Full wwPDB X-ray Structure Validation Report i - RCSB...
Transcript of Full wwPDB X-ray Structure Validation Report i - RCSB...
Full wwPDB X-ray Structure Validation Report i○
Mar 21, 2019 – 07:46 AM EDT
PDB ID : 4WSNTitle : Crystal structure of the COP9 signalosome, a P1 crystal form
Authors : Bunker, R.D.; Lingaraju, G.M.; Thoma, N.H.Deposited on : 2014-10-28
Resolution : 5.50 Å(reported)
This is a Full wwPDB X-ray Structure Validation Report for a publicly released PDB entry.
We welcome your comments at [email protected] user guide is available at
https://www.wwpdb.org/validation/2017/XrayValidationReportHelpwith specific help available everywhere you see the i○ symbol.
The following versions of software and data (see references i○) were used in the production of this report:
MolProbity : 4.02b-467Xtriage (Phenix) : 1.13
EDS : rb-20031633Percentile statistics : 20171227.v01 (using entries in the PDB archive December 27th 2017)
Refmac : 5.8.0158CCP4 : 7.0 (Gargrove)
Ideal geometry (proteins) : Engh & Huber (2001)Ideal geometry (DNA, RNA) : Parkinson et al. (1996)
Validation Pipeline (wwPDB-VP) : rb-20031633
Page 2 Full wwPDB X-ray Structure Validation Report 4WSN
1 Overall quality at a glance i○
The following experimental techniques were used to determine the structure:X-RAY DIFFRACTION
The reported resolution of this entry is 5.50 Å.
Percentile scores (ranging between 0-100) for global validation metrics of the entry are shown inthe following graphic. The table shows the number of entries on which the scores are based.
Metric Whole archive(#Entries)
Similar resolution(#Entries, resolution range(Å))
Rfree 111664 1015 (7.20-3.80)Clashscore 122126 1090 (7.20-3.80)
Ramachandran outliers 120053 1020 (7.20-3.80)Sidechain outliers 120020 1010 (7.20-3.78)RSRZ outliers 108989 1025 (7.32-3.66)
The table below summarises the geometric issues observed across the polymeric chains and their fitto the electron density. The red, orange, yellow and green segments on the lower bar indicate thefraction of residues that contain outliers for >=3, 2, 1 and 0 types of geometric quality criteria. Agrey segment represents the fraction of residues that are not modelled. The numeric value for eachfraction is indicated below the corresponding segment, with a dot representing fractions <=5%The upper red bar (where present) indicates the fraction of residues that have poor fit to theelectron density. The numeric value is given above the bar.
Mol Chain Length Quality of chain
1 A 480
1 I 480
1 Q 480
1 Y 480
1 g 480Continued on next page...
Page 3 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Length Quality of chain
1 o 480
2 B 447
2 J 447
2 R 447
2 Z 447
2 h 447
2 p 447
3 C 427
3 K 427
3 S 427
3 a 427
3 i 427
3 q 427
4 D 410
4 L 410
4 T 410
4 b 410
4 j 410
4 r 410
5 E 325
5 M 325
5 U 325
5 c 325
5 k 325
5 s 325Continued on next page...
Page 4 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Length Quality of chain
6 F 331
6 N 331
6 V 331
6 d 331
6 l 331
6 t 331
7 G 222
7 O 222
7 W 222
7 e 222
7 m 222
7 u 222
8 H 213
8 P 213
8 X 213
8 f 213
8 n 213
8 v 213
Page 5 Full wwPDB X-ray Structure Validation Report 4WSN
2 Entry composition i○
There are 9 unique types of molecules in this entry. The entry contains 124428 atoms, of which 0are hydrogens and 0 are deuteriums.
In the tables below, the ZeroOcc column contains the number of atoms modelled with zero occu-pancy, the AltConf column contains the number of residues with at least one atom in alternateconformation and the Trace column contains the number of residues modelled with at most 2atoms.
• Molecule 1 is a protein called COP9 signalosome complex subunit 1.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
1 A 419 Total C N O S3348 2113 588 625 22 0 0 0
1 I 419 Total C N O S3348 2113 588 625 22 0 0 0
1 Q 419 Total C N O S3348 2113 588 625 22 0 0 0
1 Y 419 Total C N O S3348 2113 588 625 22 0 0 0
1 g 419 Total C N O S3348 2113 588 625 22 0 0 0
1 o 419 Total C N O S3348 2113 588 625 22 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceA 48 GLY - expression tag UNP Q13098A 49 GLY - expression tag UNP Q13098A 50 GLY - expression tag UNP Q13098A 51 ARG - expression tag UNP Q13098I 48 GLY - expression tag UNP Q13098I 49 GLY - expression tag UNP Q13098I 50 GLY - expression tag UNP Q13098I 51 ARG - expression tag UNP Q13098Q 48 GLY - expression tag UNP Q13098Q 49 GLY - expression tag UNP Q13098Q 50 GLY - expression tag UNP Q13098Q 51 ARG - expression tag UNP Q13098Y 48 GLY - expression tag UNP Q13098Y 49 GLY - expression tag UNP Q13098Y 50 GLY - expression tag UNP Q13098Y 51 ARG - expression tag UNP Q13098g 48 GLY - expression tag UNP Q13098
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Page 6 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
g 49 GLY - expression tag UNP Q13098g 50 GLY - expression tag UNP Q13098g 51 ARG - expression tag UNP Q13098o 48 GLY - expression tag UNP Q13098o 49 GLY - expression tag UNP Q13098o 50 GLY - expression tag UNP Q13098o 51 ARG - expression tag UNP Q13098
• Molecule 2 is a protein called COP9 signalosome complex subunit 2.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
2 B 403 Total C N O S3304 2102 566 621 15 0 0 0
2 J 403 Total C N O S3304 2102 566 621 15 0 0 0
2 R 403 Total C N O S3304 2102 566 621 15 0 0 0
2 Z 403 Total C N O S3304 2102 566 621 15 0 0 0
2 h 403 Total C N O S3304 2102 566 621 15 0 0 0
2 p 403 Total C N O S3304 2102 566 621 15 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceB -3 GLY - expression tag UNP P61201B -2 GLY - expression tag UNP P61201B -1 GLY - expression tag UNP P61201B 0 ARG - expression tag UNP P61201J -3 GLY - expression tag UNP P61201J -2 GLY - expression tag UNP P61201J -1 GLY - expression tag UNP P61201J 0 ARG - expression tag UNP P61201R -3 GLY - expression tag UNP P61201R -2 GLY - expression tag UNP P61201R -1 GLY - expression tag UNP P61201R 0 ARG - expression tag UNP P61201Z -3 GLY - expression tag UNP P61201Z -2 GLY - expression tag UNP P61201Z -1 GLY - expression tag UNP P61201
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Page 7 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
Z 0 ARG - expression tag UNP P61201h -3 GLY - expression tag UNP P61201h -2 GLY - expression tag UNP P61201h -1 GLY - expression tag UNP P61201h 0 ARG - expression tag UNP P61201p -3 GLY - expression tag UNP P61201p -2 GLY - expression tag UNP P61201p -1 GLY - expression tag UNP P61201p 0 ARG - expression tag UNP P61201
• Molecule 3 is a protein called COP9 signalosome complex subunit 3.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
3 C 401 Total C N O S3191 2032 535 598 26 0 0 0
3 K 401 Total C N O S3191 2032 535 598 26 0 0 0
3 S 401 Total C N O S3191 2032 535 598 26 0 0 0
3 a 401 Total C N O S3191 2032 535 598 26 0 0 0
3 i 401 Total C N O S3191 2032 535 598 26 0 0 0
3 q 401 Total C N O S3191 2032 535 598 26 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceC -3 GLY - expression tag UNP Q9UNS2C -2 GLY - expression tag UNP Q9UNS2C -1 GLY - expression tag UNP Q9UNS2C 0 ARG - expression tag UNP Q9UNS2K -3 GLY - expression tag UNP Q9UNS2K -2 GLY - expression tag UNP Q9UNS2K -1 GLY - expression tag UNP Q9UNS2K 0 ARG - expression tag UNP Q9UNS2S -3 GLY - expression tag UNP Q9UNS2S -2 GLY - expression tag UNP Q9UNS2S -1 GLY - expression tag UNP Q9UNS2S 0 ARG - expression tag UNP Q9UNS2a -3 GLY - expression tag UNP Q9UNS2
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Page 8 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
a -2 GLY - expression tag UNP Q9UNS2a -1 GLY - expression tag UNP Q9UNS2a 0 ARG - expression tag UNP Q9UNS2i -3 GLY - expression tag UNP Q9UNS2i -2 GLY - expression tag UNP Q9UNS2i -1 GLY - expression tag UNP Q9UNS2i 0 ARG - expression tag UNP Q9UNS2q -3 GLY - expression tag UNP Q9UNS2q -2 GLY - expression tag UNP Q9UNS2q -1 GLY - expression tag UNP Q9UNS2q 0 ARG - expression tag UNP Q9UNS2
• Molecule 4 is a protein called COP9 signalosome complex subunit 4.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
4 D 406 Total C N O S3251 2047 566 622 16 0 0 0
4 L 406 Total C N O S3251 2047 566 622 16 0 0 0
4 T 406 Total C N O S3251 2047 566 622 16 0 0 0
4 b 406 Total C N O S3251 2047 566 622 16 0 0 0
4 j 406 Total C N O S3251 2047 566 622 16 0 0 0
4 r 406 Total C N O S3251 2047 566 622 16 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceD -3 GLY - expression tag UNP Q9BT78D -2 GLY - expression tag UNP Q9BT78D -1 GLY - expression tag UNP Q9BT78D 0 ARG - expression tag UNP Q9BT78L -3 GLY - expression tag UNP Q9BT78L -2 GLY - expression tag UNP Q9BT78L -1 GLY - expression tag UNP Q9BT78L 0 ARG - expression tag UNP Q9BT78T -3 GLY - expression tag UNP Q9BT78T -2 GLY - expression tag UNP Q9BT78T -1 GLY - expression tag UNP Q9BT78
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Page 9 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
T 0 ARG - expression tag UNP Q9BT78b -3 GLY - expression tag UNP Q9BT78b -2 GLY - expression tag UNP Q9BT78b -1 GLY - expression tag UNP Q9BT78b 0 ARG - expression tag UNP Q9BT78j -3 GLY - expression tag UNP Q9BT78j -2 GLY - expression tag UNP Q9BT78j -1 GLY - expression tag UNP Q9BT78j 0 ARG - expression tag UNP Q9BT78r -3 GLY - expression tag UNP Q9BT78r -2 GLY - expression tag UNP Q9BT78r -1 GLY - expression tag UNP Q9BT78r 0 ARG - expression tag UNP Q9BT78
• Molecule 5 is a protein called COP9 signalosome complex subunit 5.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
5 E 298 Total C N O S2366 1510 393 450 13 0 0 0
5 M 298 Total C N O S2366 1510 393 450 13 0 0 0
5 U 298 Total C N O S2366 1510 393 450 13 0 0 0
5 c 298 Total C N O S2366 1510 393 450 13 0 0 0
5 k 298 Total C N O S2366 1510 393 450 13 0 0 0
5 s 298 Total C N O S2366 1510 393 450 13 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceE 10 GLY - expression tag UNP Q92905E 11 GLY - expression tag UNP Q92905E 12 GLY - expression tag UNP Q92905E 13 ARG - expression tag UNP Q92905M 10 GLY - expression tag UNP Q92905M 11 GLY - expression tag UNP Q92905M 12 GLY - expression tag UNP Q92905M 13 ARG - expression tag UNP Q92905U 10 GLY - expression tag UNP Q92905
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Page 10 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
U 11 GLY - expression tag UNP Q92905U 12 GLY - expression tag UNP Q92905U 13 ARG - expression tag UNP Q92905c 10 GLY - expression tag UNP Q92905c 11 GLY - expression tag UNP Q92905c 12 GLY - expression tag UNP Q92905c 13 ARG - expression tag UNP Q92905k 10 GLY - expression tag UNP Q92905k 11 GLY - expression tag UNP Q92905k 12 GLY - expression tag UNP Q92905k 13 ARG - expression tag UNP Q92905s 10 GLY - expression tag UNP Q92905s 11 GLY - expression tag UNP Q92905s 12 GLY - expression tag UNP Q92905s 13 ARG - expression tag UNP Q92905
• Molecule 6 is a protein called COP9 signalosome complex subunit 6.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
6 F 288 Total C N O S2263 1445 375 428 15 0 0 0
6 N 288 Total C N O S2263 1445 375 428 15 0 0 0
6 V 288 Total C N O S2263 1445 375 428 15 0 0 0
6 d 288 Total C N O S2263 1445 375 428 15 0 0 0
6 l 288 Total C N O S2263 1445 375 428 15 0 0 0
6 t 288 Total C N O S2263 1445 375 428 15 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceF -3 GLY - expression tag UNP Q7L5N1F -2 GLY - expression tag UNP Q7L5N1F -1 GLY - expression tag UNP Q7L5N1F 0 ARG - expression tag UNP Q7L5N1N -3 GLY - expression tag UNP Q7L5N1N -2 GLY - expression tag UNP Q7L5N1N -1 GLY - expression tag UNP Q7L5N1
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Page 11 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
N 0 ARG - expression tag UNP Q7L5N1V -3 GLY - expression tag UNP Q7L5N1V -2 GLY - expression tag UNP Q7L5N1V -1 GLY - expression tag UNP Q7L5N1V 0 ARG - expression tag UNP Q7L5N1d -3 GLY - expression tag UNP Q7L5N1d -2 GLY - expression tag UNP Q7L5N1d -1 GLY - expression tag UNP Q7L5N1d 0 ARG - expression tag UNP Q7L5N1l -3 GLY - expression tag UNP Q7L5N1l -2 GLY - expression tag UNP Q7L5N1l -1 GLY - expression tag UNP Q7L5N1l 0 ARG - expression tag UNP Q7L5N1t -3 GLY - expression tag UNP Q7L5N1t -2 GLY - expression tag UNP Q7L5N1t -1 GLY - expression tag UNP Q7L5N1t 0 ARG - expression tag UNP Q7L5N1
• Molecule 7 is a protein called COP9 signalosome complex subunit 7a.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
7 G 208 Total C N O S1631 1028 287 312 4 0 0 0
7 O 208 Total C N O S1631 1028 287 312 4 0 0 0
7 W 208 Total C N O S1631 1028 287 312 4 0 0 0
7 e 208 Total C N O S1631 1028 287 312 4 0 0 0
7 m 208 Total C N O S1631 1028 287 312 4 0 0 0
7 u 208 Total C N O S1631 1028 287 312 4 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceG -3 GLY - expression tag UNP Q9UBW8G -2 GLY - expression tag UNP Q9UBW8G -1 GLY - expression tag UNP Q9UBW8G 0 ARG - expression tag UNP Q9UBW8O -3 GLY - expression tag UNP Q9UBW8
Continued on next page...
Page 12 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
O -2 GLY - expression tag UNP Q9UBW8O -1 GLY - expression tag UNP Q9UBW8O 0 ARG - expression tag UNP Q9UBW8W -3 GLY - expression tag UNP Q9UBW8W -2 GLY - expression tag UNP Q9UBW8W -1 GLY - expression tag UNP Q9UBW8W 0 ARG - expression tag UNP Q9UBW8e -3 GLY - expression tag UNP Q9UBW8e -2 GLY - expression tag UNP Q9UBW8e -1 GLY - expression tag UNP Q9UBW8e 0 ARG - expression tag UNP Q9UBW8m -3 GLY - expression tag UNP Q9UBW8m -2 GLY - expression tag UNP Q9UBW8m -1 GLY - expression tag UNP Q9UBW8m 0 ARG - expression tag UNP Q9UBW8u -3 GLY - expression tag UNP Q9UBW8u -2 GLY - expression tag UNP Q9UBW8u -1 GLY - expression tag UNP Q9UBW8u 0 ARG - expression tag UNP Q9UBW8
• Molecule 8 is a protein called COP9 signalosome complex subunit 8.
Mol Chain Residues Atoms ZeroOcc AltConf Trace
8 H 173 Total C N O S1383 885 240 254 4 0 0 0
8 P 173 Total C N O S1383 885 240 254 4 0 0 0
8 X 173 Total C N O S1383 885 240 254 4 0 0 0
8 f 173 Total C N O S1383 885 240 254 4 0 0 0
8 n 173 Total C N O S1383 885 240 254 4 0 0 0
8 v 173 Total C N O S1383 885 240 254 4 0 0 0
There are 24 discrepancies between the modelled and reference sequences:
Chain Residue Modelled Actual Comment ReferenceH -3 GLY - expression tag UNP Q99627H -2 GLY - expression tag UNP Q99627H -1 GLY - expression tag UNP Q99627
Continued on next page...
Page 13 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Chain Residue Modelled Actual Comment Reference
H 0 ARG - expression tag UNP Q99627P -3 GLY - expression tag UNP Q99627P -2 GLY - expression tag UNP Q99627P -1 GLY - expression tag UNP Q99627P 0 ARG - expression tag UNP Q99627X -3 GLY - expression tag UNP Q99627X -2 GLY - expression tag UNP Q99627X -1 GLY - expression tag UNP Q99627X 0 ARG - expression tag UNP Q99627f -3 GLY - expression tag UNP Q99627f -2 GLY - expression tag UNP Q99627f -1 GLY - expression tag UNP Q99627f 0 ARG - expression tag UNP Q99627n -3 GLY - expression tag UNP Q99627n -2 GLY - expression tag UNP Q99627n -1 GLY - expression tag UNP Q99627n 0 ARG - expression tag UNP Q99627v -3 GLY - expression tag UNP Q99627v -2 GLY - expression tag UNP Q99627v -1 GLY - expression tag UNP Q99627v 0 ARG - expression tag UNP Q99627
• Molecule 9 is ZINC ION (three-letter code: ZN) (formula: Zn).
Mol Chain Residues Atoms ZeroOcc AltConf
9 k 1 Total Zn1 1 0 0
9 E 1 Total Zn1 1 0 0
9 c 1 Total Zn1 1 0 0
9 U 1 Total Zn1 1 0 0
9 s 1 Total Zn1 1 0 0
9 M 1 Total Zn1 1 0 0
Page 14 Full wwPDB X-ray Structure Validation Report 4WSN
3 Residue-property plots i○
These plots are drawn for all protein, RNA and DNA chains in the entry. The first graphic fora chain summarises the proportions of the various outlier classes displayed in the second graphic.The second graphic shows the sequence view annotated by issues in geometryand electron density.Residues are color-coded according to the number of geometric quality criteria for which theycontain at least one outlier: green = 0, yellow = 1, orange = 2 and red = 3 or more. A red dotabove a residue indicates a poor fit to the electron density (RSRZ > 2). Stretches of 2 or moreconsecutive residues without any outlier are shown as a green connector. Residues present in thesample, but not in the model, are shown in grey.
