATCC 15912 (NR_024842)1.cellular organisms 2.Bacteria 3.Firmicutes 4.Bacilli 5.Lactobacillales 6.Streptococcaceae 7.Streptococcus 8.Streptococcus parasanguinis June 2012
NNN N N N U
U GAUCCUGGCUCAG
GA
UGA
AC
GC
U
GGC
GG
CG
UG
CC
UAAU
ACAUGC
A
A
G U AG A
A C G C U GA A
G C U U G G U G CUU
GCACCGAGCGG
AGGAGUUGC
GA
ACGGG
UG
AGU
AACG
CGUAGGU A
ACC
UG
CCUCUUAG
CG G G GG
A U AA C U A U U G G
AA
ACGAUAGCU
AAUA
CCGCAUA
AA
AGUCGACAUUG
CAUGAUGUUGACU
UG
AAAGGUGCA
AA
U G C A U C ACUAAGAG
AU
GG
ACCUGCGUU
GUA
UU
AG
CUA
GUU
GG
UG
AGG
UAACG
G CU
CA
CC
AA
GG
CGAC G A
UM
CA
UA
GCCGACCUG
AG A
GGGUG A
UC GGC C
AC
ACUGGGA
CUGA
GA
C A C GG C C C A G
AC
UC
CUA
C GG
GA
GG C A G
CAGUA
GGGAAUCU
UCGG
CAAUGGACG
GA
A G U C U G A C C G A GCAA C
GC
CG
CGUGAGUG
AAGAA
GGUUUUC
G G A U CGU A A A
G C U CU
GU
UG
UA
AG
AGAAGAAC
GAG
UG
UG
AG
AGUGGA A
AG
UU
CA
CA
CU GUGAC G G
UAA
CU
UA
CC
AG
AA
AGGGACGGC
U A ACUACG
UGCCA
GC
AG C C
GC G
GUAA
UAC
GUAG
GUCCCGA
GC
GU
UR
UC
CG
GAUUU
AU
U G GGC
GUAA
AGC
GAGCG
C
AGGCGGUUAGAU
AAGUCUGAAGUU
AAA
GGCUGUGGCU
UA A C C A U A G U A C G C U U U G G A
AAC U G U U U A A C
UU
GAGUGCAGAA
GG
GGAGAGU
GGAAUUCCAUGUGUA
GCGGUGA
A A U G CG
UA G
AUA U A U G G A G G A A C
AC C
GG
U GG C G
AA
AGCGGCUCUCU
GGUCUGUAACU
GAC
GCU
G
AGGCUC G
AA
A GCGUGGG
GA G
CAAACAGG
AUU
A G AUAC
CCUG
GUA
GU
CCACGC C G U
AAAC
GAU
G A G U G C U A GG
UG
UU
GG
GU
CCU U U
CC
GGG
AC
UC
AG
UG
CC G
CAG
C UA
ACG
CAUUA
AGCACUC
CGCCU
G G GG
A G U ACG A C C G
CA
AGGUUGAAA
CUCA
AAG G A A U U G A C G
GG G G C C C G
CA C A A GCGGU
GGAGCAUGUGGUU
UAAU
UC
GA
AGCAAC G C
GA
AGAA
C C U UA
CCAGGUCU
UGA
CA
UC
CC
UCU
GACCGCUCUAGAG
A U A G A G C U UUCCU
U CGGGAC
AG
AG
G UG
AC A
GG
U GGUGC
A UG
GUUGUCG
UCA
GCUCGUGUCG
UGAGAU
GU
UGGG
UU
A AGU
CCCG C
AA C G A G C
GC A A
CC C C U A U U G U U A G
U U GC C
A UC A U U
UA
GUUGGGCACU
CUAGCGA
G
A
CUGCCGGUA
AUAAACCGGAGG
AAGGUGGGGA
UGA
CGUC
AAAUC
AUC
A
UGCCCC U
UA
UGACCUGGGCU
AC
ACACGUGCUAC A A U
GG
CU
GG
UAC
A A C GA
GUC G
CG
A GUC
GG U
GA
CG
GC
AAG
CU
AAU
CU
CU
UAAAG
CC
AG
UCUCA
GU
UCGGAUUGUAGGC
UGC
AACUCGCCUACAU
GAAGU
CG
GAAUCGC
UAGUAAUCGCGGA U
CA
GCACG
CC
GC
GG
UGA
AU
ACGU
UCC
CGGGCCUUGUA
CACACCGCCCG
UC
ACACCACGA
GAGUUUGUAACACC
CGAA
GUCGGU
GAGGUA
A CCU
U UUGG
AGCCA
GCCGCCUAA
GGUGGGAUAGAUGA
UUGGGGUGA
AGU
CGU
AAC
AA
G
U A G C C G U A U C GGA
AGNNNNNNNNNNNNNNNNNNNNNN
0.3
L. delbrueckii (acidophilus)
L. salivariusL. reuteri
L. sakei
L. plantarum
L. buchneri
L. c
asei
Host:
Corbiculate apidMycocepurus smithiiSolenopsis halictid
F i g . S1. 16S rDNA maximum-likelihood tree of the genus Lactobacillus, based on partial sequences. Branch widths are proportional to bootstrap support from 100 pseudoreplicates. Highlighted edges represent Hymenoptera-associated lactobacilli as indicated in the legend. Major clades are indicated with curved lines and named according to previous studies (54-57).
0.00.100.200.300.400.500.600.700.800.901.01.10
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001.001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001.001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001.00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0.510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.310.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
0.00.100.200.300.400.500.600.700.800.901.01.101.201.301.401.50
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001.001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001. 001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001.00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0. 510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.3 10.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.001.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.0 01.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380.380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860.861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750.75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0.990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910 .910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.001.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.2 6
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0.500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990 .990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250.250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960.960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360.36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.0 01.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.130.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.000.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.0 70.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001.001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0. 060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961.001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690 .690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110 .110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050.05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0. 140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350.35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570.570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960. 960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0.380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040. 040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0.050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050. 050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0.000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030. 030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
Fig. S2 A. Detailed version of Fig. 2, tree based on partial and complete sequences combined. Values at nodes represent bootstrap support, while taxa are color coded as clades or host as in legend at the left.
0.00.100.200.300.400.500.600.700.800.901.01.10
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.001.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.001.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380.380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860.861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750.75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0.990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910.910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.001.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.26
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0.500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.00.100.200.300.400.500.600.700.800.901.01.101.201.301.401.50
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001. 001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001.001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001. 00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0.510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.310.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.0 01.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.001.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380 .380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860 .861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750 .75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0 .990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910.910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.0 01.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.26
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0 .500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990.990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250 .250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960 .960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360 .36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.001.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.1 30.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.0 00.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.070.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001 .001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0.060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961. 001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690.690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110.110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050. 05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0.140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350. 35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570. 570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960.960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0. 380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040.040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0. 050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050.050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0. 000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030.030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
Firm3
Firm4
Fig. S2 B.
0.00.100.200.300.400.500.600.700.800.901.0
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990.990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250.250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960.960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360.36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.001.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.130.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.000.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.070.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
0.010.010.010.010.01
0.010.010.010.010.01
Lactobacillus kunkeei clade
0.00.100.200.300.400.500.600.700.800.901.01.101.201.301.401.50
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001. 001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001.001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001. 00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0.510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.310.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.0 01.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.001.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380 .380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860 .861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750 .75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0 .990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910.910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.0 01.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.26
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0 .500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990.990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250 .250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960 .960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360 .36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.001.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.1 30.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.0 00.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.070.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001 .001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0.060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961. 001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690.690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110.110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050. 05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0.140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350. 35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570. 570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960.960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0. 380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040.040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0. 050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050.050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0. 000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030.030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
Fig. S2 C.
