EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel...
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Transcript of EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel...
EBI is an Outstation of the European Molecular Biology Laboratory.
DAS implementations
Bernat Gel
01/03/11
01/03/11DAS Implementations2
How do I DAS?
DAS enabled applications
DAS libraries
Clients Servers
ClientsServersJava, Perl Java, Perl, Javascript
01/03/11DAS Implementations3
Ensembl
http://www.ensembl.org/
01/03/11DAS Implementations4
Pfam
http://pfam.sanger.ac.uk/
Spice
01/03/11DAS Implementations5
http://www.dasregistry.org/spice/
01/03/11DAS Implementations6
Dasty
http://www.ebi.ac.uk/dasty/
01/03/11DAS Implementations7
Dalliance
http://www.biodalliance.org/
01/03/11DAS Implementations8
GBrowse
http://gmod.org/wiki/Gbrowse
And many more
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Jalview
IGB
The new EBI search
01/03/11DAS Implementations10
Data Sources?
01/03/11DAS Implementations11
DAS Servers
More than 750 DAS servers fom more than 50 organizations
Ensembl Uniprot
UCSC Many small groups
Most of them available at the DAS Registry
http://www.dasregistry.org
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BioMart
BioMarts are also DAS servers
http://www.biomart.org/
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What about MY data?
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easyDAS
http://www.ebi.ac.uk/panda-srv/easydas
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Libraries
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Clients
Bio::DAS::Lite
DASobert
JDAS
http://search.cpan.org/~rpettett/Bio-Das-Lite/
http://www.spice-3d.org/dasobert/index.jsp
http://code.google.com/p/jdas/
ttp://code.google.com/p/jsdas/jsDAS
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Servers
ProServer
MyDAS
Dazzle
http://sourceforge.net/projects/proserver/
http://code.google.com/p/mydas/
http://www.biojava.org/wiki/Dazzle
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Questions?