• Molecule 1: COP9 signalosome complex subunit 1
Chain A:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77
E78•
L82•
Y87•
L94
E98
H106
C107•
L115•
F126•
N127
V128•
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160•
R171
D182
H207•
Y208
L209
A217
Y221•
S222
R223•
A224
R225•
D226
Y227•
I242
V254
V258
T264
P265
D275
S276
A280
C287•
A288
A289
L294
A309•
D312
H313
C314
D315•
L319•
L320•
L342
L381
L390•
A395
P396
Y402
R408
S415
P416
I449•
L460•
R468
L477
E481
A486
L496
R497
N498
S504
P505
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 1: COP9 signalosome complex subunit 1
Chain I:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77
E78•
L82•
Y87•
L94
E98
R99
L100•
I103•
H106
C107•
L110•
R111•
A114•
L115•
A118•
F121•
F126•
N127•
V128•
Y131•
A148
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160•
A161•
L162•
R171
D182
K189•
S196•
I197•
Y208
L209
A217
R223•
A224•
R225•
D226•
Y227•
I242
V254
V258
T264
P265
D275
S276
A280
C287•
A288
A289
L294
A309•
D312
H313
C314
D315
L319•
L320•
L342
V346•
L381
L390•
A395
P396
Y402
R408
S415
P416
L477
E481
F482
A486
N498
P505
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 1: COP9 signalosome complex subunit 1
Chain Q:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77•
L82•
Y87•
L94
E98
R111•
A114•
L115•
K116
M117•
A118•
L119•
S120
F121•
V128•
A148
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160•
A161•
L162•
R171
D182
K194•
E195
S196•
H207•
Y208
L209
A217
R223•
A224
R225•
D226•
Y227•
V234•
M237•
C238•
I242
V254
T264
P265
D275
S276
A280
C287•
L294
L307•
L308
A309•
D312
H313
C314
D315
L319•
L320•
Page 15 Full wwPDB X-ray Structure Validation Report 4WSN
G329•
L342
L381
L390•
A395
P396
Y402
R408
S415
P416
I444
L477
E481
A486
N498
P505
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 1: COP9 signalosome complex subunit 1
Chain Y:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77
E78•
N79•
L82•
Y87•
L94
E98
Q101•
P108
T109
A114•
F126•
N127
V128
I134•
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160•
R171
D182
R198•
H207•
Y208
L209
A217
Y221•
R225•
D226
Y227•
A231•
I242
V254
T264
P265
D275
S276
A280
C287
L294
A309•
D312
H313
C314
D315•
L342
L381
A395
P396
Y402
R408
S415
P416
A420•
L477
E481
L496
R497
N498
P505
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 1: COP9 signalosome complex subunit 1
Chain g:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77
L82•
D83
L84•
Y87•
L94
I97•
L100•
H106
L115•
F126•
N127•
H135•
L138•
A141•
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160
D182
L185•
Y188•
K189•
Y208
R225•
D226
C238•
T264
E269•
D275
S276
C287
L291•
L294
A309•
C314
D315
L319•
L342
V346•
R408
A420•
N498
S504•
P505•
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 1: COP9 signalosome complex subunit 1
Chain o:
GLY
GLY
GLY
ARG
GLY
ALA
VAL
GLU
PRO
MET
GLN
ILE
ASP
VAL
ASP
PRO
GLN
GLU
ASP
PRO
GLN
ASN
ALA
PRO
ASP
VAL
ASN
TYR
VAL
V77
E78•
Y87•
L94
T109•
L110•
A118•
F126•
P149
ASP
ALA
ILE
PRO
GLU
SER
GLY
VAL
GLU
PRO
P160•
D182
K189•
S192•
I193
K194•
Y208
D226
Y227•
T264
E269•
D275
S276
C287•
L294
C314
D315
L319•
L320•
L342
R408
M489•
N498
P505
PRO
ARG
GLU
GLY
SER
GLN
GLY
GLU
LEU
THR
PRO
ALA
ASN
SER
GLN
SER
ARG
MET
SER
THR
ASN
MET
• Molecule 2: COP9 signalosome complex subunit 2
Chain B:
GLY
GLY
GLY
ARG
MET
SER
ASP
MET
GLU
ASP
ASP
PHE
MET
CYS
ASP
ASP
GLU
GLU
ASP
TYR
ASP
LEU
GLU
TYR
SER
GLU
ASP
SER
ASN
SER
GLU
PRO
ASN
V30
K43
E44
L51•
E61
A71•
F80•
N84
F85
Y92•
S101
A102
K123•
F131•
D141
Page 16 Full wwPDB X-ray Structure Validation Report 4WSN
N144
R162
Q180
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
Q208
K209
N210•
I228
P229
H230
P231
I237•
R238
E239•
C240•
G241•
R247
F259•
R272
C276
L277•
K278•
Y279
L280•
V281•
L282•
A283
M287
K288
S289
N292•
P293•
F294•
D295
S296•
Q297
E298•
A299•
I308•
M311•
V315
F342
N396
H413
Q414
K415
R416
G417
A443
• Molecule 2: COP9 signalosome complex subunit 2
Chain J:
GLY
GLY
GLY
ARG
MET
SER
ASP
MET
GLU
ASP
ASP
PHE
MET
CYS
ASP
ASP
GLU
GLU
ASP
TYR
ASP
LEU
GLU
TYR
SER
GLU
ASP
SER
ASN
SER
GLU
PRO
ASN
V30•
K43
E44
F54•
E61
W67•
N84
F85
S101
A102
K123
D141
A142
K143•
N144
R162
Q180
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
Q208
K212•
I228
P229
H230
P231
I237•
R238
E239
R247
F259•
R272
C276
L277•
K278•
Y279
L280•
V281
L282•
A283
M287
K288
S289
N292•
P293•
S296•
Q297
E298•
A299•
Y302•
I308•
L309•
A310
M311•
V315
F342
N396
E410•
H413
Q414
K415
R416
G417
N435
K441
L442
A443
• Molecule 2: COP9 signalosome complex subunit 2
Chain R:
GLY
GLY
GLY
ARG
MET
SER
ASP
MET
GLU
ASP
ASP
PHE
MET
CYS
ASP
ASP
GLU
GLU
ASP
TYR
ASP
LEU
GLU
TYR
SER
GLU
ASP
SER
ASN
SER
GLU
PRO
ASN
V30
K43
E44
E61
L72•
K77•
F80•
K81•
N84
F85
S101
A102
K123
F131•
D141
N144
R162
L175•
Q180
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
E201•
Q208
I228
P229
H230
P231
I237•
R238
E239
R247
F259•
R272
R273
T274•
T275
C276
L277•
K278•
Y279•
L280
V281•
L282
A283
M287
K288
S289
N292•
P293•
S296
Q297
E298•
K303
I308
M311•
T312•
V315
F342
N396
G400•
H413
Q414
K415
R416
G417
A443
• Molecule 2: COP9 signalosome complex subunit 2
Chain Z:
GLY
GLY
GLY
ARG
MET
SER
ASP
MET
GLU
ASP
ASP
PHE
MET
CYS
ASP
ASP
GLU
GLU
ASP
TYR
ASP
LEU
GLU
TYR
SER
GLU
ASP
SER
ASN
SER
GLU
PRO
ASN
V30•
K43
E44
L51•
F54•
Q55•
E61
M75•
N84
F85
Y92•
S101
A102
S111•
K123
F131•
D141
N144•
R162
Q180•
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
E201•
I202•
Q208
I228
P229
H230
P231
I237•
R238
E239•
C240•
G241•
R247
F258•
F259•
F262•
R272
C276
L277•
V281•
L282
A283
M287
K288
S289
N292•
P293•
S296
Q297
E298•
I308•
L309•
A310•
M311•
V315
F342
N396
H413
Q414
K415
R416
G417
L442•
A443
• Molecule 2: COP9 signalosome complex subunit 2
Page 17 Full wwPDB X-ray Structure Validation Report 4WSN
Chain h:GL
YGL
YGL
YAR
GME
TSE
RAS
PME
TGL
UAS
PAS
PPH
EME
TCY
SAS
PAS
PGL
UGL
UAS
PTY
RAS
PLE
UGL
UTY
RSE
RGL
UAS
PSE
RAS
NSE
RGL
UPR
OAS
NV3
0
K43
P47•
L51•
F54•
E61
W67•
A71•
F80•
K81•
L82•
T83
N84
I115•
I119•
F131•
K143•
R162
H176•
Q180
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
L194•
Q208
K209•
S221•
P229
H230
P231
I237•
R238
E239•
R247
F258•
F259•
F262•
S289
P293•
F294•
D295
S296
Q297
E298•
A299•
F342
N396
H413
Q414
A443
• Molecule 2: COP9 signalosome complex subunit 2
Chain p:
GLY
GLY
GLY
ARG
MET
SER
ASP
MET
GLU
ASP
ASP
PHE
MET
CYS
ASP
ASP
GLU
GLU
ASP
TYR
ASP
LEU
GLU
TYR
SER
GLU
ASP
SER
ASN
SER
GLU
PRO
ASN
V30
N34•
K43
E44
F54•
E61
A71•
M75•
N79•
F80•
K81•
L82•
T83
N84
Y92•
I119•
F131•
A142•
K143•
R162
H176•
Q180
THR
ASP
ASP
GLY
GLU
ASP
ASP
LEU
LYS
LYS
GLY
T192
Q193
L194•
Q208
P229
H230
P231
E239•
R247
F258•
L277•
K278
Y279•
S289
P293•
S296
Q297
E298•
M311•
F342
N396
G400•
H413
Q414
L442•
A443
• Molecule 3: COP9 signalosome complex subunit 3
Chain C:
GLY
GLY
GLY
ARG
MET
ALA
S3 V9 V12•
I28•
S31•
G32
E33
L42
L46
G47
A48
V51
Q52
E53•
H54•
S55•
V64
S70
V71
S86
T87
C88
N89
G90
E91
R94
R114
P117
L118
R119
L124
A127•
M131•
N136
Q137
L138
A152
K153
C154
M166
M167
C170•
K171
E172
A175
A178•
F181•
A215
L221
Y260•
M292
V295
L317•
S329
M341
I347
V358•
D362
N363
P364
E365
K366
Y367
P370
A371
M372
D377
L386
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
SER
• Molecule 3: COP9 signalosome complex subunit 3
Chain K:
GLY
GLY
GLY
ARG
MET
ALA
S3 V9 V12•
I28•
E33
L39•
L42
G47
V51
Q52•
E53•
H54•
V64
K65•
S70
V71
S86
T87
C88
N89
G90
E91
H92•
I93
R94
Y95•
R114
P117
L124
M131•
N136
Q137
L138
A152
K153
C154
M166
M167
E172
L221
Y260•
M292
V295
L299•
Y303•
I307•
S329
M341
I347
D362
N363
P364
E365
K366
Y367
M372
L386
V399•
N400
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
Page 18 Full wwPDB X-ray Structure Validation Report 4WSN
SER
• Molecule 3: COP9 signalosome complex subunit 3
Chain S:
GLY
GLY
GLY
ARG
MET
ALA
S3 A4 L5•
V9 L24•
E33
L42
G47
V51
Q52
E53•
H54•
V64
S70
V71
S86
T87
C88
N89
G90
E91•
H92•
I93
R94
R114
P117
L118•
L124
M131•
N136
Q137
L138•
T139•
A152
K153
C154
M166
M167
C170•
K171
E172
F181•
L221
V249
I253
Y260•
M292
V295
Y303•
T313
S329
M341
I347
Q353•
D362
N363
P364
E365
K366
Y367
M372
L386
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
SER
• Molecule 3: COP9 signalosome complex subunit 3
Chain a:
GLY
GLY
GLY
ARG
MET
ALA
S3 V9•
L27•
I28•
E33•
L39•
G47
V51
Q52
E53•
H54•
V58•
V71
I85•
S86
N89
G90
E91
A96•
R114
P117
L124
M131•
N136
T139•
S140•
I141
H142•
M167
C170•
K171
E172
A175
F181•
P212
S217•
L221
Y260•
N270•
I307•
S329
I347•
F348
A349•
D362
N363
P364
E365
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
SER
• Molecule 3: COP9 signalosome complex subunit 3
Chain i:
GLY
GLY
GLY
ARG
MET
ALA
S3 F8•
V12•
E33
G47
V51
Q52
E53•
H54•
V71
S86
N89
G90
E91
T99•
R114
P117
L124
N136
Q137
L138•
T139•
M167
E172
A175
Y176•
F181•
L221
K226•
Y260•
P272•
Y303•
S329
A349•
D362
N363
P364
E365
P370
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
SER
• Molecule 3: COP9 signalosome complex subunit 3
Chain q:
GLY
GLY
GLY
ARG
MET
ALA
S3 E33
G47
V51
Q52
E53•
H54•
S55
L56•
P69•
S70
V71
S86
N89
G90
E91
R94•
R114
P117
L124
M131•
N136
M167
E172
A175
F181•
T211•
L221
Y260•
P272•
I307•
V326•
S329
D362
N363
P364
E365
P401
Q402
F403
VAL
GLN
LYS
SER
MET
GLY
SER
GLN
GLU
ASP
ASP
SER
GLY
ASN
LYS
PRO
SER
SER
TYR
SER
• Molecule 4: COP9 signalosome complex subunit 4
Chain D:
Page 19 Full wwPDB X-ray Structure Validation Report 4WSN
GLY
GLY
GLY
ARG
M1 A4•
V5 R6•
Q7•
D8•
L9•
A10•
Q11•
L12•
M13•
N14
S15•
S16•
G17•
L22
Y26•
I34•
E40
V49•
E55
L66•
F69•
C70•
T71
H72•
E83
I84•
Y85•
H86•
F87
T88•
K91•
I92•
E100
L110•
A111•
R121
N122
A123•
A124•
Q125•
V126•
L127•
Y139•
N140
Y143•
K144•
L145•
E146
T147•
Y148•
L149
K150•
I151•
A152•
R153
L154•
Y155
L156•
D159
D160
P161•
E165•
L174•
T179
Y187
K188•
V189•
C190•
R193•
V194•
L195
D196•
Y197•
I202
I216•
L226•
K227
H228
A229
L230•
H231•
C232
T233•
M245
L246•
R254•
L264
L269
R274
G275
N276
M286
A294
N308
N318•
L327
L328
E329
F351
E362
T363
R364
E365
A366
L385
E394
A399
Q406
• Molecule 4: COP9 signalosome complex subunit 4
Chain L:
GLY
GLY
GLY
ARG
M1 L9•
L22•
Y26•
R27•
Q28
I29•
L30•
E31
K32•
A33
I34•
E40
F48•
V49•
L66•
F69•
C70•
T71
H72
D78•
E83
I84
Y85•
T88•
K91
Q108•
H109
L110•
A111•
R121•
L132•
K144•
L145•
E146
T147•
Y148•
L149
K150•
I151•
A152•
R153•
L154
Y155•
L156•
D159
Y167•
R170•
L174•
Q175
N176
E177•
S178
T179
Y187
K188•
V189•
C190•
Y191
A192•
R193•
Y197•
I202
R207•
Y208
N209•
E210
L211•
K214•
L223•
L226•
K227
H228
A229
L230•
L235•
M245
R254•
A260•
L264
R274
G275
N276
M286
A294
N308
L328
E329
F351
E362
E365
A366
S376•
L385
E394
A399
Q406
• Molecule 4: COP9 signalosome complex subunit 4
Chain T:
GLY
GLY
GLY
ARG
M1 L12•
M13
N14•
S15•
H19•
L22•
A23•
Y26•
R27•
Q28
I29•
L30•
E31
K32•
A33
I34•
S37
E40
F48•
V49•
M52•
S58
L59
V60
I61•
S62•
L66•
H72
T80•
E83
I84•
Y85
H86•
F87
T88•
L89•
E90
K91
F99•
R121•
A124•
N140
V141
L145•
Y148•
L149
K150•
I151•
A152•
R153
L154•
Y155•
D159
D160
P161•
L174•
S178•
T179
Y187
K188•
V189•
C190•
I202
R207•
L211•
L226•
K227
H228•
A229•
L230
H231•
M245
R254
A260•
L264
L269
R274
G275
N276
M286
A294
N308
L328
E329
G350•
F351•
E362
E365
A366
I374
E394
Q406
• Molecule 4: COP9 signalosome complex subunit 4
Chain b:
GLY
GLY
GLY
ARG
M1•
A2•
A3•
L9•
A10
Q11•
L12•
M13•
N14•
S15•
L22
Y26•
L30•
A33•
I34•
S37•
G38•
A39•
E40•
Q41•
L42•
E43
A44•
L45•
F48•
V49•
E50
A51•
M52•
V53•
N54
E55
N56•
V57•
I61•
Q64•
L65•
H72•
N75•
L76•
P77•
D78•
S79•
T80•
A81•
K82•
E83
H86•
F87
T88•
L89•
E90
K91•
I92•
S98•
F99•
V103•
R107•
Q108•
I113•
Y114
E115•
R121
L127•
Q138•
Y139•
Y143•
K144
L145•
E146•
T147•
Y148
L149•
K150•
I151
A152•
L156•
D159
Q163•
A164•
I168•
S172•
L173•
L174•
Q175
N176•
L183•
Q184
I185•
H186
Y187•
K188•
V189
C190•
Y191•
A192•
R193•
V194•
I202
L211•
S212
Y213•
H228
M245
L249•
L264
R274
G275
N276
M286
A294•
F351
E362
A366
E394
Q406
Page 20 Full wwPDB X-ray Structure Validation Report 4WSN
• Molecule 4: COP9 signalosome complex subunit 4
Chain j:
GLY
GLY
GLY
ARG
M1•
A2 A3•
A4•
V5•
R6•
Q7•
S16•
G17•
L22
I34•
Q35
L36•
E40
Q41•
L45•
F48•
V49•
V57•
S58•
L59•
V60•
I61•
S62•
R63•
Q64
L65•
L66•
F69•
C70•
T71
H72
L73•
L76•
E83
I84
Y85•
H86
F87•
T88•
L89•
E90
K91•
S98•
F99•
E100
E101
Q102•
V103•
I106•
R107•
Q108•
R121
N122
A123•
A124•
L127•
L132•
Q138•
Y139•
Y143•
K144
L145•
L149
R153•
L156•
D159
I168•
N169
R170•
C190•
Y191•
V194•
I202
L211•
K227
H228
M245
A260•
I272
I273
R274
G275
N276
M286
A294
F351
E362
A366
E394
Q406
• Molecule 4: COP9 signalosome complex subunit 4
Chain r:
GLY
GLY
GLY
ARG
M1•
A2•
A3•
A4•
V5•
R6 Q7•
D8•
S15•
S16•
G17•
L22
K32•
A33
I34•
Q35
L36•
E40
L45•
F48•
M52•
N56•
V57•
S58•
I61•
S62•
L66•
F69•
C70•
T71
H72
E83
I84
Y85•
T88•
L89•
E90•
K91•
S98•
F99•
V103•
A104
S105
I106•
R107•
R121
N122
A123•