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001.001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0.060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961.001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690.690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110.110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
0.050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050.050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0.000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030.030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.00.100.200.300.400.500.600.700.800.901.01.101.201.30
0.00.100.200.300.400.500.600.700.800.901.01.101.201.301.401.50
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001. 001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001.001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001. 00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0.510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.310.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.0 01.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.001.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380 .380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860 .861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750 .75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0 .990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910.910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.0 01.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.26
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0 .500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990.990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250 .250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960 .960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360 .36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.001.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.1 30.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.0 00.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.070.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001 .001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0.060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961. 001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690.690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110.110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050. 05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0.140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350. 35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570. 570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960.960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0. 380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040.040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0. 050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050.050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0. 000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030.030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
Fig. S2 D.
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050.05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0.140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350.35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570.570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960.960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0.380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040.040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0.00.100.200.300.400.500.600.700.800.901.0
0.00.100.200.300.400.500.600.700.800.901.01.101.201.301.401.50
Carnobacterium_divergens_NR_044706_280Carnobacterium_maltaromaticum_NR_044710_281
0.720.720.720.720.72
Abiotrophia_defectiva_ATCC_49176_NR_025863_284Eremococcus_coleocola_NR_026481_287
1.001.001.001.001.000.970.970.970.970.97
Listeria_rocourtiae_FJ557241_056Bacillus_thuringiensis_str._Al_Hakam_CP000485_ag_069
Bacillus_coagulans_AF466695_2780.970.970.970.970.970.990.990.990.990.99
Enterococcus_moraviensis_NR_028794_279Enterococcus_hirae_NR_037082_272AY735408_Enterococcus_faecium_002Enterococcus_faecium_EF533987_092
1.001.001.001.001.000.970.970.970.970.970.990.990.990.990.99
Streptococcus_parasanguinis_ATCC_15912_NR_024842_275Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BF_266Lactococcus_lactis_subsp._lactis_KF147_NC_013656_T_267Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BQ_268Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CB_269Lactococcus_lactis_subsp._lactis_KF147_NC_013656_CH_270Lactococcus_lactis_subsp._lactis_KF147_NC_013656_BM_271
1.001.001.001.001.001.001.001.001.001.00
0.680.680.680.680.68
0.680.680.680.680.68
0.400.400.400.400.40
Weissella_kandleri_NR_044659_274Bacteria_G2WUYFR02DPIHT_Solenopsis_590
0.640.640.640.640.64
M58809_Lactobacillus_bifermentans_025Lactobacillus_bifermentans_JN175330_205
Bacteria_G2WUYFR02DS0HK_Solenopsis_5551.001.001.001.001.00
Lactobacillus_backi_DQ406862_122M58813_Lactobacillus_coryniformis_026uncultured_bacterium_GQ479965_192
1.001.001.001.001.00
Lactobacillus_rennini_LSP576007_046Lactobacillus_halophilus_AB240455_081
1.001.001.001.001.000.790.790.790.790.79
0.800.800.800.800.800.990.990.990.990.99
Paralactobacillus_selangorensis_NR_024885_282Lactobacillus_algidus_AB033209_277Lactobacillus_satsumensis_AB362683_166Lactobacillus_oeni_EU821345_180
0.930.930.930.930.93
Lactobacillus_cacaonum_AM905389_079M58824_Lactobacillus_mali_029
Lactobacillus_hordei_EU074850_147Lactobacillus_mali_FJ157230_225
0.960.960.960.960.960.640.640.640.640.640.960.960.960.960.96
Lactobacillus_capillatus_AB365978_052Lactobacillus_sucicola_AB458681_087
