Developing Drugs? Take a Powder! - Bruker · Welcome Today’s Topics Use of powder X-ray...
Transcript of Developing Drugs? Take a Powder! - Bruker · Welcome Today’s Topics Use of powder X-ray...
Welcome
Today’s TopicsUse of powder X-ray Diffraction (XRD) in various stages of the drug development chainDifferences between X-ray and other analytical methods to help you make informed decisions about the best approach for analysis andprocess control
Speakers
Uwe PreckwinkelMarketing & Sales Manager, XRDMadison, WI
Holger CordesSenior Applications Scientist, XRDMadison, WI
Applications of XRD in the Pharmaceutical Industry
Synthesis of new materialsSolid-state characterisation
• Crystallinity• Thermal behaviour• Hygroscopical behaviour• Grindability / compressability• Polymorphism• Bioavailability
Scale-upQuality control assayFailure AnalysisPatentingCounterfeiting
XRD Applications for Pharmaceutical Samples
XRD & XRD2 Single Crystal
Several Grains Powder Finished
Product Solutions
Qualitative Phase ID
Grain size determination ( )
( )
Quantitative Rietveld analysisQuantitative analysis with standards
Shape analysisHigh-throughput screening
X-ray movie, non-AmbientStructure solution, indexing
Microdiffraction, mapping
% Crystallinity ( )
Powder X-ray Diffraction Basics
Diffraction of an ideal powder
Diffraction of a small numberof crystallites ("spotiness effect")
Diffraction of textured materials
31.01.2008Bruker Confidential6
X-ray Diffraction Systems for Powders
D8 ADVANCE: modular, expandable
D4 ENDEAVOR: compact system, high throughput
Detector Options for XRD Systems
Point detectors • Scintillation
detector• Sol-x detector
Position-sensitive detectors (PSD)• VÅNTEC-1• LynxEye
Area detectors• GADDS-HISTAR• VÅNTEC 2000
Commonly used for routine analysis with Bragg-Brentano geometry
For microdiffraction, polymorph screening, non-ideal powders with poor statistics
High speed analysis, quality control
Please use your mouse to answer the question on the right of your screen:
What process analytical techniques are you currently using for the analysis of your materials? (Check all that apply):
Chromatography (HPLC)Thermal Analysis (DSC)Infrared spectroscopyRaman SpectroscopyMass SpectroscopyPowder X-ray Diffraction Single Crystal X-ray DiffractionParticle size analysisOther
Audience Poll
Small Sample Analysis: Gabapentinin Bragg-Brentano Geometry
Several mg of sample dusted on silicon low-background holder
• VÅNTEC-1 detector
• Measurement range: 3-50°
• Total measurement time: 1:43 min!
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Small Sample Analysis: Low-angle Msmtswith Position-sensitive Detectors
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Ibuprofen powder with air scatter screen
Ibuprofen scan without air scatter screen
Small Sample Analysis: VÅNTEC-1 Performance
VÅNTEC-1 at low angles with air scatter screen
• Ibuprofen
• 0.3° fixed-divergence slits, 2.5° soller slits on both sides
• 0.015° step size, 0.1 sec/step, 4-min scan from 3 to 40 deg
• Scan on low-background holder without sample
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Small Sample Analysis: Ibuprofen Sample in Capillary
60 mm Goebel mirror
Capillary stage
Radial Soller slit
Step size 0.02°
Time per step 0.1 sec
0.7 mm glass capillary
Measurement time: less than 4 minutes
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32-1723 (*) - Ibuprofen - C13H18O2
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Small Sample Analysis: Microdiffraction with VÅNTEC-1 detector, Ibuprofen
All measurements with 0.1 sec/step and step size 0.023°Measurement time: 2.5 min 40 mm Goebel mirror, 1 mm exit slit, no collimator (unscaled)40 mm Goebel mirror + 1 mm collimator (scaled with factor 15)40 mm Goebel mirror + 0.5 mm collimator (scaled with factor 80)