A124•
L127•
I130•
P131
L132•
Q138•
Y143•
K144
L145•
E146
T147•
Y148
L149
L156•
D159
D160
P161•
A164•
Y167•
I168•
I185•
V189•
C190•
V194•
I202
L211•
H228
M245
L258•
A259
A260•
R274
G275
N276
M286
A294
F351
E362
A366
E394
Q406
• Molecule 5: COP9 signalosome complex subunit 5
Chain E:
GLY
GLY
GLY
ARG
GLU
LEU
ALA
ASN
ASN
MET
GLN
GLU
ALA
GLN
S24
Y29•
K43
H49•
A59•
V77
M78•
K84•
V85•
P99•
V100•
T103•
N108•
A109•
Q110•
Y116
A124
R129
L130
E131•
H140
W146•
L147•
E163
P164
F165
V166•
A167•
V168•
T173
F186•
R187•
T188•
Y189•
P190•
P195
E198
G199
P200
S201
E202•
T205•
Y261
Q265
V266
F267
L280
G281
R282
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296•
I333
SER
• Molecule 5: COP9 signalosome complex subunit 5
Chain M:
GLY
GLY
GLY
ARG
GLU
LEU
ALA
ASN
ASN
MET
GLN
GLU
ALA
GLN
S24
Y29•
K43
H49•
H50•
V77•
M78•
K84•
V85•
V100•
T103•
A109•
Q110•
Y116
A124
R129•
L130
E131•
W136•
H140
Y143•
W146•
L147•
E163
P164
F165
V166•
A167•
T173
R174
T175
V181
F186•
R187
T188•
Y189•
P190•
Y193
K194
P195•
E198
G199
P200•
S201
Y261
Q265
V266
F267
K272•
L280
G281
R282
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296•
I333
SER
• Molecule 5: COP9 signalosome complex subunit 5
Page 21 Full wwPDB X-ray Structure Validation Report 4WSN
Chain U:GL
YGL
YGL
YAR
GGL
ULE
UAL
AAS
NAS
NME
TGL
NGL
UAL
AGL
NS2
4
Y29•
K43
L63
V77
M78•
K84•
V85•
P99•
T103•
N108•
A109•
Q110•
Y116
Y120
A124
R129
L130
E131•
W136•
H140
W146•
E163
P164
F165
V166•
A167•
T173
R174
T175
I176
V181
F186•
R187•
T188•
Y189•
P190•
P195•
P196•
D197•
E198•
G199
P200•
S201•
Y261
Q265
V266
F267
K272•
L280
G281
R282•
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296•
E297•
K324
I333
SER
• Molecule 5: COP9 signalosome complex subunit 5
Chain c:
GLY
GLY
GLY
ARG
GLU
LEU
ALA
ASN
ASN
MET
GLN
GLU
ALA
GLN
S24•
K43
V77
M78•
K84•
V85•
M90•
D94•
S95•
L98•
P99•
V100•
T103•
A109•
S139•
H140
L147•
E163
P164
F165
V166
A167•
T173
A185•
F186•
R187•
T188•
Y189•
E198
G199
P200
S201
F267
G281
R282
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296•
I333
SER
• Molecule 5: COP9 signalosome complex subunit 5
Chain k:
GLY
GLY
GLY
ARG
GLU
LEU
ALA
ASN
ASN
MET
GLN
GLU
ALA
GLN
S24•
Y29•
K43
H49•
H50•
V77
M78•
K84•
V85•
D86•
T103•
W136•
H140
W146•
L147•
E163
P164
F165
V166
A167•
T173
F186•
R187•
T188•
E198
G199
P200
S201•
E202•
Y221•
F267
S270•
G281
R282
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296
I333
SER
• Molecule 5: COP9 signalosome complex subunit 5
Chain s:
GLY
GLY
GLY
ARG
GLU
LEU
ALA
ASN
ASN
MET
GLN
GLU
ALA
GLN
S24
Y29•
K30
Y31•
K43
F52•
V77
M78•
V85•
M90•
L98•
P99•
V100•
T103•
A109•
Q110•
E131•
W136•
H140
W146•
L147•
E163
P164
F165
V166
A167•
T173
R187•
T188•
E198
G199
P200
S201•
E202•
Y221•
T263•
F267
G281
R282
G283
SER
PHE
MET
LEU
GLY
LEU
GLU
THR
HIS
ASP
ARG
LYS
S296
I333
SER
• Molecule 6: COP9 signalosome complex subunit 6
Chain F:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
T36
R57
R79
L90•
I98•
E110
Q111
F112
K113
Q114
E120
N155
P164
D173•
I174
A179•
T187•
Y188
T189•
L190
A191•
E213•
N214
S215•
T216
V217
A218
R234
L237
A244
V250
L257•
Y261•
L267
P268
T272
D285
N303
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
Page 22 Full wwPDB X-ray Structure Validation Report 4WSN
• Molecule 6: COP9 signalosome complex subunit 6
Chain N:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
T36
G37
S38•
E88•
E110
Q111
F112
K113
Q114
E120
P131•
D135•
N155
K159•
P164
D173•
I174•
M181•
L182
F183•
T187•
A191•
V203
N214
V217
A218
R234
L237
A244
V250
P251
F252•
L267
P268
D285
K297
N303
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
• Molecule 6: COP9 signalosome complex subunit 6
Chain V:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
T36•
L46
R79
S86•
F87•
E88•
L89•
I98•
K108•
E109
E110
Q111
F112
K113
Q114
E120
P131•
D135•
N155
P164
I174•
M181•
L182•
F183•
T187•
E194
M206•
T207•
A208•
S211•
G212•
E213
N214
V217
A218
A244
V250
P251
F252•
L267
P268
D285
N303
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
• Molecule 6: COP9 signalosome complex subunit 6
Chain d:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
T36
F112
E120
K159•
F183•
T187•
Y188
T189•
L190
A191•
N214
V217
Y241•
V242•
L267
P268
D285
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
• Molecule 6: COP9 signalosome complex subunit 6
Chain l:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
T36•
G37•
S38•
V39
S40•
E88•
F112
E120
E147•
E169•
S170•
M181•
L182•
F183•
T187•
T207•
A208•
T209
G210•
S211•
G212•
E213
N214
L267
P268
D285
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
• Molecule 6: COP9 signalosome complex subunit 6
Chain t:
GLY
GLY
GLY
ARG
MET
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
ALA
THR
ASN
GLY
THR
GLY
GLY
SER
SER
GLY
MET
GLU
VAL
ASP
ALA
ALA
VAL
VAL
PRO
S29
V35•
T36•
G37•
S40•
Q67•
V68•
I69•
L89•
F112
E120
E169•
S170•
M181•
L182
F183•
T187•
Y188
T189•
Page 23 Full wwPDB X-ray Structure Validation Report 4WSN
M206•
T207•
A208•
T209•
G210•
S211•
G212•
E213
N214
L257•
C264•
L267
P268
D285
Q316
GLY
ILE
GLY
ARG
ARG
MET
ARG
GLY
LEU
PHE
PHE
• Molecule 7: COP9 signalosome complex subunit 7a
Chain G:
GLY
GLY
GLY
ARG
MET
SER
ALA
GLU
VAL
LYS
VAL
T8 A19•
G24
I31•
L35•
Y41•
V42
F43•
L46•
L47•
L55
T63•
L66•
L67•
F70•
A71
Y72
L88•
N94
H98
V102
C110
I111
P112
R126
L141
G159•
R160•
D161
L167
T173
A195•
N196•
Q202
N215
LEU
LYS
LYS
• Molecule 7: COP9 signalosome complex subunit 7a
Chain O:
GLY
GLY
GLY
ARG
MET
SER
ALA
GLU
VAL
LYS
VAL
T8 G24
I31•
L35•
F43•
L46•
L55
T63•
L66•
L67•
F70•
A71
Y72
Y78•
Q92•
K93
N94
H98
V102
C110
I111
P112
D139•
V140
L141
R142•
G159•
R160•
D161
L167
I170•
T173
N196•
Q202
N215
LEU
LYS
LYS
• Molecule 7: COP9 signalosome complex subunit 7a
Chain W:
GLY
GLY
GLY
ARG
MET
SER
ALA
GLU
VAL
LYS
VAL
T8•
G24
I31•
H32•
L35•
F43•
L46•
L55
T63•
F64•
R65
L66•
L67•
F70•
A71
Y72
N94
H98
V102
K107
C110
D139•
V140
L141
D161
L167
I170•
T173
A195•
Q202
N215•
LEU
LYS
LYS
• Molecule 7: COP9 signalosome complex subunit 7a
Chain e:
GLY
GLY
GLY
ARG
MET
SER
ALA
GLU
VAL
LYS
VAL
T8•
L27•
I31•
L35•
F43•
L46•
T63•
F70•
A71
Y72
H98
C110
R160•
D161
L167
I170•
T173
N196•
Q202
N215
LEU
LYS
LYS
• Molecule 7: COP9 signalosome complex subunit 7a
Chain m:
GLY
GLY
GLY
ARG
MET
SER
ALA
GLU
VAL
LYS
VAL
T8 F15•
L18•
A19•
K23•
I31•
L46•
F70•
A71
Y72
H98
C110
D161
L167
T173
A195•
Q202
N215
LEU
LYS
LYS
• Molecule 7: COP9 signalosome complex subunit 7a
Page 24 Full wwPDB X-ray Structure Validation Report 4WSN
Chain u:GL
YGL
YGL
YAR
GME
TSE
RAL
AGL
UVA
LLY
SVA
LT8•
A19•
L46•
F70•
A71
Y72
H98
C110
R160•
D161
L167
I170•
T173
H198•
Q202
N215
LEU
LYS
LYS
• Molecule 8: COP9 signalosome complex subunit 8
Chain H:
GLY
GLY
GLY
ARG
MET
PRO
VAL
ALA
VAL
MET
ALA
GLU
SER
ALA
F11
E24•
G29
G30
T33
Y37•
G38•
Q39•
L46•
H47
N48
R59
E70
L71•
V77•
G78•
Q79
R80
T92•
V102
Q103
P104
I105•
M106
L109•
T113•
D132
F133•
E142
V162•
R165
K166
P167•
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
Y203
N209
• Molecule 8: COP9 signalosome complex subunit 8
Chain P:
GLY
GLY
GLY
ARG
MET
PRO
VAL
ALA
VAL
MET
ALA
GLU
SER
ALA
F11
S12
F13•
G30•
T33
Y37•
G38•
Q39•
L40
L41•
A42•
L45•
L46
H47
N48
R59
E70
L71•
I74•
R80
H96•
V102
Q103
P104
I105•
M106
L109•
I128•
D132
F133•
E142
W153•
Q154
L163
P164
R165
K166
P167
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
L207
E208
N209•
• Molecule 8: COP9 signalosome complex subunit 8
Chain X:
GLY
GLY
GLY
ARG
MET
PRO
VAL
ALA
VAL
MET
ALA
GLU
SER
ALA
F11
G30
T33
Y37•
G38•
A42•
L45•
L46
H47
N48•
R59
N68•
S69
E70•
L71•
I74•
V77•
R80
I93•
V102
Q103
P104
I105
M106
L109•
T113•
A124•
Y125•
D132
E142
W153•
V162•
R165
K166
P167
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
N209
• Molecule 8: COP9 signalosome complex subunit 8
Chain f:
GLY
GLY
GLY
ARG
MET
PRO
VAL
ALA
VAL
MET
ALA
GLU
SER
ALA
F11
S12
F13•
G30
T33
V36•
Y37•
G38•
Q39•
L40•
L41•
A42•
L46•
H47
N48
E70
I74•
V77•
R80
T92•
I93•
I105•
A108•
L109•
T113•
Y125•
I128•
I129
A130•
D131
D132
E142
W153•
Q154•
A155•
V162•
L163•
P164•
R165
K166
P167
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
N209
• Molecule 8: COP9 signalosome complex subunit 8
Page 25 Full wwPDB X-ray Structure Validation Report 4WSN
Chain n:GL
YGL
YGL
YAR
GME
TPR
OVA
LAL
AVA
LME
TAL
AGL
USE
RAL
AF1
1
G30
T33
G38•
Q39•
L40
L41•
A42•
L46
H47
N48
E70
I74•
R80
I105•
M106•
Y125•
I128•
D132
F133•
E142
A155•
R165
K166
P167
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
N209
• Molecule 8: COP9 signalosome complex subunit 8
Chain v:
GLY
GLY
GLY
ARG
MET
PRO
VAL
ALA
VAL
MET
ALA
GLU
SER
ALA
F11
G30
T33
G38•
Q39•
L40
L41•
A42•
L43•
L46
H47
N48
I60•
E70
L71•
I74•
V77•
R80
I105•
M106•
F118•
V121•
Y125•
D132
F133•
V137•
E142
W153•
Q154
A155•
R165
K166
P167
VAL
ALA
GLY
ALA
LEU
ASP
VAL
SER
PHE
ASN
LYS
PHE
ILE
PRO
LEU
SER
GLU
PRO
ALA
PRO
VAL
PRO
PRO
ILE
PRO
ASN
E194
N209
Page 26 Full wwPDB X-ray Structure Validation Report 4WSN
4 Data and refinement statistics i○
Property Value SourceSpace group P 1 DepositorCell constantsa, b, c, α, β, γ
150.64Å 150.98Å 336.72Å92.34◦ 92.62◦ 119.88◦ Depositor
Resolution (Å) 49.64 – 5.5049.63 – 5.50
DepositorEDS
% Data completeness(in resolution range)
96.9 (49.64-5.50)83.8 (49.63-5.50)
DepositorEDS
Rmerge 0.07 DepositorRsym (Not available) Depositor
< I/σ(I) > 1 0.56 (at 5.39Å) XtriageRefinement program REFMAC 5.8.0073 Depositor
R, Rfree0.254 , 0.2820.293 , 0.325
DepositorDCC
Rfree test set 1948 reflections (2.46%) wwPDB-VPWilson B-factor (Å2) 264.4 Xtriage
Anisotropy 0.062 XtriageBulk solvent ksol(e/Å3), Bsol(Å2) 0.28 , 123.9 EDS
L-test for twinning2 < |L| > = 0.43, < L2 > = 0.25 XtriageEstimated twinning fraction 0.059 for -k,-h,-l Xtriage
Fo,Fc correlation 0.88 EDSTotal number of atoms 124428 wwPDB-VP
Average B, all atoms (Å2) 126.0 wwPDB-VP
Xtriage’s analysis on translational NCS is as follows: The largest off-origin peak in the Pattersonfunction is 6.50% of the height of the origin peak. No significant pseudotranslation is detected.
1Intensities estimated from amplitudes.2Theoretical values of < |L| >, < L2 > for acentric reflections are 0.5, 0.333 respectively for untwinned datasets,
and 0.375, 0.2 for perfectly twinned datasets.
Page 27 Full wwPDB X-ray Structure Validation Report 4WSN
5 Model quality i○
5.1 Standard geometry i○
Bond lengths and bond angles in the following residue types are not validated in this section:ZN
The Z score for a bond length (or angle) is the number of standard deviations the observed valueis removed from the expected value. A bond length (or angle) with |Z| > 5 is considered anoutlier worth inspection. RMSZ is the root-mean-square of all Z scores of the bond lengths (orangles).
Mol Chain Bond lengths Bond anglesRMSZ #|Z| >5 RMSZ #|Z| >5
1 A 0.30 0/3404 0.46 0/45881 I 0.30 0/3404 0.47 0/45881 Q 0.30 0/3404 0.47 0/45881 Y 0.30 0/3404 0.47 0/45881 g 0.30 0/3404 0.47 0/45881 o 0.30 0/3404 0.47 0/45882 B 0.30 0/3360 0.45 0/45192 J 0.30 0/3360 0.45 0/45192 R 0.31 0/3360 0.45 0/45192 Z 0.30 0/3360 0.44 0/45192 h 0.30 0/3360 0.45 0/45192 p 0.30 0/3360 0.45 0/45193 C 0.29 0/3250 0.45 0/43903 K 0.29 0/3250 0.45 0/43903 S 0.29 0/3250 0.45 0/43903 a 0.29 0/3250 0.45 0/43903 i 0.29 0/3250 0.45 0/43903 q 0.29 0/3250 0.45 0/43904 D 0.33 0/3303 0.50 1/4460 (0.0%)4 L 0.34 0/3303 0.49 0/44604 T 0.35 0/3303 0.51 1/4460 (0.0%)4 b 0.34 0/3303 0.51 2/4460 (0.0%)4 j 0.34 0/3302 0.52 1/4457 (0.0%)4 r 0.35 0/3302 0.51 1/4457 (0.0%)5 E 0.29 0/2417 0.44 0/32665 M 0.29 0/2417 0.44 0/32665 U 0.29 0/2417 0.45 0/32665 c 0.29 0/2417 0.44 0/32665 k 0.30 0/2417 0.45 0/32665 s 0.29 0/2417 0.45 0/32666 F 0.51 1/2310 (0.0%) 0.46 1/3133 (0.0%)6 N 0.51 1/2310 (0.0%) 0.47 1/3133 (0.0%)
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Mol Chain Bond lengths Bond anglesRMSZ #|Z| >5 RMSZ #|Z| >5
6 V 0.48 1/2310 (0.0%) 0.47 1/3133 (0.0%)6 d 0.50 1/2310 (0.0%) 0.46 1/3133 (0.0%)6 l 0.31 0/2310 0.45 0/31336 t 0.30 0/2310 0.45 0/31337 G 0.31 0/1652 0.46 0/22397 O 0.30 0/1652 0.46 0/22397 W 0.30 0/1652 0.46 0/22397 e 0.31 0/1652 0.46 0/22397 m 0.31 0/1652 0.46 0/22397 u 0.31 0/1652 0.46 0/22398 H 0.30 0/1416 0.44 0/19248 P 0.30 0/1416 0.45 0/19248 X 0.30 0/1416 0.45 0/19248 f 0.29 0/1416 0.44 0/19248 n 0.30 0/1416 0.45 0/19248 v 0.30 0/1416 0.45 0/1924All All 0.32 4/126670 (0.0%) 0.46 10/171108 (0.0%)
Chiral center outliers are detected by calculating the chiral volume of a chiral center and verifying ifthe center is modelled as a planar moiety or with the opposite hand.A planarity outlier is detectedby checking planarity of atoms in a peptide group, atoms in a mainchain group or atoms of asidechain that are expected to be planar.