0.570.570.570.570.57
Lactobacillus_uvarum_EU345000_075Lactobacillus_sp._IMCC1736_DQ664203_078
0.680.680.680.680.680.880.880.880.880.88
0.630.630.630.630.63
0.260.260.260.260.26
Lactobacillus_nagelii_AB162131_073Lactobacillus_ghanensis_DQ523489_133
1.001. 001.001.001.00
Lactobacillus_mobilis_AB242320_188uncultured_Lactobacillus_sp._HM218831_198
uncultured_Lactobacillus_sp._HM218848_097uncultured_Lactobacillus_sp._HM218858_445
1.001.001.001.001.001.001.001.001.001.000.860.860.860.860.86
0.900.900.900.900.90
M58807_Lactobacillus_animalis_024Lactobacillus_apodemi_AJ871178_070uncultured_bacterium_DQ075206_041Lactobacillus_murinus_AJ621554_134
uncultured_bacterium_DQ815470_203uncultured_bacterium_DQ815437_216
0.930.930.930.930.93
uncultured_bacterium_EU791129_449uncultured_bacterium_EU790976_453
0.820.820.820.820.82
Lactobacillus_Q2_F7SSZP003G8XXC_330uncultured_bacterium_EU791098_446
0.810.810.810.810.81
Lactobacillus_Q9_F7SSZP003GEOFA_358Lactobacillus_Q1_F7SSZP003G0JMG_353Lactobacillus_Q1_F7SSZP003FIY29_362
1.001.001.001.001.000.810.810.810.810.810.310.310.310.310.31
0.470.470.470.470.47
0.800.800.800.800.80
0.950.950.950.950.95
Lactobacillus_equi_AB425924_190Bacteria_G4RPUYA02C9XKQ_Mycocepurus_476
M58803_Lactobacillus_agilis_021uncultured_bacterium_AB559729_186
0.650.650.650.650.650.810.810.810.810.811.001.001.001.001. 00
Lactobacillus_sp._C33LV5_AF197125_262uncultured_bacterium_AB506300_187M58828_Lactobacillus_ruminis_030Lactobacillus_ruminis_AB326354_112
0.590.590.590.590.591.001.001.001.001.000.950.950.950.950.95
0.360.360.360.360.36
Lactobacillus_ceti_AM292799_150Lactobacillus_saerimneri_AY255802_227Lactobacillus_sp._MbBipro17_HM534774_325Lactobacillus_sp._Tporo2_HM534775_324Lactobacillus_pobuzihii_AB326365_111Lactobacillus_sp._MbBbr1_HM534771_321
Lactobacillus_sp._121B_AF305930_261Lactobacillus_acidipiscis_AB023836_617
0.630.630.630.630.630.450.450.450.450.450.800.800.800.800.80
0.650.650.650.650.651.001.001.001.001.00
Lactobacillus_hayakitensis_AB267406_118uncultured_bacterium_AY212750_418
1.001.001.001.001.00
Bacteria_G4RPUYA02EQEGE_Mycocepurus_494Lactobacillus_salivarius_AB186340_107Lactobacillus_salivarius_EU428010_141
Bacteria_G4RPUYA02DHK61_Mycocepurus_477uncultured_Lactobacillus_sp._AY672088_235Bacteria_G4RPUYA02DJDFD_Mycocepurus_489Bacteria_G4RPUYA02EYMBR_Mycocepurus_540
Bacteria_G2WUYFR01BYHUN_Solenopsis_557Bacteria_G4RPUYA02D1FDL_Mycocepurus_483
Bacteria_G4SXT0Z01B916P_Solenopsis_5650.330.330.330.330.330.720.720.720.720.72
0.240.240.240.240.24
0.190.190.190.190.190.710.710.710.710.71
0.590.590.590.590.59
Bacteria_G4RPUYA02DQ24F_Mycocepurus_487uncultured_bacterium_GU293196_197
Lactobacillus_intermedius_AB167386_090Bacteria_G2WUYFR02DBVUH_Solenopsis_606
0.510.510.510.510.510.230.230.230.230.23
Bacteria_G2WUYFR01AL9EQ_Solenopsis_576Lactobacillus_GeEuTuBc0029_G1OJGBH03GOLAZ_376Lactobacillus_aviarius_AB001837_276Bacteria_G4RPUYA02EBAXL_Mycocepurus_538
0.630.630.630.630.63
Bacteria_G4RPUYA02EALIM_Mycocepurus_479Bacteria_G4RPUYA02EECR6_Mycocepurus_478
Bacteria_G4RPUYA02DLZY4_Mycocepurus_542Bacteria_G4RPUYA02ECJZU_Mycocepurus_504Bacteria_G4RPUYA02DSRND_Mycocepurus_481
Bacteria_G4RPUYA02EHKZP_Mycocepurus_4820.460.460.460.460.46
Bacteria_G4RPUYA02EKHNN_Mycocepurus_490Bacteria_G4RPUYA02DOSON_Mycocepurus_485
Bacteria_G4RPUYA02C1C45_Mycocepurus_5230.240.240.240.240.240.100.100.100.100.100.140.140.140.140.14
Bacteria_G4RPUYA02DCJC6_Mycocepurus_501Bacteria_G4RPUYA02EGVOD_Mycocepurus_539
0.700.700.700.700.70
Bacteria_G4RPUYA02EDTH9_Mycocepurus_493Bacteria_G4RPUYA02D8Y4Y_Mycocepurus_499
Bacteria_G4RPUYA02DJDR6_Mycocepurus_5160.500.500.500.500.500.260.260.260.260.26
0.900.900.900.900.90
0.100.100.100.100.10
0.240.240.240.240.24
0.310.310.310.310.310.310.310.310.310.310.200.200.200.200.200.500.500.500.500.50
0.290.290.290.290.290.500.500.500.500.50
0.070.070.070.070.07
0.130.130.130.130.13
0.230.230.230.230.23
0.350.350.350.350.35
0.250.250.250.250.25
0.540.540.540.540.54
0.420.420.420.420.42
0.610.610.610.610.61
0.540.540.540.540.54
Lactobacillus_concavus_AY683322_076uncultured_bacterium_AM930364_456
1.001.001.001.001.00
Lactobacillus_dextrinicus_D87679_131uncultured_bacterium_AM500777_455
1.001.001.001.0 01.001.001.001.001.001.00
Lactobacillus_composti_AB268119_058Lactobacillus_perolens_Y19167_260
Lactobacillus_harbinensis_AB368915_129Lactobacillus_brevis_AY974809_168
0.990.990.990.990.991.001.001.001.001.000.450.450.450.450.45
Lactobacillus_floricola_AB523781_173Lactobacillus_sp._MbBipro19_HM534770_312
1.001.001.001.001.00
Lactobacillus_tucceti_LSP576006_181Lactobacillus_nodensis_AB332024_415
0.890.890.890.890.89
Lactobacillus_letivazi_AJ417738_257Lactobacillus_versmoldensis_AJ496791_256
uncultured_bacterium_AF371492_223Lactobacillus_nantensis_AY690834_627Lactobacillus_crustorum_FJ645924_184Lactobacillus_farciminis_AJ417499_254Lactobacillus_mindensis_LSP313530_050
M58804_Lactobacillus_alimentarius_022Lactobacillus_bobalius_AY681134_080
Lactobacillus_kimchii_AF183558_6150.500.500.500.500.500.960.960.960.960.96
0.550.550.550.550.550.330.330.330.330.330.960.960.960.960.96
1.001.001.001.001.000.290.290.290.290.29
0.380 .380.380.380.380.260.260.260.260.26
0.740.740.740.740.74
Lactobacillus_sp._Thmro15_HM534814_319uncultured_Lactobacillus_sp._HM113222_148
uncultured_Lactobacillus_sp._HM046576_088uncultured_Firmicutes_bacterium_DQ837632_286Lactobacillus_sp._F7_EU753690_289
0.820.820.820.820.821.001.001.001.001.000.720.720.720.720.72
0.540.540.540.540.54
Lactobacillus_sp._Adhmto19_HM534810_323uncultured_Lactobacillus_sp._HM112055_149
uncultured_Lactobacillus_sp._HM113158_2260.240.240.240.240.240.640.640.640.640.64
