EcoSystem Concept
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Transcript of EcoSystem Concept
ICES Data Centre
EcoSystemDataEcoSystemData
AAn integrated solution from data collection to data productn integrated solution from data collection to data product
Hans Mose Jensen ([email protected])Carlos Pinto ([email protected])
““The study of the The study of the physical conditionsphysical conditions, of the , of the chemical chemical nature of the ocean watersnature of the ocean waters, of the currents etc., is of , of the currents etc., is of
greatest importance for the investigation of the greatest importance for the investigation of the problems problems connected with lifeconnected with life… and consequently a … and consequently a sharp line sharp line
should never be drawn between these two main should never be drawn between these two main divisionsdivisions..” ”
ICES Report of Administration (RPV, ICES Report of Administration (RPV, 19031903))
ICES Data Centre
• For an holistic analysis of the data◦ Provide information to find underlying cause and effect
relationships across scientific topics
• Spending time on research and not in collecting and formatting the data◦ Avoid that scientists have to collect data from several
databases ◦ Aligned formats - distinct repositories of data have normally
distinct formats
• Timeliness for advice◦ Higher quality on the data due to improved cross checking
possibilities and generic data structures◦ Quick and flexible response to customers◦ Effective data processing
Why build EcoSystemData?
ICES Data Centre
Seawater Bottle CTD/underway CommunityBiota Sediment
File Measurement
User operations
Extract BrowseManage AnalyseVisualise
Raw data
EcoSystemData (Database)
Sample Spot
Date/Time Lat/Long
EcoSystemData (Web Application)
Manage BrowseWeb
ServicesQuery/visualise
ModelTable Chart Map
Inventory
ICES Data Centre
METADATA RELATIONS
Core tableMandatory records:E.g. Lat, Lon, Date
Type relationsE.g.
Type: Water depthValue: 90
Common Code- Type table
E.g. ITIS
Common Code Table
E.g. Gadus morhua
RECOERMS ITIS …Reference codes
ICES Data Centre
This part of the web site is restricted to ICES data managers. The functionality reflects what is necessary in order to run the system on a daily basis
MANAGE
• Inserting
• Updating
• Deleting
• Detecting duplicates
• Dealing with duplication(verify -> accept/delete)
ICES Data Centre
This area is intended for all users. Uploaded files can be browsed in the 3.2 format input file structure. For each uploaded data file, the information can be browsed down to parameter level
• Browse uploaded data files
• Browse data (grouped by record type)
• View map of stations
• Download file (3.2 format)
• Facilitate comparison with input data files
• Can guide when creating new data files
BROWSE
ICES Data Centre
• Select summary by area and time period
• Summary per data type
• Summary per parameter-group and parameter
INVENTORY
This area is intended for all users. It should be possible to easily get an overview of data in the system (data types, parameters, samples and measurements)
ICES Data Centre
All users should be able to specify a query for data from the system. The result of a query can be visualised on maps and charts or be downloaded as a table.
QUERY
• Customise a query
• Display result on map, chart or table
• Combine different data queries on the same map
•
ICES Data Centre
• Ecosystem data is now operational for data insertions
• ICES is being more responsive to data consumers
• Data processing and analysis is now easier and quicker
• One database, one interface, many applications
CONCLUSIONS
ICES Data Centre
• Visualise◦ Build queries and show the result as maps,
charts and tables to be downloaded
• Models◦ Apply models on data, for example as a support
tool for marine spatial planning or gridded data products
• Web Services◦ Set up web services enabling users to get
summaries, download datasets, etc
FUTURE DEVELOPMENT
ICES Data Centre
ICES Data Centre
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Station dictionary7-3-2008
ICES Data Centre
QA
Data submitter
Accessions
EcoSystemData
Data manager visual inspection
Error(s) found
DATSU screening
DATSU screeningError(s) found
Feedback/Assessment
DATSU
Error(s) found