Mol Chain #Chirality outliers #Planarity outliers5 E 0 15 M 0 15 U 0 15 c 0 15 k 0 15 s 0 1All All 0 6
All (4) bond length outliers are listed below:
Mol Chain Res Type Atoms Z Observed(Å) Ideal(Å)6 F 217 VAL C-N 20.09 1.80 1.346 N 217 VAL C-N 19.82 1.79 1.346 d 217 VAL C-N 19.29 1.78 1.346 V 217 VAL C-N 17.96 1.75 1.34
All (10) bond angle outliers are listed below:
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Mol Chain Res Type Atoms Z Observed(o) Ideal(o)6 V 217 VAL O-C-N -7.51 110.69 122.704 b 264 LEU CB-CG-CD1 6.28 121.67 111.004 r 274 ARG NE-CZ-NH1 6.18 123.39 120.304 T 40 GLU CB-CA-C 6.08 122.56 110.404 D 364 ARG NE-CZ-NH1 6.00 123.30 120.304 b 274 ARG NE-CZ-NH1 5.85 123.22 120.306 d 217 VAL O-C-N -5.66 113.64 122.706 F 217 VAL O-C-N -5.57 113.79 122.704 j 83 GLU CG-CD-OE2 5.55 129.41 118.306 N 217 VAL O-C-N -5.40 114.06 122.70
There are no chirality outliers.
All (6) planarity outliers are listed below:
Mol Chain Res Type Group5 E 163 GLU Peptide5 M 163 GLU Peptide5 U 163 GLU Peptide5 c 163 GLU Peptide5 k 163 GLU Peptide5 s 163 GLU Peptide
5.2 Too-close contacts i○
In the following table, the Non-H and H(model) columns list the number of non-hydrogen atomsand hydrogen atoms in the chain respectively. The H(added) column lists the number of hydrogenatoms added and optimized by MolProbity. The Clashes column lists the number of clashes withinthe asymmetric unit, whereas Symm-Clashes lists symmetry related clashes.
Mol Chain Non-H H(model) H(added) Clashes Symm-Clashes1 A 3348 0 3385 16 01 I 3348 0 3385 14 01 Q 3348 0 3385 14 01 Y 3348 0 3385 12 01 g 3348 0 3385 0 01 o 3348 0 3385 0 02 B 3304 0 3350 9 02 J 3304 0 3350 10 02 R 3304 0 3350 9 02 Z 3304 0 3350 9 02 h 3304 0 3350 0 02 p 3304 0 3350 0 0
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Continued from previous page...Mol Chain Non-H H(model) H(added) Clashes Symm-Clashes3 C 3191 0 3208 19 03 K 3191 0 3208 12 03 S 3191 0 3208 15 03 a 3191 0 3208 0 03 i 3191 0 3208 0 03 q 3191 0 3208 0 04 D 3251 0 3253 15 04 L 3251 0 3253 9 04 T 3251 0 3253 12 04 b 3251 0 3253 0 04 j 3251 0 3252 0 04 r 3251 0 3252 0 05 E 2366 0 2340 8 05 M 2366 0 2340 11 05 U 2366 0 2340 15 05 c 2366 0 2340 0 05 k 2366 0 2340 0 05 s 2366 0 2340 0 06 F 2263 0 2235 14 06 N 2263 0 2235 11 06 V 2263 0 2235 14 06 d 2263 0 2235 0 06 l 2263 0 2236 0 06 t 2263 0 2236 0 07 G 1631 0 1654 7 07 O 1631 0 1654 4 07 W 1631 0 1654 5 07 e 1631 0 1654 0 07 m 1631 0 1654 0 07 u 1631 0 1654 0 08 H 1383 0 1366 7 08 P 1383 0 1366 5 08 X 1383 0 1366 3 08 f 1383 0 1366 0 08 n 1383 0 1366 0 08 v 1383 0 1366 0 09 E 1 0 0 0 09 M 1 0 0 0 09 U 1 0 0 0 09 c 1 0 0 0 09 k 1 0 0 0 09 s 1 0 0 0 0
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Continued from previous page...Mol Chain Non-H H(model) H(added) Clashes Symm-ClashesAll All 124428 0 124746 232 0
The all-atom clashscore is defined as the number of clashes found per 1000 atoms (includinghydrogen atoms). The all-atom clashscore for this structure is 2.
All (232) close contacts within the same asymmetric unit are listed below, sorted by their clashmagnitude.
Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
6:V:217:VAL:C 6:V:218:ALA:N 1.75 1.396:N:217:VAL:C 6:N:218:ALA:N 1.79 1.356:F:217:VAL:C 6:F:218:ALA:N 1.80 1.32
5:U:116:TYR:CE2 6:V:114:GLN:HG3 2.32 0.654:T:37:SER:O 4:T:40:GLU:OE1 2.17 0.613:C:153:LYS:O 8:H:59:ARG:NH1 2.33 0.613:K:88:CYS:O 3:K:90:GLY:N 2.35 0.593:C:88:CYS:O 3:C:90:GLY:N 2.36 0.58
4:D:254:ARG:HD3 6:F:174:ILE:HG13 1.85 0.587:W:24:GLY:HA2 7:W:55:LEU:HD21 1.86 0.587:O:24:GLY:HA2 7:O:55:LEU:HD21 1.86 0.583:S:88:CYS:O 3:S:90:GLY:N 2.36 0.58
4:D:140:ASN:HA 5:M:193:TYR:HD1 1.68 0.577:G:24:GLY:HA2 7:G:55:LEU:HD21 1.86 0.574:T:140:ASN:OD1 4:T:141:VAL:N 2.37 0.576:V:267:LEU:O 6:V:268:PRO:C 2.43 0.576:F:267:LEU:O 6:F:268:PRO:C 2.42 0.576:N:267:LEU:O 6:N:268:PRO:C 2.42 0.56
3:K:64:VAL:HG12 3:K:64:VAL:O 2.06 0.554:L:254:ARG:HD3 6:N:174:ILE:HG13 1.88 0.556:F:272:THR:HG22 7:G:110:CYS:SG 2.46 0.55
3:C:64:VAL:O 3:C:64:VAL:HG12 2.06 0.553:S:64:VAL:HG12 3:S:64:VAL:O 2.07 0.555:U:63:LEU:HB3 6:V:46:LEU:HD13 1.89 0.53
1:Y:496:LEU:HD11 2:Z:443:ALA:HB2 1.89 0.535:M:116:TYR:CE2 6:N:114:GLN:HG3 2.44 0.535:M:280:LEU:HD21 6:N:303:ASN:HD21 1.74 0.522:J:441:LYS:HE3 5:M:280:LEU:HD22 1.91 0.52
5:U:280:LEU:HD21 6:V:303:ASN:HD21 1.75 0.522:Z:283:ALA:O 2:Z:287:MET:N 2.43 0.522:B:272:ARG:O 2:B:276:CYS:N 2.44 0.512:J:272:ARG:O 2:J:276:CYS:N 2.44 0.51
4:D:385:LEU:HD22 6:F:234:ARG:HD2 1.93 0.51Continued on next page...
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Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
2:R:283:ALA:O 2:R:287:MET:N 2.43 0.513:K:367:TYR:HA 3:K:372:MET:HG3 1.92 0.502:R:272:ARG:O 2:R:276:CYS:N 2.44 0.50
4:T:254:ARG:HD3 6:V:174:ILE:HG13 1.93 0.503:C:367:TYR:HA 3:C:372:MET:HG3 1.92 0.505:E:116:TYR:CE2 6:F:114:GLN:HG3 2.46 0.502:B:283:ALA:O 2:B:287:MET:N 2.42 0.502:J:283:ALA:O 2:J:287:MET:N 2.42 0.50
1:A:486:ALA:HB3 3:C:386:LEU:HD21 1.94 0.503:S:367:TYR:HA 3:S:372:MET:HG3 1.93 0.491:I:209:LEU:HG 1:I:217:ALA:HB1 1.94 0.491:I:486:ALA:HB3 3:K:386:LEU:HD21 1.94 0.491:Y:209:LEU:HG 1:Y:217:ALA:HB1 1.94 0.491:A:209:LEU:HG 1:A:217:ALA:HB1 1.95 0.491:Q:209:LEU:HG 1:Q:217:ALA:HB1 1.94 0.492:Z:272:ARG:O 2:Z:276:CYS:N 2.44 0.491:A:504:SER:HA 3:C:215:ALA:HB2 1.95 0.49
1:A:496:LEU:HD11 2:B:443:ALA:HB2 1.94 0.491:Q:486:ALA:HB3 3:S:386:LEU:HD21 1.95 0.484:L:275:GLY:N 4:L:329:GLU:OE2 2.45 0.483:K:153:LYS:O 8:P:59:ARG:NH1 2.44 0.481:Q:381:LEU:HG 1:Q:402:TYR:CE2 2.49 0.484:D:275:GLY:N 4:D:329:GLU:OE2 2.46 0.48
1:A:242:ILE:HG23 1:A:254:VAL:HG13 1.96 0.481:A:264:THR:HB 1:A:265:PRO:HD3 1.96 0.481:I:242:ILE:HG23 1:I:254:VAL:HG13 1.96 0.481:Q:264:THR:HB 1:Q:265:PRO:HD3 1.96 0.481:I:264:THR:HB 1:I:265:PRO:HD3 1.96 0.471:Q:242:ILE:HG23 1:Q:254:VAL:HG13 1.96 0.47
3:S:70:SER:O 3:S:71:VAL:HG22 2.14 0.478:X:103:GLN:N 8:X:104:PRO:HD2 2.29 0.47
1:Y:242:ILE:HG23 1:Y:254:VAL:HG13 1.97 0.471:A:381:LEU:HG 1:A:402:TYR:CE2 2.48 0.475:U:333:ILE:HG21 7:W:107:LYS:HA 1.95 0.471:Y:264:THR:HB 1:Y:265:PRO:HD3 1.96 0.473:C:70:SER:O 3:C:71:VAL:HG22 2.14 0.473:S:152:ALA:O 3:S:154:CYS:N 2.47 0.474:T:19:HIS:CE1 4:T:61:ILE:HD13 2.49 0.473:C:152:ALA:O 3:C:154:CYS:N 2.47 0.478:H:103:GLN:N 8:H:104:PRO:HD2 2.30 0.473:K:152:ALA:O 3:K:154:CYS:N 2.48 0.47
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Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
4:L:399:ALA:HB1 6:N:237:LEU:HD22 1.95 0.473:K:70:SER:O 3:K:71:VAL:HG22 2.14 0.47
4:L:385:LEU:HD22 6:N:234:ARG:HD2 1.97 0.475:E:163:GLU:HG3 5:E:164:PRO:HD3 1.97 0.476:N:297:LYS:HD3 8:P:207:LEU:HD23 1.98 0.461:Q:444:ILE:HG21 3:S:313:THR:HA 1.98 0.461:I:381:LEU:HG 1:I:402:TYR:CE2 2.49 0.468:P:103:GLN:N 8:P:104:PRO:HD2 2.30 0.466:V:217:VAL:CA 6:V:218:ALA:N 2.74 0.461:Y:381:LEU:HG 1:Y:402:TYR:CE2 2.49 0.461:A:468:ARG:NH2 3:C:367:TYR:O 2.46 0.465:M:163:GLU:HG3 5:M:164:PRO:HD3 1.98 0.463:K:9:VAL:HG21 3:K:42:LEU:HD22 1.98 0.461:Y:395:ALA:N 1:Y:396:PRO:CD 2.79 0.463:C:9:VAL:HG21 3:C:42:LEU:HD22 1.98 0.464:D:399:ALA:HB1 6:F:237:LEU:HD22 1.98 0.466:F:272:THR:CG2 7:G:110:CYS:SG 3.03 0.464:D:269:LEU:HA 6:F:79:ARG:HD3 1.98 0.455:E:163:GLU:HG3 5:E:164:PRO:CD 2.46 0.453:S:9:VAL:HG21 3:S:42:LEU:HD22 1.98 0.455:U:163:GLU:HG3 5:U:164:PRO:HD3 1.97 0.454:T:275:GLY:N 4:T:329:GLU:OE2 2.47 0.45
4:D:274:ARG:HD3 4:D:274:ARG:HA 1.82 0.455:U:163:GLU:HG3 5:U:164:PRO:CD 2.46 0.455:M:163:GLU:HG3 5:M:164:PRO:CD 2.47 0.451:Q:395:ALA:N 1:Q:396:PRO:CD 2.80 0.45
3:C:119:ARG:HD3 8:H:29:GLY:HA2 1.99 0.456:F:244:ALA:HB1 6:F:250:VAL:HG21 1.99 0.455:U:124:ALA:HB1 5:U:129:ARG:HB2 1.99 0.454:L:230:LEU:CD1 4:L:264:LEU:HD22 2.47 0.453:S:341:MET:HB3 3:S:347:ILE:HG22 1.99 0.454:T:269:LEU:HA 6:V:79:ARG:HD3 1.99 0.454:D:230:LEU:CD1 4:D:264:LEU:HD22 2.48 0.442:R:293:PRO:CG 2:R:315:VAL:HG21 2.47 0.444:T:230:LEU:CD1 4:T:264:LEU:HD22 2.47 0.441:I:94:LEU:HD22 1:I:98:GLU:HG3 1.99 0.446:N:244:ALA:HB1 6:N:250:VAL:HG21 2.00 0.446:V:244:ALA:HB1 6:V:250:VAL:HG21 2.00 0.442:Z:413:HIS:O 2:Z:415:LYS:N 2.51 0.44
3:C:118:LEU:HD23 8:H:30:GLY:O 2.18 0.443:C:341:MET:HB3 3:C:347:ILE:HG22 1.99 0.44
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Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
1:A:280:ALA:HB2 1:A:312:ASP:HB3 1.99 0.441:A:395:ALA:N 1:A:396:PRO:CD 2.80 0.44
1:A:94:LEU:HD22 1:A:98:GLU:HG3 2.00 0.441:I:280:ALA:HB2 1:I:312:ASP:HB3 1.99 0.442:J:293:PRO:CG 2:J:315:VAL:HG21 2.47 0.441:Y:280:ALA:HB2 1:Y:312:ASP:HB3 1.99 0.441:I:395:ALA:N 1:I:396:PRO:CD 2.81 0.44
2:Z:293:PRO:CG 2:Z:315:VAL:HG21 2.48 0.442:R:85:PHE:CZ 2:R:123:LYS:HG3 2.53 0.442:B:413:HIS:O 2:B:415:LYS:N 2.51 0.44
5:E:124:ALA:HB1 5:E:129:ARG:HB2 1.99 0.446:V:110:GLU:O 6:V:114:GLN:HG2 2.18 0.441:Y:108:PRO:O 1:Y:109:THR:OG1 2.31 0.44
1:Y:94:LEU:HD22 1:Y:98:GLU:HG3 2.00 0.442:Z:85:PHE:CZ 2:Z:123:LYS:HG3 2.52 0.441:A:486:ALA:CB 3:C:386:LEU:HD21 2.47 0.432:B:293:PRO:CG 2:B:315:VAL:HG21 2.48 0.433:K:341:MET:HB3 3:K:347:ILE:HG22 2.00 0.435:M:124:ALA:HB1 5:M:129:ARG:HB2 1.99 0.436:N:110:GLU:O 6:N:114:GLN:HG2 2.18 0.43
8:P:102:VAL:HG12 8:P:106:MET:HG2 2.00 0.432:J:85:PHE:CZ 2:J:123:LYS:HG3 2.53 0.434:T:365:GLU:O 4:T:366:ALA:HB3 2.18 0.436:F:110:GLU:O 6:F:114:GLN:HG2 2.18 0.43
7:O:102:VAL:HG22 7:O:141:LEU:HD21 2.00 0.431:Q:280:ALA:HB2 1:Q:312:ASP:HB3 1.99 0.431:Q:94:LEU:HD22 1:Q:98:GLU:HG3 1.99 0.437:W:102:VAL:HG22 7:W:141:LEU:HD21 2.00 0.432:B:85:PHE:CZ 2:B:123:LYS:HG3 2.53 0.433:S:153:LYS:O 8:X:59:ARG:NH1 2.50 0.431:Q:415:SER:N 1:Q:416:PRO:HD2 2.33 0.43
8:H:102:VAL:HG12 8:H:106:MET:HG2 2.00 0.433:S:138:LEU:HB2 3:S:166:MET:HG3 2.01 0.431:Q:486:ALA:CB 3:S:386:LEU:HD21 2.49 0.435:U:120:TYR:HA 6:V:111:GLN:OE1 2.19 0.435:U:333:ILE:CG2 7:W:107:LYS:HA 2.48 0.434:D:327:LEU:HD13 7:G:126:ARG:NH1 2.33 0.431:A:477:LEU:O 1:A:481:GLU:HG2 2.19 0.435:E:261:TYR:CZ 5:E:265:GLN:HG3 2.54 0.431:I:128:VAL:HG11 1:I:171:ARG:HD3 2.01 0.432:J:413:HIS:O 2:J:415:LYS:N 2.52 0.43
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Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
5:U:189:TYR:CE2 5:U:195:PRO:HB3 2.54 0.428:X:102:VAL:HG12 8:X:106:MET:HG2 2.00 0.427:G:102:VAL:HG22 7:G:141:LEU:HD21 2.00 0.424:L:365:GLU:O 4:L:366:ALA:HB3 2.19 0.421:Q:477:LEU:O 1:Q:481:GLU:HG2 2.18 0.422:R:413:HIS:O 2:R:415:LYS:N 2.52 0.422:Z:101:SER:O 2:Z:102:ALA:HB3 2.19 0.422:B:101:SER:O 2:B:102:ALA:HB3 2.19 0.422:J:101:SER:O 2:J:102:ALA:HB3 2.19 0.42
3:S:94:ARG:NH1 3:S:137:GLN:OE1 2.52 0.423:C:94:ARG:NH1 3:C:137:GLN:OE1 2.52 0.421:I:477:LEU:O 1:I:481:GLU:HG2 2.19 0.42