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Small Sample Analysis: Detection Limit
~3 ng* of silicon powder adhered to a 0.1 mm loop
Powder pattern of Si to 70o 2θ
* Estimated by quantitative analysis of x-ray diffraction patterns of silicon powder [~ 5.8 cps/μg (111) reflection]
27-1402 (*) - Silicon, syn - Si - Y: 50.00 % - d x by: 1. - WL: 1.54056 - Cubic - I/Ic PDF 4.7 - Operations: Import? Frame: c:\bhuv\Si\Si2\micro_Frame: c:\bhuv\Si\Si2\micro_2_01.001 - File: si_micro_less.raw - Type: 2Th alone - Start: 7.000 ° - End: 70.000 ° - Step: 0.050 ° - Step time: 10035.8 s - Temp.: 25
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High-throughput Screening (HTS)
Multiple Samples Library Analysis
Screening Properties
Screening Results
High-throughput Screening (HTS)
D8 DISCOVER powder diffractometer with 2D detector and XYZ sample handling
Reflection mode (CS)
Transmissionmode (CST)
IμS & VÅNTEC-2000 vs. Classic Setup:Corrundum Comparison
Single 40 mm Goebel mirror,
45 kV, 40 mA,
0.3 mm snout
Total counts: 78K
IμS & VÅNTEC-2000
45 kV, 0.650 mA,
0.3 mm snout
Total counts: 1235K
Operations: Import1)Corundum06192007_newsource - File: Corundum06192007_newT_01.raw - Type: 2Th alone - Start: 22.000 ° - End: 55.200 ° - Step: 0.020 ° - Step time: 100. s - Temp.: Operations: Import1)corundum6282007 - File: corundum6282007_05.raw - Type: 2Th alone - Start: 22.000 ° - End: 55.200 ° - Step: 0.020 ° - Step time: 100. s - Temp.: 25 °C (Room) - Time S
Corundum06192007_newsource - Obs. Max: 35.150 ° - Max Int.: 21.1 Cps - FWHM: 0.187 °
corundum6282007 - Obs. Max: 35.144 ° - Max Int.: 1.25 Cps - FWHM: 0.189 °
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Black: Sealed Tube
Red: IμS & VÅNTEC-2000
Observation - (104) reflection
Comparison After Data Integration
Black: Max Int: 1.25 cps
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Red: Max Int: 21.1 cps
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Comparison of Intensities
Single 40 mm Goebel mirror, 45 kV, 40 mA,0.3 mm snoutTotal counts: 607
IμS & VÅNTEC-200045 kV, 0.650 mA,0.3 mm snout Total counts: 1942
IμS & VÅNTEC-2000 vs. Classic Setup: Millisecond Snapshot
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The Five Fingers of Quartz
D8 DISCOVER GADDS with IμS and VÅNTEC-2000
Ibuprofen, Measured in Transmission with Sealed Tube
Sample to detector: 29 cm0.3 mm collimatorVÅNTEC-2000 detectorMeasurement time: 120 sec
Gabapentin, Measured in Transmission with Sealed Tube
Sample to detector: 29 cm0.3 mm collimatorVÅNTEC-2000 detector120 sec collection time
High-resolution Screening System with Vαrio1 and VÅNTEC-1 detector D8 ADVANCE HTS
High throughput and high resolution for transmission samples
Application: VÅNTEC-1 Detector with Vαrio1in Transmission
00-015-0985 (*) - Citric acid hydrate - C6H8O7·H2O00-016-1157 (*) - Citric acid - C6H8O7File: 3mg Citric acid H2O transmission vario 6mm exit slit vantec slits 8-12 0.085_0.2sec.raw
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00-015-0985 (*) - Citric acid hydrate - C6H8O7·H2O00-016-1157 (*) - Citric acid - C6H8O7File: 3mg Citric acid H2O transmission vario 6mm exit slit vantec slits 8-12 0.085_0.2sec.raw
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Sample: 3 mg Citric Acid Hydrate between Prolene foils
Polymorph Screening
Very powerful tool for QC: the ability to make sure that the drug substance you want to be in the final product is actually the one that is being produced in manufacturingInfluencing factors• Changes in temperature• Changes pressure• Changes in raw materials• Stirring rate• etc.
