Enzyme Catalysis and Allostery-A Century of Advances in Molecular Understanding

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  • INTRODUCTION

    Enzyme catalysis and allostery: a century of advances inmolecular understandingAthel Cornish-Bowden

    Centre National de la Recherche Scientifique and Aix-Marseille Universite, France

    Numerous anniversaries of interest to biochemists have

    occurred in 2013, starting from Claude Bernards birth

    in 1813, continuing with Victor Henris thesis in 1903,

    Johannes Brnsteds protonic theory of acidbasecatalysis in 1923, the introduction of flow methods for

    investigating fast reaction kinetics by Hamilton Har-

    tridge and Francis Roughton in the same year, Jim

    Watson and Francis Cricks determination of the

    structure of DNA in 1953, Mo Clelands rationaliza-

    tion of multi-substrate kinetics in 1963, and Henrik

    Kacser and Jim Burnss introduction of metabolic con-

    trol analysis in 1973. Two others stand out for enzy-

    mologists: in 1913, Leonor Michaelis and Maud

    Leonora Menten placed kinetic studies on a firm

    experimental and theoretical basis [1] and, in 1963,

    Jacques Monod, Jean-Pierre Changeux and FrancoisJacob introduced the concept of allosteric regulation

    [2]. In this special issue of the FEBS Journal (the suc-

    cessor to the Biochemische Zeitschrift, where Michaelis

    and Menten published their paper), we commemorate

    the 100th anniversary of the former, and the 50th

    anniversary of the latter. The continuing importance

    of both is well illlustrated by the two recent transla-

    tions of Michaelis and Mentens paper into English

    [3,4], and by the many recent reviews of allosteric reg-

    ulation and models of cooperativity.

    In this special issue, Ute Deichmann and colleagues

    examine the historical context of Michaelis and Men-

    tens paper, and discuss its relationship to what was

    already known at the time, from Henris work in par-

    ticular. Moving to the present day, various authors

    review the status of kinetics in modern research: Santi-

    ago Schnell on the validity of the steady-state assump-

    tion; Jeremy Gunawardena on time separation; Judith

    Klinman on kinetic isotope effects; Jeffrey Moffitt and

    Carlos Bustamante on single-molecule studies, a topic

    also developed by Santiago Schnell and colleagues;

    Hanna Hardin and colleagues on kinetic aspects of

    protein networks, with particular reference to phos-

    photransferases; and Katia Tummler and colleagues

    on dynamic modelling of enzyme networks. Such mod-

    elling requires the characterization not just of one

    enzyme but of the whole network, and Ulrike Wittig

    and colleagues describe the challenges involved in set-

    ting up an enzyme reaction database. That in turn

    depends heavily on the classification of enzyme reac-

    tions, a topic that has been greatly developed under

    the aegis of the International Union of Biochemistry

    and Molecular Biology since 1958; Andrew MacDon-

    ald and Keith Tipton review the achievements in this

    field and the difficulties that can arise. Anyone who

    reads Michaelis and Mentens classic paper today can

    only be impressed by how much they knew, how much

    they understood, and how much care they took with

    their analysis. In the century since then, some points

    have tended to become forgotten, and Roger Goody

    discusses the problems that arise when kinetic analysis

    is not conducted with sufficient care and attention.

    The link between Michaelis and Menten in 1913 and

    Monod, Changeux and Jacob in 1963 is made by

    Debashish Chowdhury in the context of molecular

    motors, and John Gerhart describes the historical con-

    text in which the ideas of enzyme regulation arose. It is

    perhaps surprising that 50 years separate the two

    papers: why did it take so long for deviations

    from MichaelisMenten kinetics to be reported and

    Athel Cornish-Bowden learned about MichaelisMenten kinetics when he was working for his DPhil at Oxford with Jer-

    emy Knowles, and his postdoctoral research in Dan Koshlands laboratory at Berkeley led to an interest in mechanisms

    of enzyme regulation. Subsequently, he spent 16 years in the Biochemistry Department at Birmingham, before moving

    to the CNRS in Marseilles in 1987, where he is now Directeur de Recherche Emerite. His principal research interests

    in recent years have been self-organization and the definition of life. He is the longest-serving member of the Editorial-

    Advisory Board of the FEBS Journal, which he joined in 1984.

    doi: 10.1111/febs.12695

    FEBS Journal 281 (2014) 433434 2013 FEBS 433

  • analysed? The explanation probably lies in the need to

    establish the norm before exceptions to it could be rec-

    ognized [5]: a century ago, extremely few enzymes had

    been characterized, even superficially, and almost noth-

    ing was known about their structures (this was in the

    heyday of colloids) or about metabolic pathways and

    how they might be regulated. The first paper on alloste-

    ric interactions [2] continues to be well cited, although

    perhaps overshadowed by the publication of models to

    account for them [6,7] that it stimulated. The relation-

    ship between these and other models is reviewed by

    Athel Cornish-Bowden. Right from the outset haemo-

    globin, as an honorary enzyme, was at the centre of

    many discussions of these models because it offered

    numerous advantages over any enzymes that had been

    characterized 50 years ago, and it has continued to be

    one of the most interesting and important examples of

    allosteric regulation, as described by Maurizio Brunori.

    Biochemistry has moved a long way from invertase

    kinetics, first to allosteric regulation and the whole

    development of metabolic regulation and control, and

    now to detailed three-dimensional structures of

    enzymes, details of their mechanisms of action, and,

    most recently, studies of single molecules. In this spe-

    cial issue of the FEBS Journal, we have attempted to

    provide a rounded picture of this development.

    References

    1 Michaelis L & Menten ML (1913) Kinetik der

    Invertinwirkung. Biochem Z 49, 333369.

    2 Monod J, Changeux JP & Jacob F (1963) Allosteric

    proteins and cellular control systems. J Mol Biol 6,

    306329.

    3 Johnson KA & Goody RS (2011) The original Michaelis

    constant: translation of the 1913 MichaelisMenten

    paper. Biochemistry 50, 82648269.

    4 Michaelis L & Menten ML (2013) The kinetics of

    invertin action (translated by T R C Boyde). FEBS Lett

    587, 27122720.

    5 Cardenas ML (2013) Michaelis and Menten and the long

    road to the discovery of cooperativity. FEBS Lett 587,

    27672771.

    6 Monod J, Wyman J & Changeux JP (1965) On the

    nature of allosteric transitions a plausible model.

    J Mol Biol 12, 88118.

    7 Koshland DE Jr, Nemethy G & Filmer D (1966)

    Comparison of experimental binding data and

    theoretical models in proteins containing subunits.

    Biochemistry 5, 365385.

    434 FEBS Journal 281 (2014) 433434 2013 FEBS

    MichaelisMenten kinetics and allosteric regulation A. Cornish-Bowden