Access to sequences: GenBank – a place to start and then some more... Links: embl nucleotide archive
EMBL ( European Molecular Biology Laboratory) Nucleotide Sequence Database.
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Transcript of EMBL ( European Molecular Biology Laboratory) Nucleotide Sequence Database.
Applications in SRS
SWISSPROT
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Sequence
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BLAST results- text file
BLAST
Indexing
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Prosite
Protein Applications in SRSHomology and similarity tools:
BLASTP : database search toolFASTA : database search toolMPSrch
Protein function analysis tools:PPSearh : BLASTProdomScanRegExpFingerPrintScanPfScanInterProScanMPSrch
• Sequence analysis tools: - ClustalW
Nucleotide applications in SRS
Homology and similarity toolsBLASTNNFASTAFASTXFASTY
Sequence analysis tools:NClustalWRestrictionMap
Integr8
• Permite identificar y descargar información genómica para especies que tengan el genoma completo.
• Integr8 : Biología, analisis genoma y proteoma• Los datos se integran a partir de diferentes
fuentes: EMBL Nucleotide Sequence Database (EMBL-Bank); Ensembl; the UniProt Knowledge base; InterPro; CluSTr; and the Gene Ontology Annotation database