3:K:94:ARG:NH1 3:K:137:GLN:OE1 2.53 0.421:Q:128:VAL:HG11 1:Q:171:ARG:HD3 2.01 0.421:Y:477:LEU:O 1:Y:481:GLU:HG2 2.19 0.424:D:365:GLU:O 4:D:366:ALA:HB3 2.19 0.42
6:V:155:ASN:HB3 6:V:164:PRO:HB2 2.01 0.425:M:261:TYR:CZ 5:M:265:GLN:HG3 2.55 0.421:Y:128:VAL:HG11 1:Y:171:ARG:HD3 2.01 0.421:A:128:VAL:HG11 1:A:171:ARG:HD3 2.02 0.424:D:274:ARG:NH1 4:D:327:LEU:HD11 2.35 0.426:N:155:ASN:HB3 6:N:164:PRO:HB2 2.00 0.422:Z:192:THR:HA 2:Z:228:ILE:HG13 2.02 0.426:F:155:ASN:HB3 6:F:164:PRO:HB2 2.01 0.425:M:189:TYR:CE2 5:M:195:PRO:HB3 2.55 0.421:Y:415:SER:N 1:Y:416:PRO:HD2 2.35 0.42
5:E:189:TYR:CE2 5:E:195:PRO:HB3 2.55 0.414:T:149:LEU:HD21 4:T:187:TYR:HA 2.02 0.411:A:415:SER:N 1:A:416:PRO:HD2 2.34 0.417:G:94:ASN:O 7:G:98:HIS:ND1 2.53 0.411:I:415:SER:N 1:I:416:PRO:HD2 2.34 0.41
3:C:138:LEU:HB2 3:C:166:MET:HG3 2.01 0.412:R:101:SER:O 2:R:102:ALA:HB3 2.19 0.414:T:58:SER:OG 4:T:60:VAL:HG22 2.20 0.413:C:377:ASP:OD1 8:H:203:TYR:OH 2.37 0.414:D:149:LEU:HD21 4:D:187:TYR:HA 2.02 0.412:J:192:THR:HA 2:J:228:ILE:HG13 2.02 0.415:U:176:ILE:HG23 6:V:194:GLU:HG2 2.02 0.413:K:138:LEU:HB2 3:K:166:MET:HG3 2.01 0.412:B:192:THR:HA 2:B:228:ILE:HG13 2.03 0.413:C:292:MET:HA 3:C:295:VAL:HG12 2.02 0.41
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Atom-1 Atom-2 Interatomicdistance (Å)
Clashoverlap (Å)
8:H:80:ARG:N 8:H:80:ARG:HD2 2.36 0.411:I:482:PHE:CD1 2:J:435:ASN:HB2 2.55 0.412:R:141:ASP:OD2 2:R:144:ASN:ND2 2.53 0.414:L:308:ASN:HB3 4:L:328:LEU:HD22 2.03 0.415:E:129:ARG:HG3 6:F:57:ARG:NH2 2.35 0.412:R:192:THR:HA 2:R:228:ILE:HG13 2.03 0.414:T:308:ASN:HB3 4:T:328:LEU:HD22 2.02 0.414:D:308:ASN:HB3 4:D:328:LEU:HD22 2.03 0.414:L:149:LEU:HD21 4:L:187:TYR:HA 2.02 0.415:M:175:THR:HG23 5:M:181:VAL:HA 2.02 0.415:U:261:TYR:CZ 5:U:265:GLN:HG3 2.55 0.412:Z:141:ASP:OD2 2:Z:144:ASN:ND2 2.54 0.414:D:140:ASN:HA 5:M:193:TYR:CD1 2.52 0.413:K:292:MET:HA 3:K:295:VAL:HG12 2.02 0.414:L:1:MET:N 4:L:40:GLU:OE1 2.54 0.41
7:O:111:ILE:HG22 7:O:112:PRO:O 2.21 0.415:U:120:TYR:N 6:V:111:GLN:HE22 2.19 0.41
1:A:258:VAL:HG11 1:A:289:ALA:HB2 2.03 0.403:C:46:LEU:O 3:C:48:ALA:N 2.54 0.40
4:T:374:ILE:HD13 5:U:324:LYS:HD2 2.03 0.407:W:94:ASN:O 7:W:98:HIS:ND1 2.54 0.40
2:B:141:ASP:OD2 2:B:144:ASN:ND2 2.54 0.404:D:1:MET:N 4:D:40:GLU:OE1 2.55 0.40
2:R:303:LYS:HA 2:R:308:ILE:HD11 2.04 0.402:J:141:ASP:OD2 2:J:144:ASN:ND2 2.54 0.403:S:292:MET:HA 3:S:295:VAL:HG12 2.02 0.405:E:280:LEU:HD21 6:F:303:ASN:HD21 1.87 0.407:G:111:ILE:HG22 7:G:112:PRO:O 2.21 0.401:I:148:ALA:HB3 1:I:149:PRO:HD3 2.03 0.401:I:258:VAL:HG11 1:I:289:ALA:HB2 2.03 0.407:O:94:ASN:O 7:O:98:HIS:ND1 2.54 0.40
8:P:154:GLN:HB3 8:P:163:LEU:HB2 2.04 0.401:Q:148:ALA:HB3 1:Q:149:PRO:HD3 2.03 0.403:S:249:VAL:HA 3:S:253:ILE:HB 2.04 0.40
5:U:175:THR:HG23 5:U:181:VAL:HA 2.03 0.40
There are no symmetry-related clashes.
Page 37 Full wwPDB X-ray Structure Validation Report 4WSN
5.3 Torsion angles i○
5.3.1 Protein backbone i○
In the following table, the Percentiles column shows the percent Ramachandran outliers of thechain as a percentile score with respect to all X-ray entries followed by that with respect to entriesof similar resolution.
The Analysed column shows the number of residues for which the backbone conformation wasanalysed, and the total number of residues.
Mol Chain Analysed Favoured Allowed Outliers Percentiles
1 A 415/480 (86%) 374 (90%) 37 (9%) 4 (1%) 17 59
1 I 415/480 (86%) 373 (90%) 38 (9%) 4 (1%) 17 59
1 Q 415/480 (86%) 374 (90%) 37 (9%) 4 (1%) 17 59
1 Y 415/480 (86%) 373 (90%) 38 (9%) 4 (1%) 17 59
1 g 415/480 (86%) 374 (90%) 37 (9%) 4 (1%) 17 59
1 o 415/480 (86%) 373 (90%) 38 (9%) 4 (1%) 17 59
2 B 397/447 (89%) 351 (88%) 34 (9%) 12 (3%) 5 35
2 J 397/447 (89%) 351 (88%) 34 (9%) 12 (3%) 5 35
2 R 397/447 (89%) 353 (89%) 32 (8%) 12 (3%) 5 35
2 Z 397/447 (89%) 351 (88%) 34 (9%) 12 (3%) 5 35
2 h 397/447 (89%) 351 (88%) 36 (9%) 10 (2%) 6 39
2 p 397/447 (89%) 351 (88%) 35 (9%) 11 (3%) 5 37
3 C 399/427 (93%) 342 (86%) 42 (10%) 15 (4%) 3 30
3 K 399/427 (93%) 342 (86%) 43 (11%) 14 (4%) 4 32
3 S 399/427 (93%) 342 (86%) 43 (11%) 14 (4%) 4 32
3 a 399/427 (93%) 341 (86%) 43 (11%) 15 (4%) 3 30
3 i 399/427 (93%) 342 (86%) 42 (10%) 15 (4%) 3 30
3 q 399/427 (93%) 342 (86%) 42 (10%) 15 (4%) 3 30
4 D 404/410 (98%) 372 (92%) 28 (7%) 4 (1%) 17 59
4 L 404/410 (98%) 373 (92%) 27 (7%) 4 (1%) 17 59
4 T 404/410 (98%) 372 (92%) 28 (7%) 4 (1%) 17 59
4 b 404/410 (98%) 374 (93%) 26 (6%) 4 (1%) 17 59
4 j 402/410 (98%) 372 (92%) 26 (6%) 4 (1%) 17 59
4 r 402/410 (98%) 372 (92%) 26 (6%) 4 (1%) 17 59
5 E 294/325 (90%) 262 (89%) 26 (9%) 6 (2%) 8 44Continued on next page...
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Continued from previous page...Mol Chain Analysed Favoured Allowed Outliers Percentiles
5 M 294/325 (90%) 262 (89%) 26 (9%) 6 (2%) 8 44
5 U 294/325 (90%) 262 (89%) 28 (10%) 4 (1%) 12 52
5 c 294/325 (90%) 262 (89%) 26 (9%) 6 (2%) 8 44
5 k 294/325 (90%) 261 (89%) 27 (9%) 6 (2%) 8 44
5 s 294/325 (90%) 261 (89%) 27 (9%) 6 (2%) 8 44
6 F 286/331 (86%) 257 (90%) 25 (9%) 4 (1%) 12 52
6 N 286/331 (86%) 257 (90%) 25 (9%) 4 (1%) 12 52
6 V 286/331 (86%) 258 (90%) 24 (8%) 4 (1%) 12 52
6 d 286/331 (86%) 257 (90%) 25 (9%) 4 (1%) 12 52
6 l 286/331 (86%) 257 (90%) 25 (9%) 4 (1%) 12 52
6 t 286/331 (86%) 257 (90%) 25 (9%) 4 (1%) 12 52
7 G 206/222 (93%) 193 (94%) 12 (6%) 1 (0%) 31 74
7 O 206/222 (93%) 194 (94%) 11 (5%) 1 (0%) 31 74
7 W 206/222 (93%) 194 (94%) 11 (5%) 1 (0%) 31 74
7 e 206/222 (93%) 193 (94%) 12 (6%) 1 (0%) 31 74
7 m 206/222 (93%) 193 (94%) 12 (6%) 1 (0%) 31 74
7 u 206/222 (93%) 193 (94%) 12 (6%) 1 (0%) 31 74
8 H 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
8 P 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
8 X 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
8 f 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
8 n 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
8 v 169/213 (79%) 156 (92%) 11 (6%) 2 (1%) 14 56
All All 15416/17130 (90%) 13844 (90%) 1291 (8%) 281 (2%) 9 47
All (281) Ramachandran outliers are listed below:
Mol Chain Res Type2 B 229 PRO2 B 414 GLN3 C 51 VAL3 C 89 ASN3 C 364 PRO3 C 401 PRO
Continued on next page...
Page 39 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type5 E 164 PRO6 F 267 LEU6 F 268 PRO2 J 414 GLN3 K 51 VAL3 K 89 ASN3 K 364 PRO3 K 401 PRO5 M 164 PRO6 N 267 LEU6 N 268 PRO2 R 414 GLN3 S 51 VAL3 S 89 ASN3 S 364 PRO3 S 401 PRO5 U 164 PRO6 V 267 LEU6 V 268 PRO2 Z 414 GLN3 a 51 VAL3 a 89 ASN3 a 364 PRO3 a 401 PRO5 c 164 PRO6 d 267 LEU6 d 268 PRO2 h 229 PRO2 h 414 GLN3 i 51 VAL3 i 89 ASN3 i 364 PRO3 i 401 PRO5 k 164 PRO6 l 267 LEU6 l 268 PRO2 p 229 PRO2 p 414 GLN3 q 51 VAL3 q 89 ASN3 q 364 PRO3 q 401 PRO
Continued on next page...
Page 40 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type5 s 164 PRO6 t 267 LEU6 t 268 PRO2 B 61 GLU2 B 289 SER2 B 413 HIS3 C 47 GLY3 C 86 SER3 C 91 GLU3 C 136 ASN4 D 362 GLU6 F 214 ASN8 H 48 ASN2 J 61 GLU2 J 229 PRO2 J 289 SER2 J 413 HIS3 K 47 GLY3 K 86 SER3 K 91 GLU3 K 136 ASN4 L 362 GLU6 N 214 ASN8 P 48 ASN2 R 61 GLU2 R 229 PRO2 R 289 SER2 R 413 HIS3 S 47 GLY3 S 86 SER3 S 91 GLU3 S 136 ASN4 T 362 GLU5 U 198 GLU6 V 214 ASN8 X 48 ASN2 Z 61 GLU2 Z 229 PRO2 Z 289 SER2 Z 413 HIS3 a 47 GLY3 a 86 SER
Continued on next page...
Page 41 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type3 a 91 GLU3 a 136 ASN4 b 362 GLU6 d 214 ASN8 f 48 ASN2 h 61 GLU2 h 289 SER2 h 413 HIS3 i 47 GLY3 i 86 SER3 i 91 GLU3 i 136 ASN4 j 362 GLU6 l 214 ASN8 n 48 ASN2 p 61 GLU2 p 289 SER2 p 413 HIS3 q 47 GLY3 q 86 SER3 q 91 GLU3 q 136 ASN4 r 362 GLU6 t 214 ASN8 v 48 ASN2 B 43 LYS2 B 293 PRO2 B 296 SER3 C 33 GLU3 C 114 ARG3 C 172 GLU4 D 294 ALA4 D 366 ALA5 E 198 GLU5 E 201 SER8 H 30 GLY2 J 43 LYS2 J 293 PRO2 J 296 SER3 K 33 GLU3 K 114 ARG3 K 172 GLU
Continued on next page...
Page 42 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type4 L 294 ALA4 L 366 ALA5 M 198 GLU5 M 201 SER6 N 36 THR8 P 30 GLY2 R 43 LYS2 R 293 PRO2 R 296 SER3 S 33 GLU3 S 114 ARG3 S 172 GLU4 T 294 ALA4 T 366 ALA8 X 30 GLY2 Z 43 LYS2 Z 293 PRO2 Z 296 SER3 a 33 GLU3 a 114 ARG3 a 172 GLU4 b 294 ALA4 b 366 ALA5 c 198 GLU5 c 201 SER8 f 30 GLY2 h 43 LYS2 h 293 PRO2 h 296 SER3 i 33 GLU3 i 114 ARG3 i 172 GLU4 j 294 ALA4 j 366 ALA5 k 198 GLU6 l 36 THR8 n 30 GLY2 p 43 LYS2 p 293 PRO2 p 296 SER3 q 33 GLU3 q 114 ARG
Continued on next page...
Page 43 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type3 q 172 GLU4 r 294 ALA4 r 366 ALA5 s 198 GLU5 s 201 SER8 v 30 GLY2 B 396 ASN6 F 36 THR2 J 396 ASN2 R 396 ASN6 V 36 THR2 Z 396 ASN6 d 36 THR2 h 396 ASN5 k 201 SER2 p 396 ASN6 t 36 THR1 A 275 ASP1 A 276 SER1 A 314 CYS3 C 71 VAL3 C 117 PRO3 C 329 SER5 E 200 PRO1 I 275 ASP1 I 276 SER1 I 314 CYS3 K 71 VAL3 K 117 PRO3 K 329 SER5 M 200 PRO1 Q 275 ASP1 Q 276 SER1 Q 314 CYS2 R 44 GLU3 S 71 VAL3 S 117 PRO3 S 329 SER5 U 281 GLY1 Y 275 ASP1 Y 276 SER1 Y 314 CYS
Continued on next page...
Page 44 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type3 a 71 VAL3 a 117 PRO3 a 329 SER4 b 159 ASP5 c 200 PRO5 c 281 GLY1 g 275 ASP1 g 276 SER1 g 314 CYS3 i 71 VAL3 i 117 PRO3 i 175 ALA3 i 329 SER4 j 159 ASP1 o 275 ASP1 o 276 SER1 o 314 CYS3 q 71 VAL3 q 117 PRO3 q 329 SER4 r 159 ASP5 s 200 PRO2 B 44 GLU2 B 231 PRO3 C 175 ALA4 D 159 ASP5 E 281 GLY7 G 72 TYR2 J 44 GLU2 J 231 PRO4 L 159 ASP5 M 281 GLY7 O 72 TYR2 R 231 PRO4 T 159 ASP7 W 72 TYR2 Z 44 GLU2 Z 231 PRO3 a 175 ALA7 e 72 TYR2 h 231 PRO5 k 200 PRO
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Page 45 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type7 m 72 TYR2 p 44 GLU2 p 231 PRO3 q 175 ALA7 u 72 TYR5 E 43 LYS5 M 43 LYS5 U 43 LYS5 c 43 LYS5 k 43 LYS5 k 281 GLY5 s 43 LYS5 s 281 GLY2 Z 417 GLY1 A 264 THR2 B 417 GLY2 J 417 GLY1 Q 264 THR2 R 417 GLY1 g 264 THR1 o 264 THR1 I 264 THR1 Y 264 THR
5.3.2 Protein sidechains i○
In the following table, the Percentiles column shows the percent sidechain outliers of the chain as apercentile score with respect to all X-ray entries followed by that with respect to entries of similarresolution.
The Analysed column shows the number of residues for which the sidechain conformation wasanalysed, and the total number of residues.
Mol Chain Analysed Rotameric Outliers Percentiles
1 A 365/415 (88%) 354 (97%) 11 (3%) 44 69
1 I 365/415 (88%) 354 (97%) 11 (3%) 44 69
1 Q 365/415 (88%) 355 (97%) 10 (3%) 48 71
1 Y 365/415 (88%) 355 (97%) 10 (3%) 48 71
1 g 365/415 (88%) 354 (97%) 11 (3%) 44 69
1 o 365/415 (88%) 355 (97%) 10 (3%) 48 71Continued on next page...