uncultured_Firmicutes_bacterium_HM215043_121uncultured_Firmicutes_bacterium_HM215041_119uncultured_Firmicutes_bacterium_HM215042_120
0.970.970.970.970.971.001.001.001.001.00
uncultured_Bacilli_bacterium_HM113258_155uncultured_Firmicutes_bacterium_DQ837631_473uncultured_Firmicutes_bacterium_DQ837630_474
1.001.001.001.001.000.860.860.860.860 .861.001.001.001.001.00
0.240.240.240.240.24
0.450.450.450.450.45
Lactobacillus_amylotrophicus_AM236149_114M58806_Lactobacillus_amylophilus_023uncultured_bacterium_AM500848_457
0.960.960.960.960.961.001.001.001.001.00
Bacteria_G2WUYFR01ALAWT_Solenopsis_575Bacteria_G2WUYFR02DXBGU_Solenopsis_561
Lactobacillus_sp._TS3_AB284946_102Bacteria_G2WUYFR01BMLOS_Solenopsis_568
Bacteria_G2WUYFR01AWLV8_Solenopsis_567Bacteria_G2WUYFR02EUU2R_Solenopsis_592
0.650.650.650.650.65
Bacteria_G2WUYFR02D8NSR_Solenopsis_588Bacteria_G2WUYFR01AY213_Solenopsis_609
0.810.810.810.810.81
Bacteria_G2WUYFR02D6JYS_Solenopsis_586Bacteria_G2WUYFR01B9IUO_Solenopsis_602
0.380.380.380.380.38
Bacteria_G2WUYFR02DYQIU_Solenopsis_591Bacteria_G2WUYFR01CEH5G_Solenopsis_599
0.750.750.750.750.750.380.380.380.380.38
0.280.280.280.280.28
0.340.340.340.340.340.210.210.210.210.21
0.330.330.330.330.330.750.750.750.750 .75
0.050.050.050.050.05
0.040.040.040.040.04
0.000.000.000.000.00
Lactobacillus_fuchuensis_AB370875_109Lactobacillus_graminis_AM113778_045Bacteria_G28NS4E02EPXZY_Solenopsis_583Lactobacillus_curvatus_AM113777_621
0.340.340.340.340.34
Lactobacillus_sakei_EU555174_224uncultured_bacterium_DQ922980_431
0.810.810.810.810.81
Bacteria_G2WUYFR01BCWHI_Solenopsis_580Bacteria_G2WUYFR01BEKHY_Solenopsis_562Bacteria_G2WUYFR01BNE8X_Solenopsis_596
0.360.360.360.360.36
Bacteria_G2WUYFR01BQJEU_Solenopsis_569Bacteria_G2WUYFR01B93S1_Solenopsis_597
0.200.200.200.200.200.510.510.510.510.510.140.140.140.140.14
0.170.170.170.170.170.500.500.500.500.50
0.860.860.860.860.86
Lactobacillus_thailandensis_AB257863_060Lactobacillus_pantheris_AB362679_172
0.990.990.990.990.99
uncultured_compost_bacterium_FN667294_204uncultured_bacterium_AF371503_244
M58831_Lactobacillus_sharpeae_033Bacteria_G2WUYFR02D4CBL_Solenopsis_581
0 .990.990.990.990.99
Lactobacillus_guizhouensis_GU138576_113Lactobacillus_guizhouensis_EF433578_124
0.500.500.500.500.500.960.960.960.960.96
0.910.910.910.910.910.340.340.340.340.34
0.740.740.740.740.74
Lactobacillus_camelliae_AB257864_074uncultured_bacterium_GQ477902_196
uncultured_bacterium_GQ477899_2400.780.780.780.780.780.970.970.970.970.97
Bacteria_G2WUYFR02D1R7T_Solenopsis_560uncultured_compost_bacterium_FN667075_209Lactobacillus_nasuensis_AB608051_412
1.001.001.001.001.000.300.300.300.300.30
Lactobacillus_manihotivorans_AF000163_259Bacteria_G2WUYFR02D23R9_Solenopsis_570
uncultured_compost_bacterium_FN667077_210Bacteria_G2WUYFR02DXNIT_Solenopsis_604
0.780.780.780.780.780.350.350.350.350.350.600.600.600.600.60
0.720.720.720.720.72
0.380.380.380.380.38
Lactobacillus_saniviri_AB602569_307Lactobacillus_sp._Akpobro1_HM534767_314
1.001.001.001.0 01.00
Lactobacillus_sp._LM_17_AJ132757_417Lactobacillus_rhamnosus_EU184020_170
Lactobacillus_sp._N3_1_1_AB379909_2490.850.850.850.850.850.260.260.260.260.26
Lactobacillus_zeae_D86516_613X61135_Lactobacillus_casei_039M23928_Lactobacillus_casei_040Bacteria_G4RPUYA02DO5UR_Mycocepurus_498Bacteria_G4RPUYA02DGY9G_Mycocepurus_503
Bacteria_G4RPUYA02C44TI_Mycocepurus_553
0.850.850.850.850.850.800.800.800.800.80
0.460.460.460.460.46
Lactobacillus_larvae_AY667700_464Lactobacillus_GeEuF1Bc0029_G1OJGBH03GBVJ2_383
Lactobacillus_GeEuL2Bc0029_G1OJGBH03FPFCW_399Lactobacillus_paracasei_AY773954_215
Lactobacillus_sp._N1_5_2_AB379908_2510.360.360.360.360.36
Lactobacillus_sp._N4_4_AB379912_452Bacteria_G2WUYFR02D35PT_Solenopsis_566
0.390.390.390.390.39
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G7UHR_377Lactobacillus_GeEuF1Bc0029_G1OJGBH03HE4SG_381Lactobacillus_GeEuF1Bc0029_G1OJGBH03GD18U_386Lactobacillus_GeEuF1Bc0029_G1OJGBH03FXRZZ_396Lactobacillus_GeEuF1Bc0029_G1OJGBH03HA4AJ_401
0.680.680.680.680.680.300.300.300.300.300.130.130.130.130.13
0.130.130.130.130.13
0.190.190.190.190.19
0.060.060.060.060.06
0 .500.500.500.500.50
0.300.300.300.300.30
0.260.260.260.260.26
Pediococcus_pentosaceus_AB362987_053Bacteria_G2WUYFR02EYU2C_Solenopsis_608
0.530.530.530.530.53
uncultured_compost_bacterium_FN667076_208uncultured_bacterium_AF371496_213
0.780.780.780.780.78
Lactobacillus_senmaizukei_AB297927_414Lactobacillus_hammesii_AJ632219_043Lactobacillus_parabrevis_AM158249_095
Lactobacillus_sp._1.1424_FN185731_099uncultured_compost_bacterium_FN667298_211
0.590.590.590.590.590.590.590.590.590.590.090.090.090.090.090.360.360.360.360.36
Lactobacillus_brevis_ATCC_367_CP000416_f_177Bacteria_G2WUYFR02C9Q6O_Solenopsis_578
M58810_Lactobacillus_brevis_014X61134_Lactobacillus_brevis_013Bacteria_G2WUYFR01BA4B4_Solenopsis_564
0.410.410.410.410.41
Lactobacillus_brevis_ATCC_367_CP000416_o_176Lactobacillus_brevis_ATCC_367_CP000416_l_179Lactobacillus_brevis_ATCC_367_CP000416_c_174Lactobacillus_brevis_ATCC_367_CP000416_175
0.240.240.240.240.240.400.400.400.400.40
Bacteria_G2WUYFR02EUR0O_Solenopsis_574Bacteria_G2WUYFR01CAH48_Solenopsis_603
0.970.970.970.970.97
Lactobacillus_spicheri_LSP534844_059Lactobacillus_namurensis_AM259118_096
Lactobacillus_acidifarinae_AJ632158_093Lactobacillus_zymae_AJ632157_094
0.990.990.990.990.990.910.910.910.910.910.700.700.700.700.70
0.470.470.470.470.47
0.280.280.280.280.28
0.470.470.470.470.47
0.420.420.420.420.42
0.340.340.340.340.34
Lactobacillus_senioris_AB602570_298Lactobacillus_sp._Akporo7_HM534765_311
1.001.001.001.001.00
Lactobacillus_sp._JKD6_AF264701_614Lactobacillus_parafarraginis_AB262734_622
Lactobacillus_sp._r2_GQ247886_123M58821_Lactobacillus_hilgardii_017M59295_Lactobacillus_sp._034
