DU145

10
0 0.5 1 1.5 2 2.5 Scram ble siMM SET pool siM M SET C -ter H 3K 36m e2 H 3K 27m e3 0 0.2 0.4 0.6 0.8 1 1.2 1.4 Scramble siMMSET pool siMMSET C-ter H3K36me2 H3K27me3 0 0.2 0.4 0.6 0.8 1 1.2 1.4 1.6 Scramble siMMSET pool siMMSET C-ter H3K36me2 H3K27me3 DU145 RWPE-1 BPH1 A B Relative levels Relative levels Relative levels Figure S1 0 0.2 0.4 0.6 0.8 1 1.2 1.4 1.6 Scram ble siM M SET pool siMM SET C -ter H 3K 36m e2 H 3K 27m e3 0 1 2 3 4 5 6 7 Scram ble siM M SET pool siM MSET C -ter H 3K 36m e2 H 3K 27m e3 PC-3 22Rv1

description

Figure S1. A. 22Rv1. DU145. PC-3. Relative levels. B. RWPE-1. BPH1. Relative levels. Relative levels. Figure S2. A. RWPE-1. RWPE-1. % Methylated Species. % Methylated Species. B. DU145. DU145. % Methylated Species. % Methylated Species. Figure S3. A. RWPE-1. RWPE-1. - PowerPoint PPT Presentation

Transcript of DU145

Page 1: DU145

0

0.5

1

1.5

2

2.5

Scramble siMMSET pool

siMMSET C-ter

H3K36me2

H3K27me3

0

0.2

0.4

0.6

0.8

1

1.2

1.4

Scramble siMMSET pool siMMSET C-ter

H3K36me2

H3K27me3

0

0.2

0.4

0.6

0.8

1

1.2

1.4

1.6

Scramble siMMSET pool siMMSET C-ter

H3K36me2

H3K27me3

DU145

RWPE-1 BPH1

A

B

Re

lati

ve

le

ve

ls

Re

lati

ve

le

ve

ls

Re

lati

ve

le

ve

ls

Figure S1

00.20.40.60.8

11.21.41.6

Scramble siMMSET pool

siMMSET C-ter

H3K36me2

H3K27me3

0

1

2

3

4

5

6

7

Scramble siMMSET pool

siMMSET C-ter

H3K36me2

H3K27me3

PC-3 22Rv1

Page 2: DU145

0

10

20

30

40

50

60

70

H3K36me0 H3K36me1 H3K36me2 H3K36me3

Scramble

siMMSET pool

siMMSET C-ter

0

10

20

30

40

50

60

70

H3K27me0 H3K27me1 H3K27me2 H3K27me3

Scramble

siMMSET pool

siMMSET C-ter

0

10

20

30

40

50

60

70

H3K27me0 H3K27me1 H3K27me2 H3K27me3

Empty vector

MMSET

MMSET Y118A

0

10

20

30

40

50

60

70

80

90

H3K36me0 H3K36me1 H3K36me2 H3K36me3

Empty vector

MMSET

MMSET Y118A

% M

eth

yla

ted

Sp

ecie

sA

B

RWPE-1 RWPE-1

DU145 DU145

Figure S2

% M

eth

yla

ted

Sp

ecie

s%

Met

hy

late

d S

pec

ies

% M

eth

yla

ted

Sp

ecie

s

Page 3: DU145

0

5

10

15

20

25

30

35

40

45

H3K36me0 H3K36me1 H3K36me2 H3K36me3

Scramble

siMMSET pool

siMMSET C-ter

0

10

20

30

40

50

60

H3K27me0 H3K27me1 H3K27me2 H3K27me3

Scramble

siMMSET pool

siMMSET C-ter

0

5

10

15

20

25

30

35

40

45

50

H3K36me0 H3K36me1 H3K36me2 H3K36me3

Scramble

siMMSET pool

siMMSET C-ter

0

10

20

30

40

50

60

H3K27me0 H3K27me1 H3K27me2 H3K27me3

Scramble

siMMSET pool

siMMSET C-ter

% M

eth

yla

ted

Sp

ecie

sA

B

RWPE-1 RWPE-1

BPH1 BPH1

Figure S3

% M

eth

yla

ted

Sp

ecie

s

% M

eth

yla

ted

Sp

ecie

s

% M

eth

yla

ted

Sp

ecie

s

Page 4: DU145

0

10

20

30

40

50

60

70

Scramble siMMSET pool siMMSET c-ter

G1-G0

S phase

G2-M

0

10

20

30

40

50

60

70

Scramble siMMSET pool siMMSET c-ter

G1-G0

S phase

G2-M

0

1

2

3

4

5

6

7

8

9

1

Scramble

siMMSET pool

siMMSET c-ter%

An

ne

xin

V p

osi

tive

ce

lls

DU145 PC-3

% C

ells

% A

nn

exi

n V

po

sitiv

e c

ells

A

B

0

1

2

3

4

5

6

1

Scramble

siMMSET pool

siMMSET c-ter

DU145 PC-3

**

*

% C

ells

Figure S4

Page 5: DU145

0

1

2

3

4

5

0 24 48 72 96 120 144

Scramble

siMMSET pool

siMMSET C-ter

Scramble siMMSET pool siMMSET c-ter

A B C

D E

0

200

400

600

800

1000

1200

Scramble siMMSET pool

siMMSET c-ter

**

**

Co

lon

ies

/we

ll

** **

Re

lati

ve

gro

wth

Time (hours)