Technique can also be used to verify that the correct excipients are in the final product, as well as the drug substance
Polymorph Screening – Searching Against a Defined Database
The manual method allows for direct comparison but it is subjective• The user must use their objectivity to make the comparison
The other drawback of the manual method is the fact that you do not have an unequivocal comparison of what the materials present are. In other words you say it is the same or not, but if it is not the same then you are left guessing as to the difference.This is the advantage of the screening method when comparing against a databaseNot only can you say it is the same….you can also identify materials that do not belong
Polymorph Screening – Searching Against a Defined Database
Here is an XRD pattern from a drug sample.We have set up a database of all of the drug substances and excipients that could be present for this type of sample.This particular sample should be only the pure drug polymorph. There should be nothing else in the material.So we search the database to determine if this is the case.
Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (
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Polymorph Screening – Searching Against a Defined Database
After searching the database, the software has found that indeed the polymorph drug substance is present and is Acetaminophen.However there are other peaks in the pattern that the database pattern of Acetaminophen does not account for.Conclusion: There are other materials in the pattern. At a cursory glance, this material can be rejected, but for the purpose of troubleshooting we need to know what the contamination is.
00-039-1503 (*) - Acetaminophen paracetamol - C8H9NO2 - Y: 33.33 % - d x by: 1. - WL: 1.5406 - 0 - Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (
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Polymorph Screening – Searching Against a Defined Database
We then search the database for the remaining peaks.The software now reports that the remaining peaks are from the material Sucrose.We now know the material is contaminated and what it is contaminated with.
00-024-1977 (*) - Sucrose - C12H22O11 - Y: 79.17 % - d x by: 1. - WL: 1.5406 - 0 - I/Ic PDF 0.7 - S-Q 100.0 % - Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (
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Polymorph Screening – Searching Against a Defined Database
00-024-1977 (*) - Sucrose - C12H22O11 - Y: 79.17 % - d x by: 1. - WL: 1.5406 - 0 - I/Ic PDF 0.7 - 00-039-1503 (*) - Acetaminophen paracetamol - C8H9NO2 - Y: 33.33 % - d x by: 1. - WL: 1.5406 - 0 - Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (
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AcetaminophenSucrose
Polymorph Screening – Searching Against a Defined Database
Searching against a defined database is a very powerful tool forpolymorph screening.Not only can you tell if a sample meets specifications, you can also determine the materials, or lack of materials, that caused the sample to fail.However, the ideal polymorph screen would be to provide the information to a manual search and a database search all in one with no user interaction.This is called pattern recognition and is available in PolySNAP software.
PolySNAP – Pattern Matching
Full profile analysis:
PolySNAP pattern matching is based on a statistical comparison of each measured data point in each pattern.This true, full pattern analysis approach takes advantage of allpattern information, including presence or absence of peaks, peak shoulders, and background regions.PolySNAP provides an easy-to-use interface to several powerful and novel statistical methods to rank patterns in order of theirsimilarity to any selected sample, allowing known as well as unknowns to be identified quickly.
Every data point in every pattern is used to compare samples!