0.440.440.440.440.440.950.950.950.950.95
Lactobacillus_farraginis_HM534766_139Lactobacillus_farraginis_AB262732_183Lactobacillus_faeni_AB362687_428
0.600.600.600.600.601.001.001.001.001.000.780.780.780.780.78
0.600.600.600.600.600.250.250 .250.250.25
Lactobacillus_sp._NGRI_0130_AB362984_250Lactobacillus_rapi_AB366389_624
0.950.950.950.950.95
Lactobacillus_kisonensis_AB366388_628Lactobacillus_sp._rennanqilfy19_AY363377_237Lactobacillus_parabuchneri_AB205056_626
0.570.570.570.570.57
Lactobacillus_fermentum_FJ844993_130Lactobacillus_kefiri_AJ621553_135
1.001.001.001.001.00
Lactobacillus_otakiensis_AB366386_620Lactobacillus_sunkii_AB366385_625M58811_Lactobacillus_buchneri_015Lactobacillus_parakefiri_AY026750_612
0.860.860.860.860.860.400.400.400.400.400.380.380.380.380.380.640.640.640.640.640.840.840.840.840.840.510.510.510.510.510.510.510.510.510.51
0.820.820.820.820.82
0.890.890.890.890.89
Lactobacillus_ozensis_AB572588_051Lactobacillus_sp._MbBipro7_HM534743_313
0.960.960.960.960.96
uncultured_Bacilli_bacterium_HM112474_145uncultured_Lactobacillus_sp._HM008721_068
Lactobacillus_sp._Am_09_AJ971903_295Lactobacillus_kunkeei_AB559820_185Lactobacillus_kunkeei_EU753691_291
0.990.990.990.990.990.550.550.550.550.550.960 .960.960.960.960.550.550.550.550.55
uncultured_Bacilli_bacterium_HM109480_143uncultured_Bacilli_bacterium_HM109610_144uncultured_Bacilli_bacterium_HM112778_146
0.990.990.990.990.99
uncultured_Bacilli_bacterium_HM112623_467Lactobacillus_Q7A_F348WMR04JBQ2M_333Lactobacillus_Q7A_F348WMR04JGOIJ_334
Lactobacillus_Q7A_F348WMR04IFQ7D_360Lactobacillus_Q7A_F348WMR04JDJG4_363
Lactobacillus_Q7A_F348WMR04JKTXT_340Lactobacillus_Q7A_F348WMR04JKJ8J_611
1.001.001.001.001.000.230.230.230.230.230.610.610.610.610.610.230.230.230.230.23
0.240.240.240.240.240.410.410.410.410.41
0.490.490.490.490.49
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GX6IB_397Lactobacillus_GeEuF1Bc0029_G1OJGBH03G5C2A_398Lactobacillus_GeEuF1Bc0029_G1OJGBH03HAYWD_403
0.400.400.400.400.400.970.970.970.970.97
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FWMY4_392Lactobacillus_GeSoB2Bc0019_G1OJGBH03GHBHU_382
Lactobacillus_GeSoB2Bc0019_G1OJGBH03FQASF_390Lactobacillus_GeEuB2Bc0029_G1OJGBH03G4ZG5_389Lactobacillus_GeEuA1Bc0029_G1OJGBH03GHVOY_407Lactobacillus_GeEuPeBc0029_G1OJGBH03FN2ZU_366Lactobacillus_GeEuF1Bc0029_G1OJGBH03GZEIB_379Lactobacillus_GeEuL2Bc0029_G1OJGBH03G5A0S_404Lactobacillus_GeEuB2Bc0029_G1OJGBH03F1OGP_372Lactobacillus_GeEuPeBc0029_G1OJGBH03G6R03_373Lactobacillus_GeEuL2Bc0029_G1OJGBH03F6ICY_393
0.260.260.260.260.26
Lactobacillus_GeSoL1Bc0019_G1OJGBH03GQQ4M_370Lactobacillus_GeEuPeBc0029_G1OJGBH03F3HKE_395
Lactobacillus_GeSoB2Bc0019_G1OJGBH03HCW2S_384Lactobacillus_GeEuB2Bc0029_G1OJGBH03FPP40_408
0.330.330.330.330.33
Lactobacillus_GeEuF1Bc0029_G1OJGBH03FKN70_385Lactobacillus_GeEuF1Bc0029_G1OJGBH03F5LSE_409
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G4BBA_394Lactobacillus_GeEuF1Bc0029_G1OJGBH03GL6DL_400
0.400.400.400.400.400.550.550.550.550.550.310.310.310.310.31
0.070.070.070.070.07
0.010.010.010.010.010.040.040.040.040.040.030.030.030.030.03
0.100.100.100.100.10
0.390.390.390.390.39
0.130.130.130.130.130.160.160.160.160.16
0.330.330.330.330.33
0.360.360.360.360.36
0.360.360.360.360 .36
Lactobacillus_sp._MbBipto3_HM534760_308Lactobacillus_sp._Mbhoto3_HM534763_310
1.001.001.001.001.00
X76330|g535112_Lactobacillus_fructivorans_028Lactobacillus_homohiochii_AJ621552_128
0.960.960.960.960.96
Lactobacillus_sp._Akhmbto4_HM534764_306Lactobacillus_florum_AB498047_048Lactobacillus_florum_AB498046_103
1.001.001.001.001.00
Lactobacillus_lindneri_X95421_252X61132_Lactobacillus_sanfrancisco_031X76327|g535106_Lactobacillus_sanfrancisco_032
1.001.001.001.001.000.860.860.860.860.860.820.820.820.820.82
1.001.001.001.001.000.930.930.930.930.93
Lactobacillus_Q13_F7SSZP003FI5FN_326Lactobacillus_Q13_F7SSZP003HFPEY_331Lactobacillus_Q13_F7SSZP003G5ZTS_349
Lactobacillus_Q1_F7SSZP003G3NEK_3520.790.790.790.790.790.190.190.190.190.19
0.230.230.230.230.23
Lactobacillus_Q1_F7SSZP003GUV9L_378Lactobacillus_Q11_F7SSZP003GTXXJ_354Lactobacillus_Q1_F7SSZP003GSQA4_329
Lactobacillus_Q1_F7SSZP003GRNEB_339Lactobacillus_Q1_F7SSZP003F337Q_327Lactobacillus_Q1_F7SSZP003HB7B3_332
0.560.560.560.560.560.360.360.360.360.36
Lactobacillus_Q11_F7SSZP003HHA6K_338Lactobacillus_Q1_F7SSZP003HBKSR_328
Lactobacillus_Q1_F7SSZP003HHGTB_3350.400.400.400.400.400.130.130.130.1 30.13
0.400.400.400.400.400.820.820.820.820.82
0.900.900.900.900.90
Lactobacillus_Q13_F7SSZP003FP9MZ_359Lactobacillus_Q1_F7SSZP003GZRYO_348
Lactobacillus_Q13_F7SSZP003GTPZN_375Lactobacillus_Q13_F7SSZP003FK90P_365Lactobacillus_Q1_F7SSZP003GVG3B_367
0.280.280.280.280.28
Lactobacillus_Q13_F7SSZP003FNTFE_361Lactobacillus_Q1_F7SSZP003G9G18_364
Lactobacillus_Q1_F7SSZP003FO813_3740.530.530.530.530.530.050.050.050.050.050.070.070.070.070.07
Lactobacillus_Q1_F7SSZP003F6H96_369Lactobacillus_Q13_F7SSZP003GLX8O_347
Lactobacillus_Q1_F7SSZP003HB207_344Lactobacillus_Q13_F7SSZP003GSJYU_350Lactobacillus_Q1_F7SSZP003G83HT_355Lactobacillus_Q1_F7SSZP003FQFVI_368
0.930.930.930.930.930.820.820.820.820.82
Lactobacillus_Q1_F7SSZP003FVDOE_343Lactobacillus_Q1_F7SSZP003GB27S_351
Lactobacillus_Q1_F7SSZP003FZBLV_345Lactobacillus_Q13_F7SSZP003HAPYQ_346
Lactobacillus_Q1_F7SSZP003FZDPQ_356Lactobacillus_Q1_F7SSZP003FJ41T_341
Lactobacillus_Q1_F7SSZP003FKU5E_3570.460.460.460.460.46
Lactobacillus_Q1_F7SSZP003FV2DK_342Lactobacillus_Q13_F7SSZP003GM303_371
0.130.130.130.130.130.030.030.030.030.03
0.010.010.010.010.010.090.090.090.090.09
0.030.030.030.030.030.000.0 00.000.000.000.050.050.050.050.05
0.060.060.060.060.060.070.070.070.070.07
0.070.070.070.070.070.050.050.050.050.05
0.040.040.040.040.04
