Global portal includes phenotypic data with traditional passport data
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Transcript of Global portal includes phenotypic data with traditional passport data
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Global portal includes phenotypic data with traditional passport data
Working SessionWorking SessionTDWG 2009TDWG 2009
12 Nov12 Nov
Michael Mackay
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ContentMethods for assessing accessions against
traitsNeed for flexibility managing methodsCore metadata to support methods?
Environmentally sensitive traits require information about the experiment/locationHow to support multiple location data?Core metadata to support environmentally
sensitive data?
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Methods - 1
• One trait can be assessed using different methods
• For example, ‘drought tolerance’ can be assessed by:– Avoidance / phenology– Deep roots / morphology– Na exclusion / chemical– Etc.
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Passport
Methods – 2
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Methods - 3
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Methods - 2
Trait Category
Trait
Trait Method
Trait Method 1Trait Method 2
Trait Method 3
LocationMetadata
11
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Multi Method example
Two methods to “measure” RWA But what about:• Biotypes• Races• etc?
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Method metadata
• Current portal handles scores, units and ranges;
• Need to add functionality for biological variety: biotypes of insects, races of pathogens etc.
• Citation for a method?
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Other method metadata?Other method metadata?
• ?
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Location/experiment metadata - 1Location/experiment metadata - 1Current status in global portal
Comment on categories of traits?
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Location/experiment metadata - 2Location/experiment metadata - 2• Experiment identification/name/title.• Purpose of experiment.• Location description/geo-reference/altitude.• Start and end dates.• Field/lab/greenhouse options?• Description of treatments, plot size etc?• Citation – if available?• Institution and individual responsible?• Contact details?
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Location/experiment metadata - 3Location/experiment metadata - 3
The intention is to include summary data only, but what additional info is needed: Maximum, minimum, standard deviation???
??
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Some functionality considerations
• Start with crop, then ‘drill’ the query down.
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‘‘Drilling down’Drilling down’Step 1: Start with Barley accessions with geo-references
Step 2: Add NSGC and Origin of France to the query.
Replacecurrentquery
Add tocurrentquery
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Some functionality considerations
• Start with crop, then ‘drill’ the query down.
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Additional location metadata - 4
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Discussion points - 1
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Discussion points - 2
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Discussion points - 3
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Discussion points - 4