PolySNAP – Auto-detection of Different Samples
Automatic phase ID of knownsIdentical colors = identical samples
PolySNAP – Auto-detection of Different Samples
Automatic phase ID of knownsIdentical colors = identical samples
PolySNAP – Auto-detection of Unknown or Unexpected Phases or Samples
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
PolySNAP – Auto-detection of Unknown or Unexpected Phases or Samples
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
PolySNAP – Auto-detection of Mixtures
Automatic detection of unknownor unexpected phases or patterns
Automatic phase ID of knownsIdentical colors: identical samplesDifferent colors: different samples
PolySNAP – Auto-detection of Mixtures
Automatic detection of unknownor unexpected phases or patterns
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
Form B Form C
Form B+C
PolySNAP – Auto-detection of Amorphous Phases
Automatic detection andquantification of mixtures
Form B Form C
Form B+C Automatic detection of unknownor unexpected phases or patterns
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
PolySNAP – Auto-detection of Amorphous Phases
Automatic detection andquantification of mixtures
Form B Form C
Form B+C Automatic detection of unknownor unexpected phases or patterns
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
PolySNAP – Full Pattern Analysis
Automatic detection ofamorphous phases
Automatic detection andquantification of mixtures
Form B Form C
Form B+C Automatic detection of unknownor unexpected phases or patterns
Automatic phase ID of knownsIdentical colors = identical samplesDifferent colors = different samples
PolySnap Visualization Options –6-dimensional Plots
Display of crystallization parameters as - symbol size- symbol shape - symbol color
Video image of sample well
Selected sample pattern
Sample crystallization conditions
No sample reloading between XRD and Raman measurementsPILOT software that controls XRD and Raman measurementsPolySNAP software for combined full pattern matching of XRD and Raman patternsAnalysis of amorphous phases using Raman spectroscopy
D8 SCREENLAB – Combined XRD and Raman Spectroscopy
Methodology – PXRD + Raman
Full profile matching
All patterns against all patterns
nXRPD
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matrix
Full profile matching
All patterns against all patterns
nRaman Patterns
nxnCorrelation
matrix
nxnDistance matrix
Combine
XRD results
Ramanresults
Combined results
nxnDistance matrix
nxnDistance matrix
Combined Datasets – Example 1
48 patterns of 3 forms of Sulfathiazol (forms 2, 3 and 4)PXRD and Raman data collectedPXRD Data only: splits Form 3 into two separate clusters
Form 4 Form 3 Form 2 Form 3
Combined Datasets – Example 1
48 patterns of 3 forms of Sulfathiazol (forms 2, 3 and 4)PXRD and Raman data collectedRaman data only: doesn’t distinguish between Form 3 and Form 4
Forms 3 & 4 Form 2
Combined Datasets – Example 1
48 patterns of 3 forms of Sulfathiazol (forms 2, 3 and 4)PXRD and Raman data collectedCombined PXRD + Raman using Automatic Weights: does much better than the individual methods alone
Form 4 Form 2Form 3
Combined Results – Example 2
46 patterns of 2 anhydrous forms of Carbamazepeine (Forms 1 & 3)PXRD and Raman data collectedPXRD data only: E3 and F7 in different clusters
Combined Results – Example 2
46 patterns of 2 anhydrous forms of Carbamazepeine (Forms 1 & 3)PXRD and Raman data collectedRaman data only: E3 and F7 in same cluster!
Combined Results – Example 2
46 patterns of 2 anhydrous forms of Carbamazepeine (Forms 1 & 3)PXRD and Raman data collectedPXRD & Raman data combined: F7 highlighted as an outlier due to this inconsistency
Other outliers (yellow) are mixtures of the 2 forms
Combined Results
Matching method does very well in distinguishing forms automatically using either Raman or PXRD dataCombined results using Automatic Weights seem to be better than either PXRD or Raman aloneIdentification of pure phases / mixtures improvedUse of combined data highlights any inconsistencies in separate analyses• Such inconsistencies would not be obvious with only one data source• User can then examine outliers manually in detail
Seeing similar clustering from multiple original data sources increases confidence in the results
Quality Control
Given a set of reference patterns, new patterns can be considered to be similar enough to the references to ‘pass,’ or different enough to ‘fail.’Graphical representation:
new samples within the green Pass surface are OK, samples falling outside the surface fail.
Quantitative Analysis
We have now seen many different ways to screen samples to make sure we have made what we want to make.
The next question that needs to be asked is… Am I making these materials in the correct amounts?This can be answered with quite a few different methods
• Reference intensity ratio• Full pattern scaling• Standard-based quantification• Quantitative Rietveld Analysis
Please use your mouse to answer the question on the right of your screen:
Which method do you prefer for quantitative phase analysis?