0.030.030.030.030.03
0.060.060.060.060.06
0.070.070.070.070.07
0.200.200.200.200.20
0.630.630.630.630.63
0.300.300.300.300.30
0.260.260.260.260.26
0.390.390.390.390.39
0.310.310.310.310.31
0.070.070.070.070.07
0.060.060.060.060.06
Lactobacillus_malefermentans_AM113783_182Bacteria_G2WUYFR02DUYD5_Solenopsis_559
0.990.990.990.990.99
Lactobacillus_sp._DCY51_EU678893_106Bacteria_G2WUYFR02DN04P_Solenopsis_556
Lactobacillus_collinoides_AB005893_044Lactobacillus_paracollinoides_AB159218_167
1.001.001.001 .001.00
Lactobacillus_odoratitofui_AB365975_108Lactobacillus_similis_AB282889_077Bacteria_G2WUYFR02ERHIP_Solenopsis_600
0.640.640.640.640.640.460.460.460.460.460.540.540.540.540.54
0.510.510.510.510.510.740.740.740.740.74
0.800.800.800.800.80
uncultured_bacterium_AF371494_220Lactobacillus_GeEuF1Bc0029_G1OJGBH03F8WFB_405
Bacteria_G2WUYFR02DVW1P_Solenopsis_598Bacteria_G28NS4E02DMQ1E_Solenopsis_594
Bacteria_G2WUYFR02D1WHH_Solenopsis_572Bacteria_G2WUYFR02D5DLK_Solenopsis_607
0.880.880.880.880.880.200.200.200.200.20
Lactobacillus_fabifermentans_AM905388_072Lactobacillus_plantarum_FJ915797_245
Bacteria_G28NS4E02EJUZ3_Solenopsis_601Lactobacillus_plantarum_JN126052_160
Lactobacillus_japonicus_AB681817_411Bacteria_G28NS4E02C3G8Q_Solenopsis_577
Bacteria_G28NS4E02DIEI6_Solenopsis_5930.510.510.510.510.51
0.030.030.030.030.03
Lactobacillus_plantarum_AJ965482_127D79211_Lactobacillus_pentosus_018
Lactobacillus_plantarum_AM279758_2020.100.100.100.100.10
M58827_Lactobacillus_plantarum_019Lactobacillus_plantarum_FJ386491_169
0.240.240.240.240.24
Lactobacillus_plantarum_FN252881_447Lactobacillus_plantarum_AB371712_238
Bacteria_G2WUYFR02DYMES_Solenopsis_6100.760.760.760.760.760.300.300.300.300.30
Lactobacillus_plantarum_AB371714_248Bacteria_G4RPUYA02D9F7Z_Mycocepurus_531
Bacteria_G28NS4E02DQD3U_Solenopsis_5580.600.600.600.600.600.130.130.130.130.13
0.060.060.060.060.06
0.030.030.030.030.03
0.010.010.010.010.01
0.140.140.140.140.14
0.340.340.340.340.34
0.090.090.090.090.09
0.500.500.500.500.50
0.760.760.760.760.76
0.140.140.140.140.14
Lactobacillus_siliginis_AB370882_413Lactobacillus_rossiae_LSP564009_156Lactobacillus_rossiae_AM920328_061Bacteria_G4RPUYA02DO47R_Mycocepurus_541
0.590.590.590.590.59
Lactobacillus_GeEuF1Bc0029_G1OJGBH03GO5Q0_380Lactobacillus_GeEuF1Bc0029_G1OJGBH03HCYM0_388Lactobacillus_GeEuF1Bc0029_G1OJGBH03FYH6Y_406
Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2VUK_391Lactobacillus_GeEuF1Bc0029_G1OJGBH03G2OEC_402
0.850.850.850.850.850.590.590.590.590.590.590.590.590.590.59
0.690.690.690.690.691.001.001.001.001.00
Lactobacillus_suebicus_LSU575744_162Lactobacillus_vaccinostercus_AB362691_419Bacteria_G2WUYFR02DYIH7_Solenopsis_573
1.001.001.001.001.000.970.970.970.970.97
Lactobacillus_oligofermentans_AY733084_110uncultured_bacterium_HQ716645_236
0.530.530.530.530.53
Bacteria_G2WUYFR02EJBF3_Solenopsis_595Bacteria_G4RPUYA02EP6UO_Mycocepurus_488
Bacteria_G4RPUYA02D4F5G_Mycocepurus_5140.910.910.910.910.910.610.610.610.610.61
0.990.990.990.990.99
0.840.840.840.840.84
Lactobacillus_equigenerosi_AB288050_091Lactobacillus_antri_AY253658_157
0.850.850.850.850.85
Lactobacillus_fermentum_AF522394_253Lactobacillus_fermentum_EF535257_234
Bacteria_G2WUYFR01A00YD_Solenopsis_585M58819_Lactobacillus_fermentum_027Lactobacillus_fermentum_GQ131191_132
0.460.460.460.460.460.190.190.190.190.19
1.001.001.001.001.000.750.750.750.750.75
Lactobacillus_sp._G24_AF197126_258Lactobacillus_mucosae_AF126738_616
1.001.001.001.001.00
Lactobacillus_alvi_HQ718585_410Lactobacillus_ingluviei_AF308147_255
Bacteria_G4RPUYA02D2F2O_Mycocepurus_4961. 001.001.001.001.000.760.760.760.760.76
Lactobacillus_sp._TMW_1.1309_AM279150_189uncultured_bacterium_AB559717_435Lactobacillus_coleohominis_AM113776_623
1.001.001.001.001.00
Lactobacillus_sp._oral_taxon_052_GQ422710_042X94230|g1313964_Lactobacillus_panis_038
uncultured_bacterium_GQ505032_4540.780.780.780.780.78
uncultured_bacterium_HM218875_432Lactobacillus_kalixensis_AY253659_158X94229|g1313963_Lactobacillus_oris_035uncultured_bacterium_AB559668_434
0.970.970.970.970.970.990.990.990.990.990.530.530.530.530.531.001.001.001.001.00
uncultured_bacterium_AY958911_433X61136_Lactobacillus_vaginalis_036
Lactobacillus_vaginalis_HM534769_138Lactobacillus_vaginalis_AF243177_264Bacteria_G4RPUYA02ENLBJ_Mycocepurus_529
0.240.240.240.240.240.230.230.230.230.230.570.570.570.570.57
Lactobacillus_frumenti_LSP250074_629X76329|g534948_Lactobacillus_pontis_037Bacteria_G4RPUYA02C1IZC_Mycocepurus_534
0.930.930.930.930.93
Lactobacillus_sp._Akhmro1_HM534768_309Lactobacillus_reuteri_F275_AP007281_062Lactobacillus_reuteri_F275_AP007281_c_063Lactobacillus_reuteri_F275_AP007281_n_064Lactobacillus_reuteri_F275_AP007281_f_065Lactobacillus_reuteri_F275_AP007281_q_066Lactobacillus_reuteri_F275_AP007281_i_067
0.880.880.880.880.88
uncultured_bacterium_EU791265_443uncultured_bacterium_EU791072_430Bacteria_G4RPUYA02EQ6U1_Mycocepurus_546
Bacteria_G4RPUYA02DJ8IV_Mycocepurus_533Bacteria_G4RPUYA02D2IM2_Mycocepurus_549
0.590.590.590.590.59
uncultured_bacterium_EU791134_438Bacteria_G4RPUYA02C82F5_Mycocepurus_513
Bacteria_G4RPUYA02C82QY_Mycocepurus_5450.690.690.690.690.690.510.510.510.510.51
0.050.050.050.050.050.410.410.410.410.41
0.930.930.930.930.93
Bacteria_G4RPUYA02C02W1_Mycocepurus_517Bacteria_G4RPUYA02C8GJU_Mycocepurus_520
Bacteria_G4RPUYA02DBPUF_Mycocepurus_522uncultured_bacterium_GQ175588_243
uncultured_bacterium_EU791181_247uncultured_bacterium_EU791159_440uncultured_bacterium_EU791116_439Bacteria_G4RPUYA02D4ZHO_Mycocepurus_550
0.440.440.440.440.44
AY239419_uncultured_bacterium_012Bacteria_G4RPUYA02DD4H3_Mycocepurus_544Bacteria_G4RPUYA02ECX6B_Mycocepurus_551
uncultured_bacterium_EU622700_459Bacteria_G4RPUYA02DAS3I_Mycocepurus_547
