Enzyme Catalysis and Allostery-A Century of Advances in Molecular Understanding
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Transcript of Enzyme Catalysis and Allostery-A Century of Advances in Molecular Understanding
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INTRODUCTION
Enzyme catalysis and allostery: a century of advances inmolecular understandingAthel Cornish-Bowden
Centre National de la Recherche Scientifique and Aix-Marseille Universite, France
Numerous anniversaries of interest to biochemists have
occurred in 2013, starting from Claude Bernards birth
in 1813, continuing with Victor Henris thesis in 1903,
Johannes Brnsteds protonic theory of acidbasecatalysis in 1923, the introduction of flow methods for
investigating fast reaction kinetics by Hamilton Har-
tridge and Francis Roughton in the same year, Jim
Watson and Francis Cricks determination of the
structure of DNA in 1953, Mo Clelands rationaliza-
tion of multi-substrate kinetics in 1963, and Henrik
Kacser and Jim Burnss introduction of metabolic con-
trol analysis in 1973. Two others stand out for enzy-
mologists: in 1913, Leonor Michaelis and Maud
Leonora Menten placed kinetic studies on a firm
experimental and theoretical basis [1] and, in 1963,
Jacques Monod, Jean-Pierre Changeux and FrancoisJacob introduced the concept of allosteric regulation
[2]. In this special issue of the FEBS Journal (the suc-
cessor to the Biochemische Zeitschrift, where Michaelis
and Menten published their paper), we commemorate
the 100th anniversary of the former, and the 50th
anniversary of the latter. The continuing importance
of both is well illlustrated by the two recent transla-
tions of Michaelis and Mentens paper into English
[3,4], and by the many recent reviews of allosteric reg-
ulation and models of cooperativity.
In this special issue, Ute Deichmann and colleagues
examine the historical context of Michaelis and Men-
tens paper, and discuss its relationship to what was
already known at the time, from Henris work in par-
ticular. Moving to the present day, various authors
review the status of kinetics in modern research: Santi-
ago Schnell on the validity of the steady-state assump-
tion; Jeremy Gunawardena on time separation; Judith
Klinman on kinetic isotope effects; Jeffrey Moffitt and
Carlos Bustamante on single-molecule studies, a topic
also developed by Santiago Schnell and colleagues;
Hanna Hardin and colleagues on kinetic aspects of
protein networks, with particular reference to phos-
photransferases; and Katia Tummler and colleagues
on dynamic modelling of enzyme networks. Such mod-
elling requires the characterization not just of one
enzyme but of the whole network, and Ulrike Wittig
and colleagues describe the challenges involved in set-
ting up an enzyme reaction database. That in turn
depends heavily on the classification of enzyme reac-
tions, a topic that has been greatly developed under
the aegis of the International Union of Biochemistry
and Molecular Biology since 1958; Andrew MacDon-
ald and Keith Tipton review the achievements in this
field and the difficulties that can arise. Anyone who
reads Michaelis and Mentens classic paper today can
only be impressed by how much they knew, how much
they understood, and how much care they took with
their analysis. In the century since then, some points
have tended to become forgotten, and Roger Goody
discusses the problems that arise when kinetic analysis
is not conducted with sufficient care and attention.
The link between Michaelis and Menten in 1913 and
Monod, Changeux and Jacob in 1963 is made by
Debashish Chowdhury in the context of molecular
motors, and John Gerhart describes the historical con-
text in which the ideas of enzyme regulation arose. It is
perhaps surprising that 50 years separate the two
papers: why did it take so long for deviations
from MichaelisMenten kinetics to be reported and
Athel Cornish-Bowden learned about MichaelisMenten kinetics when he was working for his DPhil at Oxford with Jer-
emy Knowles, and his postdoctoral research in Dan Koshlands laboratory at Berkeley led to an interest in mechanisms
of enzyme regulation. Subsequently, he spent 16 years in the Biochemistry Department at Birmingham, before moving
to the CNRS in Marseilles in 1987, where he is now Directeur de Recherche Emerite. His principal research interests
in recent years have been self-organization and the definition of life. He is the longest-serving member of the Editorial-
Advisory Board of the FEBS Journal, which he joined in 1984.
doi: 10.1111/febs.12695
FEBS Journal 281 (2014) 433434 2013 FEBS 433
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analysed? The explanation probably lies in the need to
establish the norm before exceptions to it could be rec-
ognized [5]: a century ago, extremely few enzymes had
been characterized, even superficially, and almost noth-
ing was known about their structures (this was in the
heyday of colloids) or about metabolic pathways and
how they might be regulated. The first paper on alloste-
ric interactions [2] continues to be well cited, although
perhaps overshadowed by the publication of models to
account for them [6,7] that it stimulated. The relation-
ship between these and other models is reviewed by
Athel Cornish-Bowden. Right from the outset haemo-
globin, as an honorary enzyme, was at the centre of
many discussions of these models because it offered
numerous advantages over any enzymes that had been
characterized 50 years ago, and it has continued to be
one of the most interesting and important examples of
allosteric regulation, as described by Maurizio Brunori.
Biochemistry has moved a long way from invertase
kinetics, first to allosteric regulation and the whole
development of metabolic regulation and control, and
now to detailed three-dimensional structures of
enzymes, details of their mechanisms of action, and,
most recently, studies of single molecules. In this spe-
cial issue of the FEBS Journal, we have attempted to
provide a rounded picture of this development.
References
1 Michaelis L & Menten ML (1913) Kinetik der
Invertinwirkung. Biochem Z 49, 333369.
2 Monod J, Changeux JP & Jacob F (1963) Allosteric
proteins and cellular control systems. J Mol Biol 6,
306329.
3 Johnson KA & Goody RS (2011) The original Michaelis
constant: translation of the 1913 MichaelisMenten
paper. Biochemistry 50, 82648269.
4 Michaelis L & Menten ML (2013) The kinetics of
invertin action (translated by T R C Boyde). FEBS Lett
587, 27122720.
5 Cardenas ML (2013) Michaelis and Menten and the long
road to the discovery of cooperativity. FEBS Lett 587,
27672771.
6 Monod J, Wyman J & Changeux JP (1965) On the
nature of allosteric transitions a plausible model.
J Mol Biol 12, 88118.
7 Koshland DE Jr, Nemethy G & Filmer D (1966)
Comparison of experimental binding data and
theoretical models in proteins containing subunits.
Biochemistry 5, 365385.
434 FEBS Journal 281 (2014) 433434 2013 FEBS
MichaelisMenten kinetics and allosteric regulation A. Cornish-Bowden