Conventional standard-based quantificationReference-intensity ratioFull pattern scaling based on reference scans of pure phasesStandardless Rietveld Analysis (because of peak overlap or because standards are not available)
Audience Poll
00-024-1977 (*) - Sucrose - C12H22O11 - Y: 8.40 % - d x by: 1. - WL: 1.5406 - Monoclinic - I/Ic PDF 0.7 - S-Q 2.8 % - 00-039-1503 (*) - Acetaminophen paracetamol - C8H9NO2 - Y: 41.66 % - d x by: 1. - WL: 1.5406 - Monoclinic - I/Ic User 0.1 - S-Q 97.2 % - Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (Room) -
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Quantitative Analysis – Scaling Method
This method takes the information from the database and, using the scaling factors that can be applied to the patterns, quantitative information can be obtained.The user simply has to scale the intensity of the database pattern to the intensity of the unknown.This pattern is a zoom region of the Sucrose, Acetaminophen sample.The scale factors here are obviously wrong.
AcetaminophenSucrose
Quantitative Analysis – Scaling Method
However the user can simply scale these patterns with the mouse and obtain the correct match to the unknown samples.Once the data are properly scaled, the software will automatically report the correct concentrations.
00-024-1977 (*) - Sucrose - C12H22O11 - Y: 67.19 % - d x by: 1. - WL: 1.5406 - Monoclinic - I/Ic PDF 0.7 - S-Q 31.5 % - 00-039-1503 (*) - Acetaminophen paracetamol - C8H9NO2 - Y: 20.83 % - d x by: 1. - WL: 1.5406 - Monoclinic - I/Ic User 0.1 - S-Q 68.5 % - Operations: Range Op. Merge | Import [003]sugar [003] - File: Front loaded sugar 0.5 div 0.2 det slit sol-x [003].raw - Type: 2Th/Th locked - Start: 2.000 ° - End: 89.980 ° - Step: 0.017 ° - Step time: 6005. s - Temp.: 25 °C (Room) -
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AcetaminophenSucrose
Material %
Acetaminophen 2.8%
Sucrose 97.2%
Quantitative Analysis: Lower Detection Limits with Faster Detectors
Example: Ibuprofen with known amount of impurity
• Measurement circle: 500 mm
• VÅNTEC-1 detector• 40 kV, 40 mA• Step size: 0.015°• Step time: 1° sec/step
0.08 wt% of known impurity was added
Actual detection limits depend on:
• Crystallinity• Peak overlap• Crystal symmetry• Preferred orientation• Crystallite statistics
00-032-1723 (*) - Ibuprofen - C13H18O2
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Standard-based Quantitative Analysis: Powder Samples, Comparison
For quantification based on single peak areas, the peak at approx. 22.1° can be used to best distinguish Form B from Form A, because there is no overlap
Operations: ImportPolyB ground lynxeye 0.5dg div 2.5 dg soller - Step: 0.020 °Operations: Import90089 poly a ground 3 0.5div 500mm LynEye2.5 dg - Step: 0.019 °
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Polymorph APolymorph B
Standard-based Quantitative Analysis: Quantification of Polymorph B with DQuant
The peak area (highlighted green) was used to quantify Polymorph B.The yellow areas are background areas. This also works for the degree of crystallinity quantification of partially amorphous samples.
Standard-based Quantitative Analysis: Calibration Curve
Consistent sample preparation with identical sample volumes is necessary to get sufficient accuracy
Failure Analysis: Quality Control on Tablets
Higher background of tablet scans caused by excipients.LynxEye detector:
• 0.5° divergence slit
• 4° soller slits• 0.019°/step• 1 sec/step• Measurement
time: 10 minutes from 18 to 25°
Measurement on small tablet with 50 mg API without sample preparation
Pure Polymorph APure Polymorph BTablet with 50 mg API: Polymorph B presentTablet with 50 mg API: no Polymorph B
Quantitative Analysis: Basic Principle of the Rietveld Method
The Rietveld method is a full-profile approach to quantitative phase analysis using powder diffraction data.The Rietveld method generates a calculated diffraction pattern that is compared with the observed data.Least-squares procedures are used to minimize the difference between the complete observed and calculated diffraction patterns. The following parameters is simultaneously refined:
• the structural parameters of each phase (lattice parameters, atomic coordinates, site occupancies). These are normally obtained from a data base or the literature
• the various experimental parameters affecting the pattern (displacement correction, peak shape, background, etc.)
