Frey jisc digifest 2014

Science Ajar

The future of research: are you ready?

Jeremy G. Frey ProfeChem

15 March 2013

Jisc Digifest

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Intelligent Open Access to Data 11/03/2014

mediated

Much of Science is a “long tail” enterprise

Traditionally mediated asynchronously through the literature

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StructureGate

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Methods are as important as the data

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THE NARRATIVEWhat is the story? What is the why?

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Faraday’s laboratory notebooks are also remarkable in the amount

of detail that they give about the design and setting up of

experiments, interspersed with comments about their outcome

and thoughts of a more philosophical kind. All are couched in plain language, with many vivid phrases of delightful spontaneity….

Peter Day, ‘The Philosopher’s Tree: A Selection of Michael Faraday’s Writings’

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Scientific Narratives

RESOURCING


Talk Themes

• Co-sourcing

• In-Sourcing

• Out-sourcing

• Net-Sourcing

• Open Sourcing

• Single-Sourcing

• Crowd Sourcing


IDCC 2014 Meeting San Franciscohttp://www.dcc.ac.uk/events/idcc14/programme-presentations


The samples you need may already be available


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Subversive and furtive sharing &

exploitation of data in virtual

space RDF

OAI Taxi

E-

user

LabsDigital Repository

Data11/03/2014

Some projects need large amounts of data from the literature: access can be an issue

Someone will be able to do the experiments you need –

Perhaps better than you can


DISSEMINATION IS PART OF THE RESEARCH

Bringing dissemination in to the lab… use and re-use of data… the digital research notebook


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Smart Tea Project

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P2 - Plans & Provenance

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MoreTea: Tablet Interface and RDF World11/03/2014


LabTrove: Easy Communication

Images and sketch commenting

Highly inter-linked report

Digital and Physical Worlds


ElectronicLaboratoryNotebooks

ELNs

Comparison with traditional paper

notebooks

Communication Collaboration

SharingLinking

Curating

• Higher Quality Record• Natural linking to data

and external resources• Easier Collaboration• Improved planning

• Improved discussions• Efficiency gain in

production of presentations/reports

• Change the nature of Professor/Student

interactions

Impact on researchers


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Open Notebook Science• Certainly not always the way to work!

– IPR, Commercial, long term projects, recognition issues, etc

• But

– Makes connection much easier if the data and processes are “Open”

– Easy to export & access of “Linked-Data”

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It is not necessary to change.

Survival is not mandatory.W. Edwards Deming

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LabTrove Open Notebooks Mat Todd’s PZQ Project

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Validation

• Increasing the value of data

• How to bring all the necessary information together to enable appropriate validation

• Increasingly difficult & expensive to achieve

• Need provenance and context

• Essential step otherwise just a collection of items

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Publication@Source

This is a picture – why has the data been lost?


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Unavailable Information• Not just lots of data but why are many of

the structures unpublished so certainly unavailable?

• The E-Crystals and E-Bank Project looked at how to address this issue

• Is making data availablethe same as depositing a copy with someone else?

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BACK TO PLANS & PLANNING


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“In theory, there is no difference

between theory and practice.

But, in practice, there is.”

Unknown (possibly Yogi Berra or Manfred Eigen)

P&E Ontology: Planning• Prospective

provenance

• Describes a scientific experiment that will be enacted (in the future)

• Three entity types:

– Plan– Plan Stage– Plan Object


P&E Core Ontology: Enactment• Retrospective

provenance

• Describes a scientific experiment that was enacted

• Three entity types:

– Run– Stage– Object



Graph/Network provides intuitive

navigation

WHAT CAN WE LEARN FROM LEGO


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Change in the whole way we design and build

11/03/20143D Printers: A radical change to the experimental

section of a paper!

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Thanks & Acknowledgements

• UK e-Science & Digital Economy Programmes

• RCUK: EPSRC, BBSRC & TSB, JISC/ HEFCE, Microsoft & IBM, for funding and support

• Southampton Colleagues and Students from Chemistry, Electronics & Computer Science, Engineering, Mathematics/Statistics, iSolutions and the Library

• Colleagues at Bath/UKOLN, Oxford/OeRC, STFC, Reading, Penn State, Cornell, PNNL, UNSW, USyd

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Trust me Mort - no electronic communications superhighway, no matter how vast and sophisticated,

will ever replace the art of the schmooze

Thank you for listening

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Frey jisc digifest 2014

Science

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