Page 46 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Analysed Rotameric Outliers Percentiles
2 B 367/406 (90%) 360 (98%) 7 (2%) 60 80
2 J 367/406 (90%) 360 (98%) 7 (2%) 60 80
2 R 367/406 (90%) 360 (98%) 7 (2%) 60 80
2 Z 367/406 (90%) 360 (98%) 7 (2%) 60 80
2 h 367/406 (90%) 360 (98%) 7 (2%) 60 80
2 p 367/406 (90%) 360 (98%) 7 (2%) 60 80
3 C 358/378 (95%) 351 (98%) 7 (2%) 58 79
3 K 358/378 (95%) 352 (98%) 6 (2%) 63 83
3 S 358/378 (95%) 352 (98%) 6 (2%) 63 83
3 a 358/378 (95%) 351 (98%) 7 (2%) 58 79
3 i 358/378 (95%) 351 (98%) 7 (2%) 58 79
3 q 358/378 (95%) 352 (98%) 6 (2%) 63 83
4 D 347/348 (100%) 328 (94%) 19 (6%) 24 55
4 L 347/348 (100%) 329 (95%) 18 (5%) 25 56
4 T 347/348 (100%) 329 (95%) 18 (5%) 25 56
4 b 347/348 (100%) 330 (95%) 17 (5%) 27 58
4 j 347/348 (100%) 327 (94%) 20 (6%) 22 53
4 r 347/348 (100%) 330 (95%) 17 (5%) 27 58
5 E 255/276 (92%) 249 (98%) 6 (2%) 52 75
5 M 255/276 (92%) 249 (98%) 6 (2%) 52 75
5 U 255/276 (92%) 248 (97%) 7 (3%) 48 71
5 c 255/276 (92%) 249 (98%) 6 (2%) 52 75
5 k 255/276 (92%) 249 (98%) 6 (2%) 52 75
5 s 255/276 (92%) 249 (98%) 6 (2%) 52 75
6 F 250/277 (90%) 247 (99%) 3 (1%) 74 87
6 N 250/277 (90%) 246 (98%) 4 (2%) 65 83
6 V 250/277 (90%) 247 (99%) 3 (1%) 74 87
6 d 250/277 (90%) 247 (99%) 3 (1%) 74 87
6 l 250/277 (90%) 247 (99%) 3 (1%) 74 87
6 t 250/277 (90%) 247 (99%) 3 (1%) 74 87
7 G 174/184 (95%) 168 (97%) 6 (3%) 40 66Continued on next page...
Page 47 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Analysed Rotameric Outliers Percentiles
7 O 174/184 (95%) 168 (97%) 6 (3%) 40 66
7 W 174/184 (95%) 168 (97%) 6 (3%) 40 66
7 e 174/184 (95%) 168 (97%) 6 (3%) 40 66
7 m 174/184 (95%) 168 (97%) 6 (3%) 40 66
7 u 174/184 (95%) 168 (97%) 6 (3%) 40 66
8 H 144/174 (83%) 137 (95%) 7 (5%) 27 58
8 P 144/174 (83%) 137 (95%) 7 (5%) 27 58
8 X 144/174 (83%) 137 (95%) 7 (5%) 27 58
8 f 144/174 (83%) 137 (95%) 7 (5%) 27 58
8 n 144/174 (83%) 137 (95%) 7 (5%) 27 58
8 v 144/174 (83%) 137 (95%) 7 (5%) 27 58
All All 13560/14748 (92%) 13173 (97%) 387 (3%) 45 70
All (387) residues with a non-rotameric sidechain are listed below:
Mol Chain Res Type1 A 94 LEU1 A 106 HIS1 A 182 ASP1 A 208 TYR1 A 226 ASP1 A 287 CYS1 A 294 LEU1 A 315 ASP1 A 342 LEU1 A 408 ARG1 A 498 ASN2 B 84 ASN2 B 162 ARG2 B 193 GLN2 B 208 GLN2 B 239 GLU2 B 247 ARG2 B 342 PHE3 C 52 GLN3 C 124 LEU3 C 167 MET3 C 221 LEU
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Page 48 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type3 C 362 ASP3 C 365 GLU3 C 370 PRO4 D 1 MET4 D 22 LEU4 D 40 GLU4 D 55 GLU4 D 72 HIS4 D 83 GLU4 D 91 LYS4 D 100 GLU4 D 121 ARG4 D 149 LEU4 D 179 THR4 D 202 ILE4 D 228 HIS4 D 245 MET4 D 276 ASN4 D 286 MET4 D 351 PHE4 D 362 GLU4 D 394 GLU5 E 77 VAL5 E 140 HIS5 E 163 GLU5 E 165 PHE5 E 173 THR5 E 267 PHE6 F 112 PHE6 F 120 GLU6 F 285 ASP7 G 98 HIS7 G 110 CYS7 G 161 ASP7 G 167 LEU7 G 173 THR7 G 202 GLN8 H 33 THR8 H 46 LEU8 H 70 GLU8 H 80 ARG8 H 132 ASP
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Continued from previous page...Mol Chain Res Type8 H 142 GLU8 H 165 ARG1 I 94 LEU1 I 106 HIS1 I 182 ASP1 I 208 TYR1 I 226 ASP1 I 287 CYS1 I 294 LEU1 I 315 ASP1 I 342 LEU1 I 408 ARG1 I 498 ASN2 J 84 ASN2 J 162 ARG2 J 193 GLN2 J 208 GLN2 J 239 GLU2 J 247 ARG2 J 342 PHE3 K 52 GLN3 K 124 LEU3 K 167 MET3 K 221 LEU3 K 362 ASP3 K 365 GLU4 L 22 LEU4 L 40 GLU4 L 72 HIS4 L 83 GLU4 L 91 LYS4 L 121 ARG4 L 149 LEU4 L 175 GLN4 L 179 THR4 L 202 ILE4 L 228 HIS4 L 245 MET4 L 274 ARG4 L 276 ASN4 L 286 MET4 L 351 PHE
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Page 50 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type4 L 362 GLU4 L 394 GLU5 M 77 VAL5 M 140 HIS5 M 163 GLU5 M 165 PHE5 M 173 THR5 M 267 PHE6 N 112 PHE6 N 120 GLU6 N 203 VAL6 N 285 ASP7 O 98 HIS7 O 110 CYS7 O 161 ASP7 O 167 LEU7 O 173 THR7 O 202 GLN8 P 33 THR8 P 46 LEU8 P 70 GLU8 P 80 ARG8 P 132 ASP8 P 142 GLU8 P 165 ARG1 Q 94 LEU1 Q 182 ASP1 Q 208 TYR1 Q 226 ASP1 Q 287 CYS1 Q 294 LEU1 Q 315 ASP1 Q 342 LEU1 Q 408 ARG1 Q 498 ASN2 R 84 ASN2 R 162 ARG2 R 193 GLN2 R 208 GLN2 R 239 GLU2 R 247 ARG2 R 342 PHE
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Page 51 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type3 S 52 GLN3 S 124 LEU3 S 167 MET3 S 221 LEU3 S 362 ASP3 S 365 GLU4 T 1 MET4 T 22 LEU4 T 40 GLU4 T 72 HIS4 T 83 GLU4 T 91 LYS4 T 121 ARG4 T 149 LEU4 T 179 THR4 T 202 ILE4 T 228 HIS4 T 245 MET4 T 274 ARG4 T 276 ASN4 T 286 MET4 T 351 PHE4 T 362 GLU4 T 394 GLU5 U 77 VAL5 U 140 HIS5 U 163 GLU5 U 165 PHE5 U 173 THR5 U 197 ASP5 U 267 PHE6 V 112 PHE6 V 120 GLU6 V 285 ASP7 W 98 HIS7 W 110 CYS7 W 161 ASP7 W 167 LEU7 W 173 THR7 W 202 GLN8 X 33 THR8 X 46 LEU
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Page 52 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type8 X 70 GLU8 X 80 ARG8 X 132 ASP8 X 142 GLU8 X 165 ARG1 Y 94 LEU1 Y 182 ASP1 Y 208 TYR1 Y 226 ASP1 Y 287 CYS1 Y 294 LEU1 Y 315 ASP1 Y 342 LEU1 Y 408 ARG1 Y 498 ASN2 Z 84 ASN2 Z 162 ARG2 Z 193 GLN2 Z 208 GLN2 Z 239 GLU2 Z 247 ARG2 Z 342 PHE3 a 52 GLN3 a 124 LEU3 a 167 MET3 a 212 PRO3 a 221 LEU3 a 362 ASP3 a 365 GLU4 b 22 LEU4 b 55 GLU4 b 72 HIS4 b 83 GLU4 b 91 LYS4 b 121 ARG4 b 149 LEU4 b 202 ILE4 b 228 HIS4 b 245 MET4 b 264 LEU4 b 274 ARG4 b 276 ASN
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Page 53 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type4 b 286 MET4 b 351 PHE4 b 362 GLU4 b 394 GLU5 c 77 VAL5 c 140 HIS5 c 163 GLU5 c 165 PHE5 c 173 THR5 c 267 PHE6 d 112 PHE6 d 120 GLU6 d 285 ASP7 e 98 HIS7 e 110 CYS7 e 161 ASP7 e 167 LEU7 e 173 THR7 e 202 GLN8 f 33 THR8 f 46 LEU8 f 70 GLU8 f 80 ARG8 f 132 ASP8 f 142 GLU8 f 165 ARG1 g 94 LEU1 g 106 HIS1 g 182 ASP1 g 208 TYR1 g 226 ASP1 g 287 CYS1 g 294 LEU1 g 315 ASP1 g 342 LEU1 g 408 ARG1 g 498 ASN2 h 84 ASN2 h 162 ARG2 h 193 GLN2 h 208 GLN2 h 239 GLU
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Page 54 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type2 h 247 ARG2 h 342 PHE3 i 52 GLN3 i 124 LEU3 i 167 MET3 i 221 LEU3 i 362 ASP3 i 365 GLU3 i 370 PRO4 j 1 MET4 j 22 LEU4 j 40 GLU4 j 72 HIS4 j 83 GLU4 j 91 LYS4 j 100 GLU4 j 121 ARG4 j 149 LEU4 j 202 ILE4 j 227 LYS4 j 228 HIS4 j 245 MET4 j 272 ILE4 j 274 ARG4 j 276 ASN4 j 286 MET4 j 351 PHE4 j 362 GLU4 j 394 GLU5 k 77 VAL5 k 140 HIS5 k 163 GLU5 k 165 PHE5 k 173 THR5 k 267 PHE6 l 112 PHE6 l 120 GLU6 l 285 ASP7 m 98 HIS7 m 110 CYS7 m 161 ASP7 m 167 LEU
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Continued from previous page...Mol Chain Res Type7 m 173 THR7 m 202 GLN8 n 33 THR8 n 46 LEU8 n 70 GLU8 n 80 ARG8 n 132 ASP8 n 142 GLU8 n 165 ARG1 o 94 LEU1 o 182 ASP1 o 208 TYR1 o 226 ASP1 o 287 CYS1 o 294 LEU1 o 315 ASP1 o 342 LEU1 o 408 ARG1 o 498 ASN2 p 84 ASN2 p 162 ARG2 p 193 GLN2 p 208 GLN2 p 239 GLU2 p 247 ARG2 p 342 PHE3 q 52 GLN3 q 124 LEU3 q 167 MET3 q 221 LEU3 q 362 ASP3 q 365 GLU4 r 22 LEU4 r 40 GLU4 r 72 HIS4 r 83 GLU4 r 91 LYS4 r 105 SER4 r 121 ARG4 r 149 LEU4 r 202 ILE4 r 228 HIS
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Continued from previous page...Mol Chain Res Type4 r 245 MET4 r 274 ARG4 r 276 ASN4 r 286 MET4 r 351 PHE4 r 362 GLU4 r 394 GLU5 s 77 VAL5 s 140 HIS5 s 163 GLU5 s 165 PHE5 s 173 THR5 s 267 PHE6 t 112 PHE6 t 120 GLU6 t 285 ASP7 u 98 HIS7 u 110 CYS7 u 161 ASP7 u 167 LEU7 u 173 THR7 u 202 GLN8 v 33 THR8 v 46 LEU8 v 70 GLU8 v 80 ARG8 v 132 ASP8 v 142 GLU8 v 165 ARG
Some sidechains can be flipped to improve hydrogen bonding and reduce clashes. All (37) suchsidechains are listed below:
Mol Chain Res Type1 A 324 ASN2 B 35 GLN2 B 84 ASN6 F 284 ASN1 I 324 ASN1 I 467 GLN1 I 483 GLN2 J 35 GLN2 J 84 ASN
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Continued from previous page...Mol Chain Res Type6 N 284 ASN7 O 196 ASN1 Q 106 HIS1 Q 324 ASN2 R 35 GLN2 R 84 ASN6 V 284 ASN1 Y 324 ASN2 Z 35 GLN2 Z 84 ASN4 b 125 GLN5 c 321 GLN6 d 284 ASN1 g 106 HIS1 g 324 ASN2 h 35 GLN2 h 84 ASN4 j 240 GLN4 j 375 GLN5 k 321 GLN1 o 324 ASN2 p 35 GLN2 p 84 ASN4 r 19 HIS4 r 240 GLN4 r 277 GLN4 r 375 GLN5 s 321 GLN
5.3.3 RNA i○
There are no RNA molecules in this entry.
5.4 Non-standard residues in protein, DNA, RNA chains i○
There are no non-standard protein/DNA/RNA residues in this entry.
5.5 Carbohydrates i○
There are no carbohydrates in this entry.
Page 58 Full wwPDB X-ray Structure Validation Report 4WSN
5.6 Ligand geometry i○
Of 6 ligands modelled in this entry, 6 are monoatomic - leaving 0 for Mogul analysis.
There are no bond length outliers.
There are no bond angle outliers.
There are no chirality outliers.
There are no torsion outliers.
There are no ring outliers.
No monomer is involved in short contacts.
5.7 Other polymers i○
There are no such residues in this entry.
5.8 Polymer linkage issues i○
The following chains have linkage breaks:
Mol Chain Number of breaks2 p 12 J 16 d 12 h 12 B 14 j 16 V 12 Z 16 N 14 r 12 R 16 F 1
All chain breaks are listed below:
Model Chain Residue-1 Atom-1 Residue-2 Atom-2 Distance (Å)1 r 290:LYS C 291:ALA N 3.621 J 193:GLN C 194:LEU N 2.881 B 193:GLN C 194:LEU N 2.871 R 193:GLN C 194:LEU N 2.861 p 193:GLN C 194:LEU N 2.85
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Page 59 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Model Chain Residue-1 Atom-1 Residue-2 Atom-2 Distance (Å)
1 Z 193:GLN C 194:LEU N 2.831 h 193:GLN C 194:LEU N 2.811 j 290:LYS C 291:ALA N 2.531 F 217:VAL C 218:ALA N 1.801 N 217:VAL C 218:ALA N 1.791 d 217:VAL C 218:ALA N 1.781 V 217:VAL C 218:ALA N 1.75
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6 Fit of model and data i○
6.1 Protein, DNA and RNA chains i○
In the following table, the column labelled ‘#RSRZ> 2’ contains the number (and percentage)of RSRZ outliers, followed by percent RSRZ outliers for the chain as percentile scores relative toall X-ray entries and entries of similar resolution. The OWAB column contains the minimum,median, 95th percentile and maximum values of the occupancy-weighted average B-factor perresidue. The column labelled ‘Q< 0.9’ lists the number of (and percentage) of residues with anaverage occupancy less than 0.9.
Mol Chain Analysed <RSRZ> #RSRZ>2 OWAB(Å2) Q<0.9
1 A 419/480 (87%) 0.41 21 (5%) 29 26 60, 128, 170, 185 0
1 I 419/480 (87%) 0.48 33 (7%) 12 12 67, 120, 169, 191 0
1 Q 419/480 (87%) 0.48 31 (7%) 14 14 81, 121, 167, 197 0
1 Y 419/480 (87%) 0.31 18 (4%) 35 30 68, 108, 148, 176 0
1 g 419/480 (87%) 0.40 24 (5%) 24 22 80, 111, 161, 190 0
1 o 419/480 (87%) 0.29 16 (3%) 40 33 75, 109, 168, 189 0
2 B 403/447 (90%) 0.42 25 (6%) 20 19 65, 127, 155, 189 0
2 J 403/447 (90%) 0.34 21 (5%) 27 25 70, 125, 159, 172 0
2 R 403/447 (90%) 0.30 20 (4%) 29 26 75, 108, 139, 163 0
2 Z 403/447 (90%) 0.46 29 (7%) 15 14 68, 139, 167, 189 0
2 h 403/447 (90%) 0.43 25 (6%) 20 19 85, 135, 176, 202 0
2 p 403/447 (90%) 0.38 24 (5%) 22 20 81, 126, 165, 179 0
3 C 401/427 (93%) 0.32 14 (3%) 44 36 58, 118, 219, 260 0
3 K 401/427 (93%) 0.34 15 (3%) 41 34 69, 118, 201, 220 0
3 S 401/427 (93%) 0.28 15 (3%) 41 34 68, 99, 195, 216 0
3 a 401/427 (93%) 0.42 22 (5%) 25 23 69, 134, 218, 238 0
3 i 401/427 (93%) 0.30 14 (3%) 44 36 81, 114, 207, 257 0
3 q 401/427 (93%) 0.25 12 (2%) 50 41 77, 116, 208, 249 0
4 D 406/410 (99%) 0.86 61 (15%) 2 3 68, 145, 251, 272 0
4 L 406/410 (99%) 0.70 52 (12%) 3 5 80, 152, 188, 216 0
4 T 406/410 (99%) 0.72 48 (11%) 4 6 88, 131, 183, 209 0
4 b 406/410 (99%) 1.12 83 (20%) 1 2 73, 166, 243, 253 0
4 j 406/410 (99%) 0.76 56 (13%) 3 4 86, 132, 269, 285 0
4 r 406/410 (99%) 0.83 55 (13%) 3 4 81, 162, 253, 272 0Continued on next page...