The Rietveld method is standard-less.The Rietveld refinement method can be used to characterize several phases simultaneously. The relative masses of all phases contributing to the diffraction pattern can be derived from the refinement.
Quantitative Analysis of Test-Mixture: Rietveld Analysis using TOPAS
13.2 wt% beta-d-Mannitol was added to Ibuprofen as a test mixture Both crystal structures are known and available in databasesThere is considerable peak overlap between the two phases and preferred orientation for Ibuprofen
Quantitative Analysis of Test-Mixture: Rietveld Analysis using TOPAS
Individual calculated curves are highlightedThe full pattern can be used for quantitative analysis despite considerable peak overlap
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Percent Crystallinity
Another critical piece of information that is important to the pharmaceutical community is how crystalline is a sampleXRD is an excellent tool for determining this parameterCrystalline peaks are very sharp and definedAmorphous or non-crystalline peaks are very broadBy simply dividing the areas under each of the peaks the percent crystallinity can be easily obtainedOperations: Y Scale Mul 0.083 | Import
QUARTZ - File: Quartz.raw - Type: 2Th/Th locked - Start: 18.000 ° - End: 90.000 ° - Step: 0.020 ° - Step time: 10. s - Temp.: 25 °C (Room) - Time Started: 0 s - 2-Theta: 18.000 ° - Theta: Operations: Bezier Background 4.571,1.000 | ImportPOLYMER DATA Converted from UXD format byConverted from UXD format by XCH Version 1 FFT Smoothed - File: Poly.raw - Type: 2Th alone - Start: 8.600 ° - End: 58.360
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Percent Crystallinity
When both amorphous and crystalline phases are present in the same material you will get a pattern that is a combination of bothA large amorphous region with a crystalline region overlaid on topAgain by obtaining the area under the curves and simply dividing the percent crystallinity can be obtained
Operations: Bezier Background 5.623,1.000 | ImportPOLYMER DATA Converted from UXD format byConverted from UXD format by XCH Version 1 FFT Smoothed - File: Poly.raw - Type: 2Th alone - Start: 8.600 ° - End: 58.360Operations: ImportPOLYMER DATA Converted from UXD format byConverted from UXD format by XCH Version 1 FFT Smoothed - File: Poly.raw - Type: 2Th alone - Start: 8.600 ° - End: 58.360
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Percent Crystallinity
The easiest way to accomplish this is to have the user subtract the amorphous portion of the pattern and have the software calculate the area under the curvesThe software then tells us that this sample is 25% crystalline and 75% amorphousThe only issue with this technique is again the user intervention that needs to occur
Operations: Background 5.623,0.000 | ImportPOLYMER DATA Converted from UXD format byConverted from UXD format by XCH Version 1 FFT Smoothed - File: Poly.raw - Type: 2Th alone - Start: 8.600 ° - End: 58.360Operations: ImportPOLYMER DATA Converted from UXD format byConverted from UXD format by XCH Version 1 FFT Smoothed - File: Poly.raw - Type: 2Th alone - Start: 8.600 ° - End: 58.360
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Percent Crystallinity
The best way to accomplish this is by mathematically fitting the unknown pattern and then allowing the software to automatically calculate the areas and thus the crystallinityThis can also be completely automated to the point that all the user has to do is put the ample in the instrument and walk away
Structure Determination fromPowder Data
Intensity Extraction• LeBail, Pawley
Structure DeterminationStructure Refinement
"Profiling"• LeBail, Pawley
Structure Determination AND Refinementfrom yi(obs)
Peak Finding (FPA)Indexing, Space Group Determination
TOPAS ApproachCoelho (2000)
