Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a...

45
Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states tend to have fewer charges than an unfolded protein would have, due to the inaccessibility of many of the protonation sites. Increasing the sampling cone voltage may provide sufficient energy for the protein to begin to unfold and create a wider charge state distribution centering on more highly charged ions in the lower m/z region of the spectrum.
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Transcript of Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a...

Page 1: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

Folded and unfolded

Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states tend to have fewer charges than an unfolded protein would have, due to the inaccessibility of

many of the protonation sites.

Increasing the sampling cone voltage may provide sufficient energy for the protein to begin to unfold and create

a wider charge state distribution centering on more highly charged ions in the lower m/z region of the spectrum.

Page 2: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

Folded and unfolded statesHolo and apo proteins

30-Oct-199814:50:44apo-pseudoazurin + Cu BMB, The University of Leeds

600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000m/z0

100

%

0

100

%

SJ06 1 (1.242) Sm (SG, 2x1.00); Sb (10,10.00 ) Scan ES+ 9.15e5A9;1494.9

A101345.5

1223.7

1490.7

B81693.9

B91506.0

1513.01676.8

1706.5B7

1935.81718.6

SJ04 1 (1.415) Sm (SG, 2x1.00); Sb (10,10.00 ) Scan ES+ 2.08e6A15;893.0

A17788.0

744.5

A19705.3

A14956.7

A131030.3

958.5

A121116.0

1034.9

A111217.3 A10

1339.0 A91487.8

MW 13,381 Da apo-pseudoazurinanalysed in 1:1 aq. MeCN, pH 2

MW 13,444 Daapo-pseudoazurin with Cu bound analysed in water, pH 7

Page 3: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

Positive or Negative Ionisation? 

 If the sample has functional groups that readily accept a proton (H+) then positive ion detection is used

e.g. amines R-NH2 + H+ R-NH3+

as in proteins, peptides

 If the sample has functional groups that readily lose a proton then negative ion detection is used e.g. carboxylic acids R-CO2H R-CO2

– and alcohols R-OH R-O– as

in saccharides, oligonucleotides

Page 4: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 5: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 6: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 7: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

http://www.bmsf.unsw.edu.au/Follow link:

Training and education

WEB

Articles

Vestling, M.M.USING MASS SPECTROMETRY FOR PROTEINSJ. Chem. Ed. 2003, 80, 122

Page 8: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 9: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 10: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 11: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 12: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 13: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

AtmosphericPressure

Chemical Ionization

Page 14: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 15: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 16: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 17: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 18: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 19: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 20: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 21: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 22: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.

zV

1/2mv2=cost

Page 23: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 24: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 25: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 26: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 27: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 28: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 29: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 30: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 31: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 32: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 33: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 34: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 35: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 36: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 37: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 38: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 39: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 40: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 41: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 42: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 43: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 44: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.
Page 45: Folded and unfolded Proteins in their native state, tend to produce multiply charged ions covering a smaller range of charge states. These charge states.