0.420.420.420.420.420.140.140.140.140.140.040.040.040.040.04
0.030.030.030.030.03
Bacteria_G2WUYFR01CFJ17_Solenopsis_579AE017198_Lactobacillus_johnsonii_NCC_533_006AE017198_Lactobacillus_johnsonii_NCC_533_007AE017198_Lactobacillus_johnsonii_NCC_533_008AE017198_Lactobacillus_johnsonii_NCC_533_009AE017198_Lactobacillus_johnsonii_NCC_533_010AE017198_Lactobacillus_johnsonii_NCC_533_011Lactobacillus_johnsonii_EU780913_140Bacteria_G4RPUYA02D066W_Mycocepurus_506Bacteria_G4RPUYA02DN9RG_Mycocepurus_515Bacteria_G4SXT0Z01BWJ7N_Solenopsis_582uncultured_bacterium_EU791127_442
Bacteria_G4RPUYA02DLV9U_Mycocepurus_521Bacteria_G4RPUYA02DCLGW_Mycocepurus_500
Bacteria_G4RPUYA02EL5KB_Mycocepurus_495Bacteria_G4RPUYA02EE9DE_Mycocepurus_527
0.780.780.780.780.780.280.280.280.280.280.110.110.110.110.11
0.060.060.060.060.06
Bacteria_G4RPUYA02DANKJ_Mycocepurus_519Bacteria_G4RPUYA02D9HKG_Mycocepurus_528Bacteria_G4RPUYA02C93MK_Mycocepurus_554Bacteria_G4RPUYA02C8Q5C_Mycocepurus_525Bacteria_G4RPUYA02DPY4I_Mycocepurus_532
0.540.540.540.540.540.210.210.210.210.210.170.170.170.170.17
Lactobacillus_taiwanensis_EU487512_084Lactobacillus_iatae_EF187258_137
0.410.410.410.410.41
Lactobacillus_gasseri_ATCC_33323_AF519171_618Lactobacillus_sp._61D_FR681902_426AY959035_uncultured_bacterium_004AY958891_uncultured_bacterium_005
uncultured_bacterium_EF653412_219uncultured_bacterium_AY959115_463
uncultured_bacterium_AY959095_241uncultured_bacterium_AY959163_436
uncultured_Firmicutes_bacterium_EF682866_049Lactobacillus_iners_Y16329_057uncultured_bacterium_AY959039_239
Bacteria_G4RPUYA02DE844_Mycocepurus_530Bacteria_G4RPUYA02EQ2ZF_Mycocepurus_537
0.160.160.160.160.160.650.650.650.650.65
0.200.200.200.200.200.360.360.360.360.36
0.400.400.400.400.40
Bacteria_G4RPUYA02D30I7_Mycocepurus_543Lactobacillus_crispatus_AJ242969_265
Bacteria_G4RPUYA02EGYQJ_Mycocepurus_492Bacteria_G4RPUYA02D6ETP_Mycocepurus_491
Bacteria_G4RPUYA02C254J_Mycocepurus_4970.740.740.740.740.74
Lactobacillus_GeEuPeBc0029_G1OJGBH03GSTGE_387Bacteria_G4RPUYA02C1VXY_Mycocepurus_510
Bacteria_G4RPUYA02C8GY8_Mycocepurus_507Bacteria_G4RPUYA02C8R7C_Mycocepurus_536
0.710.710.710.710.71
Bacteria_G4RPUYA02DNU3H_Mycocepurus_512Bacteria_G4RPUYA02D69JH_Mycocepurus_552
0.470.470.470.470.470.170.170.170.170.170.140.140.140.140.140.050.050.050.050.05
Bacteria_G4RPUYA02D481Y_Mycocepurus_524Lactobacillus_crispatus_EU559595_178Bacteria_G4RPUYA02C45QD_Mycocepurus_486Bacteria_G4RPUYA02D8UIL_Mycocepurus_548
0.940.940.940.940.940.130.130.130.130.13
Lactobacillus_crispatus_DQ317604_098Bacteria_G4RPUYA02C41OQ_Mycocepurus_502Bacteria_G4SXT0Z01B38UP_Solenopsis_584
0.960.960.960.960.960.460.460.460.460.46
uncultured_bacterium_AY958844_441Bacteria_G4RPUYA02DQ2EG_Mycocepurus_508
uncultured_bacterium_AY958858_054uncultured_bacterium_AY958900_201
0.880.880.880.880.880.640.640.640.640.64
uncultured_bacterium_DQ057433_465Lactobacillus_gallinarum_LGA417737_047
uncultured_bacterium_GQ267932_217Lactobacillus_acidophilus_EU878007_125Lactobacillus_helveticus_EU419585_221
0.840.840.840.840.840.340.340.340.340.340.090.090.090.090.090.150.150.150.150.15
M58802_Lactobacillus_acidophilus_003uncultured_bacterium_FJ880117_199
0.860.860.860.860.86
Lactobacillus_kitasatonis_AB186339_115Lactobacillus_acidophilus_AY773947_126
Bacteria_G4RPUYA02D8O9Y_Mycocepurus_5090.130.130.130.130.130.230.230.230.230.230.560.560.560.560.56
uncultured_bacterium_GQ267930_218uncultured_bacterium_GQ267866_229
Bacteria_G4RPUYA02DHIVZ_Mycocepurus_505Bacteria_G4RPUYA02DBPK8_Mycocepurus_511
0.510.510.510.510.510.090.090.090.090.09
uncultured_bacterium_DQ318873_421Bacteria_G4RPUYA02D2L56_Mycocepurus_480
0.550.550.550.550.55
Lactobacillaceae_bacterium_DJF_003_EU728746_101uncultured_bacterium_DQ318874_191
0.960.960.960.960.96
Lactobacillus_equicursoris_AB290830_116Lactobacillus_sp._66c_FR681900_427
1.001.001.001.001.00
M58823_Lactobacillus_delbrueckii_016Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_X_301Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CV_302Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CY_304Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_B_297Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CC_299Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_S_305
0.050.050.050.050. 05
uncultured_bacterium_GQ267952_214Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_DJ_296Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_CK_300Lactobacillus_delbrueckii_subsp._bulgaricus_2038_CP000156_BA_303
0.210.210.210.210.21
0.140.140.140.140.14
0.410.410.410.410.410.780.780.780.780.78
0.720.720.720.720.72
0.910.910.910.910.91
0.420.420.420.420.42
0.070.070.070.070.07
0.110.110.110.110.11
0.030.030.030.030.03
0.030.030.030.030.03
Lactobacillus_ultunensis_AY253660_159Lactobacillus_kefiranofaciens_subsp._kefiranofaciens_AM113781_630
0.360.360.360.360.36
uncultured_compost_bacterium_FN667084_212uncultured_Lactobacillus_sp._HM218856_458
Bacteria_G4RPUYA02DQODF_Mycocepurus_526Bacteria_G4RPUYA02C1VT3_Mycocepurus_535
0.690.690.690.690.690.350.350.350.350. 35
uncultured_Lactobacillus_sp._HM218874_085Bacteria_G4RPUYA02D1G4P_Mycocepurus_518
uncultured_Lactobacillus_sp._HM218864_193uncultured_Lactobacillus_sp._HM218878_451
1.001.001.001.001.000.280.280.280.280.280.230.230.230.230.23
0.070.070.070.070.070.060.060.060.060.06
uncultured_bacterium_FJ682870_232Bacteria_G2WUYFR01AP069_Solenopsis_571
0.570.570.570.570.57
uncultured_Lactobacillus_sp._HM218839_462Bacteria_G4SXT0Z01B6HAY_Solenopsis_563
0.070.070.070.070.07
Lactobacillus_amylovorus_GRL_1112_CP002338_A_161Lactobacillus_amylovorus_GRL_1112_CP002338_K_163Lactobacillus_amylovorus_GRL_1112_CP002338_AQ_164Lactobacillus_amylovorus_GRL_1112_CP002338_BQ_165Bacteria_G4RPUYA02ED17E_Mycocepurus_484uncultured_Lactobacillus_sp._HM218861_246