Page 61 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Analysed <RSRZ> #RSRZ>2 OWAB(Å2) Q<0.9
5 E 298/325 (91%) 0.53 26 (8%) 10 10 73, 112, 148, 170 0
5 M 298/325 (91%) 0.59 27 (9%) 9 9 78, 107, 159, 185 0
5 U 298/325 (91%) 0.60 29 (9%) 8 8 89, 121, 174, 198 0
5 c 298/325 (91%) 0.43 21 (7%) 16 15 61, 88, 126, 144 0
5 k 298/325 (91%) 0.46 20 (6%) 18 16 85, 107, 145, 166 0
5 s 298/325 (91%) 0.52 23 (7%) 13 13 84, 108, 148, 170 0
6 F 288/331 (87%) 0.36 11 (3%) 40 33 62, 114, 153, 184 0
6 N 288/331 (87%) 0.41 12 (4%) 36 31 73, 113, 165, 193 0
6 V 288/331 (87%) 0.45 20 (6%) 17 15 84, 120, 160, 194 0
6 d 288/331 (87%) 0.33 7 (2%) 59 51 63, 97, 150, 185 0
6 l 288/331 (87%) 0.45 17 (5%) 22 20 84, 116, 156, 182 0
6 t 288/331 (87%) 0.44 23 (7%) 12 12 77, 116, 160, 190 0
7 G 208/222 (93%) 0.37 16 (7%) 13 13 92, 114, 162, 187 0
7 O 208/222 (93%) 0.32 16 (7%) 13 13 68, 115, 160, 181 0
7 W 208/222 (93%) 0.34 15 (7%) 15 14 111, 135, 161, 174 0
7 e 208/222 (93%) 0.32 11 (5%) 26 24 84, 106, 145, 168 0
7 m 208/222 (93%) 0.19 8 (3%) 40 33 72, 98, 143, 188 0
7 u 208/222 (93%) 0.27 7 (3%) 45 37 73, 111, 149, 164 0
8 H 173/213 (81%) 0.45 15 (8%) 10 10 82, 123, 154, 168 0
8 P 173/213 (81%) 0.46 17 (9%) 7 8 91, 121, 147, 161 0
8 X 173/213 (81%) 0.49 17 (9%) 7 8 91, 114, 142, 150 0
8 f 173/213 (81%) 0.60 26 (15%) 2 3 81, 169, 190, 196 0
8 n 173/213 (81%) 0.42 11 (6%) 19 17 98, 129, 164, 181 0
8 v 173/213 (81%) 0.53 18 (10%) 6 7 94, 139, 175, 187 0
All All 15576/17130 (90%) 0.47 1147 (7%) 14 14 58, 119, 209, 285 0
All (1147) RSRZ outliers are listed below:
Mol Chain Res Type RSRZ4 b 78 ASP 14.61 I 160 PRO 8.94 b 2 ALA 8.04 r 1 MET 7.45 U 189 TYR 7.3
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Page 62 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ3 C 54 HIS 7.24 r 16 SER 7.25 U 188 THR 7.01 Y 160 PRO 6.41 Q 160 PRO 6.44 b 77 PRO 6.46 l 170 SER 6.24 b 51 ALA 6.04 D 12 LEU 6.04 j 69 PHE 6.01 I 161 ALA 5.88 f 39 GLN 5.84 r 2 ALA 5.74 b 76 LEU 5.64 D 88 THR 5.45 E 110 GLN 5.45 M 146 TRP 5.34 b 14 ASN 5.34 D 11 GLN 5.34 D 151 ILE 5.34 b 41 GLN 5.34 D 8 ASP 5.24 b 79 SER 5.24 b 146 GLU 5.24 b 40 GLU 5.28 f 162 VAL 5.23 C 53 GLU 5.16 V 183 PHE 5.11 I 309 ALA 5.05 M 167 ALA 5.05 k 85 VAL 5.06 F 187 THR 5.04 T 350 GLY 5.05 M 189 TYR 5.08 f 37 TYR 4.98 X 71 LEU 4.94 D 9 LEU 4.95 s 103 THR 4.82 J 298 GLU 4.84 b 13 MET 4.84 D 148 TYR 4.84 L 148 TYR 4.7
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Page 63 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 r 99 PHE 4.75 M 110 GLN 4.74 D 34 ILE 4.74 r 62 SER 4.78 f 155 ALA 4.65 U 85 VAL 4.64 r 69 PHE 4.62 h 143 LYS 4.66 t 170 SER 4.62 p 71 ALA 4.51 Q 128 VAL 4.55 E 109 ALA 4.51 I 224 ALA 4.52 B 311 MET 4.58 f 154 GLN 4.54 D 16 SER 4.53 S 54 HIS 4.55 k 136 TRP 4.54 L 30 LEU 4.44 L 26 TYR 4.44 T 26 TYR 4.42 B 259 PHE 4.44 b 34 ILE 4.44 b 52 MET 4.44 T 152 ALA 4.42 h 293 PRO 4.45 U 167 ALA 4.45 s 29 TYR 4.35 s 78 MET 4.32 B 298 GLU 4.34 j 106 ILE 4.35 c 103 THR 4.38 P 37 TYR 4.34 T 30 LEU 4.34 D 7 GLN 4.31 A 309 ALA 4.31 g 420 ALA 4.38 P 38 GLY 4.26 t 211 SER 4.24 b 15 SER 4.23 a 28 ILE 4.25 E 167 ALA 4.2
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Page 64 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 j 58 SER 4.24 b 99 PHE 4.24 j 102 GLN 4.24 r 127 LEU 4.25 M 85 VAL 4.27 e 8 THR 4.25 s 221 TYR 4.12 B 293 PRO 4.11 I 114 ALA 4.14 b 168 ILE 4.14 j 16 SER 4.17 O 67 LEU 4.14 j 99 PHE 4.15 E 108 ASN 4.14 j 45 LEU 4.15 k 29 TYR 4.11 I 227 TYR 4.12 Z 308 ILE 4.14 D 152 ALA 4.11 A 82 LEU 4.14 b 11 GLN 4.15 s 90 MET 4.17 G 70 PHE 4.12 B 51 LEU 4.03 K 53 GLU 4.01 Y 78 GLU 4.04 b 80 THR 4.04 D 147 THR 4.08 f 92 THR 4.06 t 187 THR 4.04 b 48 PHE 4.01 Y 309 ALA 4.02 Z 298 GLU 4.02 J 308 ILE 4.03 a 54 HIS 4.01 o 160 PRO 4.01 o 78 GLU 4.04 D 127 LEU 4.02 p 143 LYS 4.05 M 84 LYS 4.07 u 8 THR 4.02 Z 293 PRO 3.9
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Page 65 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ3 a 53 GLU 3.92 h 67 TRP 3.97 m 195 ALA 3.94 L 29 ILE 3.94 j 127 LEU 3.93 C 170 CYS 3.95 k 78 MET 3.91 g 82 LEU 3.92 Z 311 MET 3.98 v 74 ILE 3.94 D 91 LYS 3.92 p 293 PRO 3.94 r 52 MET 3.95 M 186 PHE 3.84 r 5 VAL 3.84 D 124 ALA 3.86 t 37 GLY 3.88 f 38 GLY 3.84 b 139 TYR 3.85 s 52 PHE 3.83 S 92 HIS 3.84 L 188 LYS 3.82 Z 51 LEU 3.85 U 166 VAL 3.81 Q 117 MET 3.84 T 151 ILE 3.84 j 4 ALA 3.83 S 53 GLU 3.84 D 4 ALA 3.83 a 139 THR 3.84 b 12 LEU 3.77 O 70 PHE 3.78 v 38 GLY 3.73 a 140 SER 3.72 B 280 LEU 3.74 b 1 MET 3.72 Z 259 PHE 3.74 b 115 GLU 3.74 T 88 THR 3.74 b 150 LYS 3.74 r 123 ALA 3.74 L 207 ARG 3.7
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Page 66 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 b 81 ALA 3.74 D 193 ARG 3.74 b 49 VAL 3.76 N 187 THR 3.78 n 105 ILE 3.64 D 66 LEU 3.67 W 31 ILE 3.64 L 167 TYR 3.68 H 105 ILE 3.67 u 19 ALA 3.68 n 155 ALA 3.68 X 93 ILE 3.65 s 131 GLU 3.64 b 194 VAL 3.64 r 56 ASN 3.65 U 187 ARG 3.64 j 1 MET 3.64 T 48 PHE 3.68 n 39 GLN 3.64 T 22 LEU 3.64 r 66 LEU 3.64 r 3 ALA 3.67 m 70 PHE 3.64 r 4 ALA 3.67 O 63 THR 3.62 p 298 GLU 3.54 b 191 TYR 3.55 E 147 LEU 3.55 M 100 VAL 3.54 b 26 TYR 3.54 b 145 LEU 3.51 I 225 ARG 3.54 b 156 LEU 3.54 r 7 GLN 3.58 n 74 ILE 3.57 O 66 LEU 3.51 I 162 LEU 3.56 l 207 THR 3.56 V 211 SER 3.55 s 136 TRP 3.56 N 181 MET 3.52 B 281 VAL 3.5
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Page 67 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 r 8 ASP 3.54 T 89 LEU 3.44 r 260 ALA 3.45 s 85 VAL 3.45 c 189 TYR 3.45 k 187 ARG 3.41 I 226 ASP 3.44 D 85 TYR 3.47 e 46 LEU 3.44 L 211 LEU 3.44 L 48 PHE 3.44 j 103 VAL 3.48 f 105 ILE 3.41 Y 82 LEU 3.44 r 143 TYR 3.46 t 36 THR 3.42 p 80 PHE 3.45 s 202 GLU 3.45 U 103 THR 3.44 r 91 LYS 3.44 j 91 LYS 3.45 k 167 ALA 3.47 G 63 THR 3.44 D 10 ALA 3.42 J 311 MET 3.44 j 73 LEU 3.42 p 142 ALA 3.44 j 70 CYS 3.36 V 212 GLY 3.34 r 34 ILE 3.34 D 86 HIS 3.34 b 75 ASN 3.35 E 84 LYS 3.31 I 87 TYR 3.33 i 139 THR 3.36 F 215 SER 3.33 q 54 HIS 3.33 K 54 HIS 3.35 M 78 MET 3.36 t 209 THR 3.34 L 152 ALA 3.34 D 17 GLY 3.3
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Page 68 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ2 J 277 LEU 3.37 W 35 LEU 3.37 u 46 LEU 3.32 J 278 LYS 3.34 b 172 SER 3.31 I 320 LEU 3.37 O 31 ILE 3.31 Q 82 LEU 3.36 V 98 ILE 3.34 D 26 TYR 3.34 j 107 ARG 3.35 E 131 GLU 3.31 A 160 PRO 3.36 t 210 GLY 3.38 f 40 LEU 3.31 I 319 LEU 3.34 j 5 VAL 3.32 R 311 MET 3.32 p 34 ASN 3.33 K 303 TYR 3.38 H 37 TYR 3.34 b 53 VAL 3.36 l 210 GLY 3.38 n 125 TYR 3.24 j 88 THR 3.21 Q 227 TYR 3.26 t 208 ALA 3.28 f 153 TRP 3.24 b 98 SER 3.27 W 32 HIS 3.21 g 100 LEU 3.22 h 82 LEU 3.22 Z 281 VAL 3.21 I 111 ARG 3.27 W 63 THR 3.22 h 239 GLU 3.24 T 84 ILE 3.24 j 3 ALA 3.25 c 185 ALA 3.25 s 146 TRP 3.24 j 57 VAL 3.26 l 211 SER 3.2
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Page 69 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 D 189 VAL 3.22 h 81 LYS 3.26 N 174 ILE 3.24 D 226 LEU 3.28 f 93 ILE 3.24 L 193 ARG 3.21 Q 114 ALA 3.24 D 49 VAL 3.23 a 349 ALA 3.24 b 37 SER 3.27 G 31 ILE 3.25 U 282 ARG 3.28 v 155 ALA 3.27 G 35 LEU 3.25 E 205 THR 3.24 r 161 PRO 3.24 j 89 LEU 3.16 t 212 GLY 3.18 v 41 LEU 3.11 Q 207 HIS 3.11 Q 111 ARG 3.12 Z 54 PHE 3.15 c 187 ARG 3.17 e 160 ARG 3.15 E 187 ARG 3.15 s 188 THR 3.12 h 54 PHE 3.15 s 147 LEU 3.16 d 187 THR 3.11 Q 319 LEU 3.14 j 139 TYR 3.14 r 138 GLN 3.18 n 38 GLY 3.14 b 103 VAL 3.17 W 67 LEU 3.12 p 131 PHE 3.14 b 56 ASN 3.14 r 45 LEU 3.14 j 62 SER 3.18 P 105 ILE 3.11 A 126 PHE 3.15 U 131 GLU 3.1
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Page 70 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ6 t 207 THR 3.11 o 319 LEU 3.16 t 68 VAL 3.13 C 31 SER 3.14 j 138 GLN 3.14 r 32 LYS 3.14 j 66 LEU 3.14 b 107 ARG 3.15 M 195 PRO 3.17 G 43 PHE 3.12 h 298 GLU 3.13 i 272 PRO 3.14 j 6 ARG 3.12 p 92 TYR 3.15 U 108 ASN 3.18 X 45 LEU 3.14 b 88 THR 3.14 b 192 ALA 3.15 E 103 THR 3.15 c 94 ASP 3.12 Z 131 PHE 3.05 M 166 VAL 3.01 g 126 PHE 3.02 R 274 THR 3.05 U 200 PRO 3.04 T 23 ALA 3.04 b 187 TYR 3.02 B 292 ASN 3.04 j 61 ILE 3.01 I 103 ILE 3.02 p 119 ILE 3.04 b 188 LYS 3.04 r 145 LEU 3.08 f 42 ALA 3.07 G 67 LEU 3.04 T 150 LYS 3.06 l 182 LEU 3.04 L 88 THR 3.01 Q 161 ALA 3.03 S 91 GLU 3.01 g 309 ALA 3.04 j 156 LEU 3.0
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Page 71 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ8 H 39 GLN 3.04 b 89 LEU 3.01 Y 126 PHE 3.08 v 125 TYR 3.05 c 84 LYS 3.04 L 177 GLU 3.01 Y 79 ASN 3.04 L 226 LEU 3.02 Z 262 PHE 3.01 A 128 VAL 2.94 T 351 PHE 2.94 T 12 LEU 2.96 l 37 GLY 2.93 C 260 TYR 2.94 L 69 PHE 2.95 c 85 VAL 2.94 D 150 LYS 2.94 T 52 MET 2.92 B 282 LEU 2.95 c 186 PHE 2.94 j 190 CYS 2.92 Z 75 MET 2.91 I 100 LEU 2.94 b 45 LEU 2.97 G 46 LEU 2.98 f 77 VAL 2.92 B 294 PHE 2.92 B 296 SER 2.95 M 296 SER 2.91 A 319 LEU 2.93 C 28 ILE 2.94 D 145 LEU 2.96 l 88 GLU 2.97 O 46 LEU 2.94 r 103 VAL 2.95 U 146 TRP 2.95 U 196 PRO 2.98 f 41 LEU 2.93 K 12 VAL 2.94 b 108 GLN 2.94 r 124 ALA 2.94 b 9 LEU 2.9
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Page 72 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ6 l 212 GLY 2.97 W 70 PHE 2.98 H 113 THR 2.94 L 189 VAL 2.95 E 188 THR 2.94 D 15 SER 2.95 E 146 TRP 2.94 D 190 CYS 2.94 D 197 TYR 2.91 Q 115 LEU 2.92 Z 201 GLU 2.96 l 40 SER 2.93 a 27 LEU 2.94 j 87 PHE 2.92 R 293 PRO 2.95 E 85 VAL 2.95 k 188 THR 2.95 U 272 LYS 2.94 D 194 VAL 2.93 S 303 TYR 2.94 D 69 PHE 2.97 m 19 ALA 2.91 Q 309 ALA 2.96 l 187 THR 2.94 T 161 PRO 2.94 b 176 ASN 2.92 R 80 PHE 2.92 B 92 TYR 2.93 i 53 GLU 2.94 T 148 TYR 2.98 P 42 ALA 2.97 e 35 LEU 2.91 A 320 LEU 2.96 N 88 GLU 2.98 f 109 LEU 2.92 J 259 PHE 2.92 h 259 PHE 2.92 Z 92 TYR 2.81 o 269 GLU 2.87 W 66 LEU 2.81 g 505 PRO 2.84 b 190 CYS 2.8
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Page 73 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 L 144 LYS 2.87 e 70 PHE 2.81 o 109 THR 2.82 h 294 PHE 2.83 K 92 HIS 2.84 b 3 ALA 2.86 d 241 TYR 2.85 U 78 MET 2.86 l 36 THR 2.84 L 111 ALA 2.84 r 107 ARG 2.88 P 41 LEU 2.82 Z 144 ASN 2.88 f 128 ILE 2.81 A 227 TYR 2.85 c 147 LEU 2.84 T 207 ARG 2.84 L 190 CYS 2.85 M 49 HIS 2.87 G 47 LEU 2.81 A 221 TYR 2.86 V 252 PHE 2.81 g 319 LEU 2.85 E 49 HIS 2.84 b 152 ALA 2.85 c 109 ALA 2.81 g 84 LEU 2.86 V 207 THR 2.88 X 74 ILE 2.85 U 190 PRO 2.86 t 257 LEU 2.84 T 189 VAL 2.85 M 136 TRP 2.84 r 90 GLU 2.85 k 84 LYS 2.85 c 188 THR 2.87 O 35 LEU 2.82 J 293 PRO 2.82 R 298 GLU 2.84 T 61 ILE 2.81 Y 231 ALA 2.74 j 60 VAL 2.7
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Page 74 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ8 P 30 GLY 2.74 D 156 LEU 2.75 E 166 VAL 2.71 I 82 LEU 2.73 q 181 PHE 2.76 l 183 PHE 2.72 h 209 LYS 2.72 h 299 ALA 2.74 b 92 ILE 2.75 E 189 TYR 2.78 f 113 THR 2.74 D 123 ALA 2.78 H 109 LEU 2.75 c 24 SER 2.78 P 74 ILE 2.76 t 181 MET 2.74 L 85 TYR 2.74 j 108 GLN 2.74 r 89 LEU 2.75 k 186 PHE 2.71 I 115 LEU 2.75 E 78 MET 2.72 B 123 LYS 2.74 j 41 GLN 2.74 j 49 VAL 2.78 f 130 ALA 2.73 i 303 TYR 2.75 k 221 TYR 2.74 b 65 LEU 2.76 F 173 ASP 2.73 q 260 TYR 2.71 A 390 LEU 2.72 Z 30 VAL 2.72 p 442 LEU 2.74 b 143 TYR 2.74 j 143 TYR 2.71 Q 238 CYS 2.71 Q 307 LEU 2.74 T 190 CYS 2.71 o 126 PHE 2.75 M 147 LEU 2.77 W 43 PHE 2.7