0

50

100

150

200

250

300

350

400

Scramble siMMSET pool

siMMSET c-ter

** ** Ce

lls

/fie

ld

0

50

100

150

200

250

300

Scramble siMMSET pool

siMMSET c-ter

** **

Ce

lls

/fie

ld

Figure S5

Page 6: DU145

00.20.40.60.8

11.21.41.61.8

1

Scramble

siMMSET pool

siMMSET c-ter

0

0.5

1

1.5

2

Scramble siMMSET pool

siMMSET c-ter

00.20.40.60.8

11.21.41.61.8

1

Scramble

siMMSET pool

siMMSET c-ter

Scramble siMMSET pool siMMSET c-terA

B C

γ-catenin E-cadherin

Vimentin

GAPDH

Scram

ble

MM

SET poo

l

siRNA: MM

SET c-te

r

Occludin

E-cadherin

0

0.4

0.8

1.2

1

Scramble

siMMSET pool

siMMSET c-ter

0

0.2

0.4

0.6

0.8

1

1.2

1

Scramble

siMMSET pool

siMMSET c-ter

0

0.2

0.4

0.6

0.8

1

1.2

1

Scramble

siMMSET pool

siMMSET c-ter

0

0.2

0.4

0.6

0.8

1

1.2

1

Scramble

siMMSET pool

siMMSET c-ter

Occludin

N-cadherinFibronectin 1Vimentin

Re

lati

ve

ex

pre

ss

ion

Re

lati

ve

ex

pre

ss

ion

***

**

****

*

*** *

Re

lativ

e E

-ca

dh

erin

p

rote

in

Figure S6

00.20.40.60.8

11.21.41.61.8

1

Scramble

siMMSET pool

siMMSET c-ter

Page 7: DU145

0

0.5

1

1.5

2

2.5

MMP2 MMP7 MMP9 Slug Snail Twist1 Twist2

Scramble

siMMSET pool

siMMSET c-ter

02468

101214161820

MMP2 MMP7 MMP9 Slug Snail Twist1 Twist2

Empty vector

MMSET

A

B

RWPE-1

DU145

Rel

ativ

e e

xpre

ssio

nR

elat

ive

exp

ress

ion

* **

***

***

****

Figure S7

Page 8: DU145

A

B p =0.005

Re

lati

ve

TWIST1

e

xp

res

sio

n

C

0

50

100

150

200

250

300

350

400

KMS11 KMS11MMSET KD

KMS11-TKO KMS11-TKO+MMSET

Re

lati

ve

Ge

ne

Ex

pre

ss

ion

Re

lati

ve

TWIST1

e

xp

res

sio

n

0

50000

100000

150000

200000

250000

300000

350000

400000

450000t(4;14)+ t(4;14)-

050

100

150

200

250

300

350

400

Figure S8

Rel

ati

ve TWIST1

exp

ress

ion

Page 9: DU145

Occludin

Vimentin

E-cadherin

GAPDH

siRNA: Scr Twist#2

Twist#1

A

B C

0

50

100

150

200

250

Scramble siTwist1 #1

siTwist1 #2

** ** Ce

lls

/fie

ld

Figure S9

D

0

50

100

150

200

250

300

350

Scramble siTwist1 #1

siTwist1 #2

** ** C

ell

s/f

ield

siTwist1 #1 siTwist1 #2Scramble

Page 10: DU145

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

Upstream Exon 3

Scramble

siMMSET pool

siMMSET c-ter

0

0.05

0.1

0.15

0.2

0.25

Upstream Exon 3

Scramble

siMMSET pool

siMMSET c-ter

0

0.05

0.1

0.15

0.2

0.25

0.3

0.35

Upstream Exon 3

Empty vector

MMSET

0

0.05

0.1

0.15

0.2

0.25

0.3

0.35

Upstream Exon 3

Empty vector

MMSET

AMMSET H3K36me2

BMMSET H3K36me2

% E

nric

hmen

t%

Enr

ichm

ent

% E

nric

hmen

t%

Enr

ichm

ent

Figure S10

**

**

***

** **

*