uncultured_Lactobacillus_sp._HM218863_4200.230.230.230.230.23
uncultured_Lactobacillus_sp._HM218833_460uncultured_Lactobacillus_sp._HM218869_461
0.880.880.880.880.88
uncultured_Lactobacillus_sp._HM218868_448uncultured_Lactobacillus_sp._HM218862_444uncultured_Lactobacillus_sp._HM218873_450
0.410.410.410.410.410.630.630.630.630.63
0.030.030.030.030.03
0.050.050.050.050.05
0.070.070.070.070.07
0.000.000.000.000.00
uncultured_Lactobacillus_sp._HM218837_086uncultured_bacterium_HM218871_194uncultured_bacterium_HM218855_195
0.610.610.610.610.610.570. 570.570.570.57
uncultured_bacterium_AY958851_055uncultured_bacterium_AY958918_422
Lactobacillus_psittaci_LPS272391_142Lactobacillus_jensenii_EU559601_171Lactobacillus_fornicalis_Y18654_619
0.960.960.960.960.960.650.650.650.650.650.410.410.410.410.41
0.660.660.660.660.660.050.050.050.050.05
Lactobacillus_hamsteri_LHA306298_104Lactobacillus_amylolyticus_DSM_11664_Y17361_263
0.660.660.660.660.66
uncultured_bacterium_HM218836_437Lactobacillus_gastricus_AY253657_230
Lactobacillus_intestinalis_LIN306299_100Lactobacillus_sp._ASF360_AF157050_273
uncultured_bacterium_AY239415_206uncultured_bacterium_AY239416_207
0.990.990.990.990.99
Lactobacillus_Q1_F7SSZP003GT0PR_336Lactobacillus_Q13_F7SSZP003GZ6SM_337
0.930.930.930.930.930.760.760.760.760.760.930.930.930.930.93
uncultured_Lactobacillus_sp._HM218872_429uncultured_Lactobacillus_sp._FJ192637_089
uncultured_bacterium_GU808381_200M58801_Lactobacillus_acetotolerans_020Lactobacillus_acetotolerans_FR683099_105
0.990.990.990.990.99
Bacteria_G2WUYFR01BBUKF_Solenopsis_605Lactobacillus_sp._Mbhsr5_HM534808_318Lactobacillus_sp._MbHmro1_HM534806_320
uncultured_Firmicutes_bacterium_HM215048_466Lactobacillus_sp._Adhmro12_HM534786_315Lactobacillus_sp._Afpor8_HM534796_322
0.350.350.350.350.350.050.050.050.050.05
Lactobacillus_sp._Afpoto13_HM534795_316Lactobacillus_sp._Aahonto7_HM534805_317
Firmicutes_bacterium_Bt_aa_02_AJ971929_293Lactobacillus_sp._Mardanium_GU233458_288
Lactobacillus_sp._Taj_KS164_GU233457_2900.990.990.990.990.99
uncultured_Lactobacillus_sp._HM113326_468uncultured_Lactobacillus_sp._HM046568_082uncultured_Lactobacillus_sp._HM046579_083
0.790.790.790.790.79
uncultured_Firmicutes_bacterium_DQ837634_469uncultured_Firmicutes_bacterium_DQ837635_471Bacteria_G2WUYFR01A2OJ0_Solenopsis_589
0.260.260.260.260.260.390.390.390.390.39
0.310.310.310.310.31
uncultured_Lactobacillus_sp._HM113281_154uncultured_Bacilli_bacterium_HM113257_425
0.540.540.540.540.54
uncultured_Lactobacillus_sp._AY370183_071uncultured_Firmicutes_bacterium_DQ837637_472
0.530.530.530.530.53
uncultured_Lactobacillus_sp._HM113333_151uncultured_Lactobacillus_sp._HM112866_153
0.290.290.290.290.29
uncultured_Lactobacillus_sp._HM112010_424Lactobacillus_alvei_AY667698_136Lactobacillus_sp._3b_EU753698_294
0.310.310.310.310.310.440.440.440.440.440.380.380.380.380.38
Lactobacillus_apis_AY667701_222Bacteria_G4SXT0Z01AYJLY_Solenopsis_587
0.890.890.890.890.89
uncultured_Lactobacillus_sp._HM113203_152Lactobacillus_insectis_AY667699_283
Lactobacillus_sp._B3_EU753697_292uncultured_Firmicutes_bacterium_DQ837636_470
0.540.540.540.540.540.470.470.470.470.47
0.190.190.190.190.19
0.260.260.260.260.26
0.450.450.450.450.45
0.300.300.300.300.30
0.040.040.040.040.04
0.000.000.000.000.000.030.030.030.030.03
0.390.390.390.390.39
0.330.330.330.330.330.360.360.360.360.36
0. 380.380.380.380.380.350.350.350.350.35
0.210.210.210.210.210.040.040.040.040.04
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.040.040.040.040.04
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.010.010.010.010.01
0.190.190.190.190.19
0. 050.050.050.050.05
0.060.060.060.060.06
0.070.070.070.070.070.050.050.050.050.050.070.070.070.070.070.030.030.030.030.03
0.000.000.000.000.00
0.000.000.000.000.00
0.000.000.000.000.00
0.010.010.010.010.01
0.070.070.070.070.07
0.110.110.110.110.110.070.070.070.070.07
0.380.380.380.380.38
0.070.070.070.070.07
0.040.040.040.040.04
0.030.030.030.030.03
0.040.040.040.040.04
0.040.040.040.040.04
0.060.060.060.060.06
0. 000.000.000.000.00
0.050.050.050.050.05
0.050.050.050.050.05
0.030.030.030.030.03
0.090.090.090.090.09
0.060.060.060.060.06
0.050.050.050.050.05
0.000.000.000.000.00
0.010.010.010.010.01
0.010.010.010.010.01
0.010.010.010.010.01
0.040.040.040.040.04
0.010.010.010.010.01
0.040.040.040.040.04
0.050.050.050.050.05
0.030.030.030.030.03
0.060.060.060.060.06
0.350.350.350.350.35
0.750.750.750.750.75
Firm5
Fig. S2 E.
Table S1. Simple sequence statistics of three 16S rDNA sequence alignments. Alignment All characters Constant Variable Autapomorphic
Full-length 2206 852 853 501 Partial 783 221 411 151
Combined 2273 834 929 510
!Table S2. Mycocepurus smithii-associated OTUs broken down into number of reads associated with workers versus number of reads associated with the fungus-garden.!Mycocepurus-associated OTU
# reads from fungus garden
# reads from workers
Top BLAST hit
Percent sequence identity
OTU 1 Garden=6203 Worker=7943 L. johnsonii 99% sequence identity OTU 2 Garden=1879 Worker=1869 L. crispatus 99% sequence identity OTU 3 Garden=1493 Worker=1301 L. salivarius 97% sequence identity OTU 4 Garden=660 Worker=399 L. aviarius 99% sequence identity OTU 5 Garden=628 Worker=178 L. crispatus 98% sequence identity OTU 6 Garden=143 Worker=455 L. salivarius 99% sequence identity OTU 7 Garden=479 Worker=107 L. reuteri 99% sequence identity OTU 8 Garden=23 Worker=408 L. salivarius 98% sequence identity OTU 9 Garden=307 Worker=113 L. aviarius 90% sequence identity OTU 10 Garden=408 Worker=1 L. johnsonii 95% sequence identity
!