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Page 75 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ2 h 119 ILE 2.75 c 99 PRO 2.72 B 308 ILE 2.73 K 39 LEU 2.74 j 124 ALA 2.75 U 296 SER 2.76 d 189 THR 2.75 M 103 THR 2.75 M 131 GLU 2.76 t 206 MET 2.74 j 260 ALA 2.73 K 307 ILE 2.74 D 231 HIS 2.74 L 151 ILE 2.74 b 82 LYS 2.73 S 139 THR 2.74 r 190 CYS 2.72 p 81 LYS 2.63 C 131 MET 2.61 I 196 SER 2.62 h 221 SER 2.66 d 242 VAL 2.65 U 29 TYR 2.64 j 191 TYR 2.64 b 149 LEU 2.65 U 110 GLN 2.66 l 181 MET 2.63 q 53 GLU 2.66 F 213 GLU 2.66 N 173 ASP 2.64 D 110 LEU 2.65 U 198 GLU 2.64 b 147 THR 2.64 r 147 THR 2.61 Q 87 TYR 2.61 Y 221 TYR 2.61 A 107 CYS 2.62 p 54 PHE 2.63 a 39 LEU 2.65 k 146 TRP 2.66 d 159 LYS 2.66 t 169 GLU 2.6
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Page 76 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ8 v 106 MET 2.65 M 200 PRO 2.66 V 174 ILE 2.64 L 153 ARG 2.64 r 70 CYS 2.67 O 43 PHE 2.64 T 66 LEU 2.64 T 29 ILE 2.64 r 98 SER 2.61 Q 223 ARG 2.62 Z 55 GLN 2.62 B 240 CYS 2.62 J 237 ILE 2.68 X 37 TYR 2.66 F 191 ALA 2.61 Q 118 ALA 2.66 V 87 PHE 2.64 b 61 ILE 2.64 r 168 ILE 2.63 S 138 LEU 2.64 L 214 LYS 2.64 b 211 LEU 2.64 L 197 TYR 2.64 T 121 ARG 2.61 I 121 PHE 2.63 K 95 TYR 2.63 C 358 VAL 2.64 j 145 LEU 2.68 H 38 GLY 2.67 e 43 PHE 2.62 Z 240 CYS 2.62 p 75 MET 2.63 K 131 MET 2.65 c 296 SER 2.64 D 6 ARG 2.64 L 174 LEU 2.61 Q 194 LYS 2.63 C 127 ALA 2.64 L 209 ASN 2.63 a 260 TYR 2.67 u 170 ILE 2.63 i 8 PHE 2.6
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Page 77 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ1 I 197 ILE 2.51 Q 121 PHE 2.52 Z 239 GLU 2.58 P 39 GLN 2.58 f 125 TYR 2.54 L 66 LEU 2.54 T 211 LEU 2.53 C 178 ALA 2.53 a 347 ILE 2.54 D 254 ARG 2.55 c 167 ALA 2.51 g 87 TYR 2.56 N 252 PHE 2.58 P 71 LEU 2.55 M 129 ARG 2.52 h 47 PRO 2.54 j 123 ALA 2.51 I 390 LEU 2.51 Q 320 LEU 2.53 i 138 LEU 2.51 A 287 CYS 2.53 a 58 VAL 2.54 b 91 LYS 2.55 U 84 LYS 2.53 a 131 MET 2.54 j 59 LEU 2.56 V 36 THR 2.56 l 38 SER 2.51 Q 234 VAL 2.56 t 69 ILE 2.53 i 54 HIS 2.55 U 136 TRP 2.53 S 131 MET 2.58 P 133 PHE 2.53 i 349 ALA 2.54 b 185 ILE 2.51 I 128 VAL 2.52 Z 277 LEU 2.55 M 190 PRO 2.53 q 94 ARG 2.54 b 193 ARG 2.56 N 159 LYS 2.5
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Page 78 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ7 W 139 ASP 2.58 H 167 PRO 2.58 v 77 VAL 2.52 Z 111 SER 2.52 Z 258 PHE 2.51 I 110 LEU 2.54 j 7 GLN 2.56 t 89 LEU 2.52 B 241 GLY 2.53 C 55 SER 2.56 l 208 ALA 2.55 E 100 VAL 2.58 n 41 LEU 2.55 E 202 GLU 2.55 k 24 SER 2.57 m 23 LYS 2.54 T 34 ILE 2.54 D 144 LYS 2.54 b 42 LEU 2.54 r 132 LEU 2.58 v 42 ALA 2.54 D 161 PRO 2.51 g 185 LEU 2.52 p 279 TYR 2.53 C 317 LEU 2.54 L 110 LEU 2.54 D 188 LYS 2.46 V 88 GLU 2.41 Q 390 LEU 2.44 D 154 LEU 2.44 b 127 LEU 2.41 I 78 GLU 2.44 b 38 GLY 2.48 H 77 VAL 2.44 j 63 ARG 2.45 s 110 GLN 2.44 D 13 MET 2.44 T 80 THR 2.46 N 135 ASP 2.46 d 191 ALA 2.42 R 175 LEU 2.45 E 296 SER 2.4
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Page 79 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ7 O 92 GLN 2.44 T 154 LEU 2.46 N 191 ALA 2.48 X 38 GLY 2.48 f 164 PRO 2.42 J 296 SER 2.43 a 85 ILE 2.43 q 326 VAL 2.41 Y 227 TYR 2.44 j 85 TYR 2.42 B 277 LEU 2.48 v 137 VAL 2.42 J 299 ALA 2.44 T 27 ARG 2.44 r 167 TYR 2.48 H 133 PHE 2.41 g 504 SER 2.41 Y 114 ALA 2.44 b 39 ALA 2.42 h 237 ILE 2.44 r 185 ILE 2.48 X 125 TYR 2.43 K 299 LEU 2.48 X 109 LEU 2.44 D 72 HIS 2.44 L 27 ARG 2.44 j 76 LEU 2.44 j 211 LEU 2.48 P 45 LEU 2.44 b 44 ALA 2.41 g 188 TYR 2.46 F 189 THR 2.46 V 187 THR 2.48 n 133 PHE 2.45 c 98 LEU 2.45 k 202 GLU 2.47 G 196 ASN 2.48 X 124 ALA 2.42 R 278 LYS 2.44 r 106 ILE 2.45 M 109 ALA 2.45 s 167 ALA 2.4
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Page 80 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 D 246 LEU 2.48 H 24 GLU 2.42 R 292 ASN 2.48 P 13 PHE 2.44 L 108 GLN 2.44 b 138 GLN 2.44 b 163 GLN 2.45 k 147 LEU 2.41 Y 420 ALA 2.42 Z 442 LEU 2.44 r 48 PHE 2.45 U 297 GLU 2.41 I 107 CYS 2.41 Q 287 CYS 2.48 v 153 TRP 2.42 B 131 PHE 2.43 S 5 LEU 2.43 a 181 PHE 2.47 G 159 GLY 2.41 Q 196 SER 2.41 I 223 ARG 2.41 o 194 LYS 2.45 E 186 PHE 2.45 M 272 LYS 2.45 c 139 SER 2.41 A 87 TYR 2.45 U 197 ASP 2.42 B 239 GLU 2.46 t 35 VAL 2.42 p 311 MET 2.44 T 174 LEU 2.45 U 186 PHE 2.43 a 170 CYS 2.44 r 194 VAL 2.42 R 277 LEU 2.32 Z 202 ILE 2.38 P 109 LEU 2.35 s 100 VAL 2.32 R 201 GLU 2.38 n 106 MET 2.34 r 88 THR 2.32 J 410 GLU 2.3
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Page 81 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 T 178 SER 2.32 h 194 LEU 2.31 g 269 GLU 2.34 j 34 ILE 2.36 l 147 GLU 2.31 I 131 TYR 2.32 R 281 VAL 2.34 D 174 LEU 2.38 v 133 PHE 2.37 O 159 GLY 2.32 p 194 LEU 2.37 W 46 LEU 2.38 v 105 ILE 2.34 T 155 TYR 2.34 T 226 LEU 2.34 b 164 ALA 2.33 q 131 MET 2.31 I 346 VAL 2.32 J 67 TRP 2.35 U 109 ALA 2.38 v 43 LEU 2.33 K 28 ILE 2.36 V 181 MET 2.38 X 68 ASN 2.34 L 121 ARG 2.33 a 9 VAL 2.34 D 126 VAL 2.34 b 174 LEU 2.35 M 77 VAL 2.37 m 46 LEU 2.32 B 299 ALA 2.38 P 209 ASN 2.34 D 84 ILE 2.34 L 49 VAL 2.36 t 40 SER 2.33 S 170 CYS 2.38 v 118 PHE 2.37 e 170 ILE 2.38 f 74 ILE 2.32 J 280 LEU 2.32 R 131 PHE 2.37 O 196 ASN 2.3
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Page 82 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ1 o 287 CYS 2.36 F 98 ILE 2.37 e 31 ILE 2.37 G 88 LEU 2.31 Y 198 ARG 2.32 B 71 ALA 2.34 L 78 ASP 2.34 T 228 HIS 2.38 v 121 VAL 2.34 L 22 LEU 2.34 L 156 LEU 2.33 a 33 GLU 2.31 A 315 ASP 2.32 h 51 LEU 2.34 T 124 ALA 2.34 b 183 LEU 2.38 f 108 ALA 2.32 Z 180 GLN 2.34 T 14 ASN 2.34 L 34 ILE 2.35 M 143 TYR 2.35 s 201 SER 2.32 J 30 VAL 2.33 S 118 LEU 2.36 F 90 LEU 2.36 V 206 MET 2.35 c 100 VAL 2.38 f 36 VAL 2.32 p 79 ASN 2.38 H 46 LEU 2.32 R 259 PHE 2.32 h 80 PHE 2.35 U 195 PRO 2.32 R 237 ILE 2.32 R 279 TYR 2.34 D 216 ILE 2.34 b 113 ILE 2.38 v 39 GLN 2.31 I 118 ALA 2.34 T 32 LYS 2.35 U 201 SER 2.34 D 70 CYS 2.3
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Page 83 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 L 145 LEU 2.34 T 145 LEU 2.34 T 231 HIS 2.31 A 207 HIS 2.23 K 260 TYR 2.23 a 217 SER 2.22 h 71 ALA 2.28 n 42 ALA 2.21 Q 77 VAL 2.21 Y 225 ARG 2.21 g 225 ARG 2.22 J 282 LEU 2.23 C 181 PHE 2.21 g 127 ASN 2.21 o 320 LEU 2.22 B 210 ASN 2.22 Z 292 ASN 2.21 Q 237 MET 2.21 o 489 MET 2.27 O 170 ILE 2.22 p 258 PHE 2.24 r 58 SER 2.21 Y 134 ILE 2.22 R 77 LYS 2.27 u 160 ARG 2.25 c 95 SER 2.24 j 36 LEU 2.22 B 278 LYS 2.24 L 147 THR 2.26 F 261 TYR 2.24 r 15 SER 2.25 E 29 TYR 2.24 L 150 LYS 2.25 M 188 THR 2.21 o 118 ALA 2.24 T 86 HIS 2.25 s 109 ALA 2.28 X 48 ASN 2.25 s 187 ARG 2.22 R 72 LEU 2.24 j 194 VAL 2.24 r 258 LEU 2.2
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Page 84 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ6 V 182 LEU 2.27 G 195 ALA 2.28 H 162 VAL 2.23 a 142 HIS 2.21 Q 162 LEU 2.24 T 188 LYS 2.28 P 153 TRP 2.21 o 192 SER 2.22 p 400 GLY 2.24 D 111 ALA 2.23 S 260 TYR 2.24 L 376 SER 2.27 e 196 ASN 2.22 J 309 LEU 2.24 r 17 GLY 2.28 f 46 LEU 2.28 X 153 TRP 2.23 q 272 PRO 2.24 T 49 VAL 2.24 b 294 ALA 2.24 b 249 LEU 2.27 W 64 PHE 2.21 A 225 ARG 2.25 E 190 PRO 2.26 l 169 GLU 2.21 Q 119 LEU 2.21 g 135 HIS 2.21 g 238 CYS 2.22 p 176 HIS 2.24 L 70 CYS 2.26 F 179 ALA 2.24 D 233 THR 2.25 k 103 THR 2.23 C 12 VAL 2.23 i 99 THR 2.27 m 31 ILE 2.22 Z 310 ALA 2.23 i 181 PHE 2.24 L 32 LYS 2.27 O 139 ASP 2.27 e 63 THR 2.28 X 113 THR 2.2
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Continued from previous page...Mol Chain Res Type RSRZ2 B 80 PHE 2.24 L 132 LEU 2.24 r 211 LEU 2.24 L 170 ARG 2.24 b 64 GLN 2.24 r 189 VAL 2.28 v 60 ILE 2.24 b 33 ALA 2.24 j 48 PHE 2.26 d 183 PHE 2.24 j 17 GLY 2.26 t 67 GLN 2.22 J 292 ASN 2.24 D 143 TYR 2.24 b 213 TYR 2.26 t 183 PHE 2.22 J 54 PHE 2.22 Z 309 LEU 2.21 g 291 LEU 2.14 L 9 LEU 2.14 b 173 LEU 2.11 o 87 TYR 2.18 H 92 THR 2.14 r 130 ILE 2.15 M 50 HIS 2.15 k 50 HIS 2.14 T 99 PHE 2.17 O 160 ARG 2.18 v 71 LEU 2.17 W 8 THR 2.17 W 170 ILE 2.14 D 318 ASN 2.14 L 254 ARG 2.16 V 89 LEU 2.15 c 78 MET 2.11 I 189 LYS 2.11 o 110 LEU 2.11 I 127 ASN 2.13 K 65 LYS 2.15 E 168 VAL 2.13 a 96 ALA 2.13 a 270 ASN 2.1
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Continued from previous page...Mol Chain Res Type RSRZ4 T 260 ALA 2.13 S 181 PHE 2.17 m 18 LEU 2.15 k 201 SER 2.16 t 264 CYS 2.18 X 42 ALA 2.16 V 108 LYS 2.16 t 189 THR 2.14 b 86 HIS 2.14 j 98 SER 2.14 j 132 LEU 2.11 I 287 CYS 2.12 Z 237 ILE 2.14 T 19 HIS 2.14 b 72 HIS 2.17 u 198 HIS 2.14 T 229 ALA 2.17 u 70 PHE 2.18 f 163 LEU 2.11 o 189 LYS 2.13 i 176 TYR 2.15 c 90 MET 2.15 U 99 PRO 2.16 F 257 LEU 2.11 I 126 PHE 2.11 g 141 ALA 2.14 L 260 ALA 2.14 T 15 SER 2.14 L 230 LEU 2.14 j 168 ILE 2.16 N 131 PRO 2.13 i 260 TYR 2.16 N 183 PHE 2.18 f 13 PHE 2.16 V 86 SER 2.15 s 31 TYR 2.12 h 258 PHE 2.16 V 131 PRO 2.18 H 71 LEU 2.12 h 262 PHE 2.15 E 59 ALA 2.11 g 138 LEU 2.1
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Page 87 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ3 q 56 LEU 2.15 k 270 SER 2.17 G 66 LEU 2.17 G 160 ARG 2.15 s 99 PRO 2.12 p 239 GLU 2.16 V 208 ALA 2.18 X 77 VAL 2.11 o 227 TYR 2.13 a 307 ILE 2.15 E 99 PRO 2.11 Q 226 ASP 2.11 Y 315 ASP 2.14 r 57 VAL 2.14 D 230 LEU 2.15 k 86 ASP 2.17 G 19 ALA 2.14 D 92 ILE 2.12 J 143 LYS 2.12 p 277 LEU 2.14 r 85 TYR 2.18 n 128 ILE 2.14 j 65 LEU 2.12 h 176 HIS 2.14 j 170 ARG 2.12 R 81 LYS 2.12 R 400 GLY 2.13 K 52 GLN 2.13 i 226 LYS 2.15 s 263 THR 2.14 r 164 ALA 2.16 N 38 SER 2.11 Y 87 TYR 2.02 J 302 TYR 2.02 h 131 PHE 2.18 P 128 ILE 2.12 R 312 THR 2.04 r 36 LEU 2.04 r 156 LEU 2.06 V 135 ASP 2.01 A 449 ILE 2.07 W 215 ASN 2.0
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Page 88 Full wwPDB X-ray Structure Validation Report 4WSN
Continued from previous page...Mol Chain Res Type RSRZ4 L 223 LEU 2.04 b 30 LEU 2.08 X 162 VAL 2.01 g 97 ILE 2.02 B 237 ILE 2.02 Z 241 GLY 2.05 k 49 HIS 2.08 P 96 HIS 2.04 T 62 SER 2.04 D 139 TYR 2.01 g 346 VAL 2.02 h 115 ILE 2.08 H 78 GLY 2.01 A 460 LEU 2.01 g 115 LEU 2.04 L 155 TYR 2.01 Q 329 GLY 2.01 A 115 LEU 2.01 Y 207 HIS 2.01 g 189 LYS 2.05 M 29 TYR 2.07 W 195 ALA 2.03 i 12 VAL 2.04 j 153 ARG 2.07 m 15 PHE 2.02 p 82 LEU 2.03 q 211 THR 2.04 L 235 LEU 2.01 Y 101 GLN 2.01 A 223 ARG 2.04 D 165 GLU 2.03 S 24 LEU 2.07 e 27 LEU 2.01 A 78 GLU 2.03 q 307 ILE 2.04 L 192 ALA 2.03 q 69 PRO 2.04 D 125 GLN 2.04 r 61 ILE 2.05 s 98 LEU 2.08 X 70 GLU 2.04 b 57 VAL 2.0
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Continued from previous page...Mol Chain Res Type RSRZ3 S 353 GLN 2.04 D 196 ASP 2.01 Q 225 ARG 2.02 J 212 LYS 2.03 K 399 VAL 2.07 G 41 TYR 2.07 O 78 TYR 2.07 O 142 ARG 2.0
6.2 Non-standard residues in protein, DNA, RNA chains i○
There are no non-standard protein/DNA/RNA residues in this entry.
6.3 Carbohydrates i○
There are no carbohydrates in this entry.
6.4 Ligands i○
In the following table, the Atoms column lists the number of modelled atoms in the group and thenumber defined in the chemical component dictionary. The B-factors column lists the minimum,median, 95th percentile and maximum values of B factors of atoms in the group. The columnlabelled ‘Q< 0.9’ lists the number of atoms with occupancy less than 0.9.
Mol Type Chain Res Atoms RSCC RSR B-factors(Å2) Q<0.99 ZN s 401 1/1 0.80 0.10 130,130,130,130 09 ZN M 401 1/1 0.93 0.15 130,130,130,130 09 ZN U 401 1/1 0.94 0.08 130,130,130,130 09 ZN k 401 1/1 0.97 0.10 130,130,130,130 09 ZN c 401 1/1 0.98 0.08 130,130,130,130 09 ZN E 401 1/1 0.99 0.17 130,130,130,130 0
6.5 Other polymers i○
There are no such residues in this entry.