D8 ADVANCE Vαrio1 Monochromator for Transmission and Reflection
Johansson-type monochromator for pure Kα1 radiation
Six pre-defined geometries for reflection and capillary transmission measurements
Geometry change by moving the Vαrio1 along the track
Indexing of Ibuprofen with TOPAS
seed index_zero_errorBravais_Cubic_sgs Bravais_Trigonal_Hexagonal_sgs Bravais_Tetragonal_sgs Bravais_Orthorhombic_sgs Unique_Monoclinic_sgsBravais_Triclinic_sgs load index_d {14.51938 good7.2446436.9220056.3327196.0032815.3335145.297815.2665625.0090334.822784.726984.6511164.5425444.3922064.1112154.0536233.9746923.8974493.8060733.6920023.6663443.620241}
Get the first 20 d-spacings by profile fitting for input file
Indexing of Ibuprofen
Output after approx. 150 sec calculation time
Figure of merit versus cell volume
Space Group Un-indexed peaks GOF Zero error Lattice parameters
Ibuprofen: Comparison with ICDD Database
Note the missing lines in ICDD fileWith those lines not being resolved or detected, indexing from powder data becomes more difficult
Pure Kα1 radiation really does help for indexing
00-032-1723 (*) - Ibuprofen - C13H18O2
Lin
(Cou
nts)
0
10000
20000
2-Theta - Scale11 12 13 14 15 16 17 18 19 20 21 22
Structure Determination
TOPAS software for powder crystallographyIndexingStructure solutionStructure refinement
Caffeine AnhydrousV = 4453.7 Å3C8H10N4O25 molecules (rigid
bodies) in the asymmetric unit
70 non-hydrogen atoms in asymmetric unit
Environmental Stages: Humidity Stage
D8 ADVANCE powder diffractometer with integratedHot-Humidity System
Lactose Monohydrate: Dehydration and Hydration in MRI Humidity Stage
LynxEye detector:• 0.5° divergence
slit• 0.019°/step • 0.1 sec/step
00-027-1947 (I) - Lactose hydrate - C12H22O11·H2OY + 40.0 mm - File: lactose monohydrate after rehydration at 40C 76pc hum.rawY + 20.0 mm - File: lactose monohydrate at 45C_after heating 0.5dg div Lynxeye1.5dg.rawFile: lactose monohydrate at RT_0.5dg div Lynxeye1.5dg.raw
Lin
(Cou
nts)
0
10000
20000
30000
2-Theta - Scale10 20
Room temperature sample as receivedDehydrated at 160°C and cooled to 45°CRehydrated at 40°C and 76% relative humidity
Temperature Study with VÅNTEC-1 Detector in Snapshot Mode
140 fixed scans with a 10° 2theta angular coverageThe sample was heated to 170°C and slow-cooledMeasurement time for each snapshot: 2 secThe measurement was performed in air using a Pt strip heaterHeating rate and cooling rate: 0.2°/secCursor at 169°C
Sample: beta d-Mannitol
Temperature Study with VÅNTEC-1 Detector in Snapshot Mode, Level Plot
Alpha D-Mannitol+ Beta D-Mannitol
Beta D-Mannitol
heat
ing
cool
ing
Sample: beta d-Mannitol
21CFR Part 11 is Good for You...
Benefits of being compliant are numerous for areas where the FDAis currently not asking for records, or maybe never will:• It is easier and cheaper to buy new equipment with Part 11 in
mind now, than to deal with unnecessary risk assessments and future Part 11 remediation
• Exact records support any patent filing or later patent disputes• Electronic records have less space requirements and can be
more easily retrieved• Dividing line between the discovery and development stages
are not clear cut, and drug candidates often cycle between the two stages
Meeting Quality System Regulationsat Bruker AXS
Bruker AXS quality system:Hardware and software are being developed by applying a formal design process and product development life cycle according to Bruker AXS's ISO9001 certified product development proceduresFor software, additional written standards exist, such as codingstandards, configuration management, programmer qualifications, software version control, maintenance, formal testing of software/hardware, incident reporting and tracking, and disasterrecovery (Bruker AXS SW404)
Meeting Quality System Regulationsat Bruker AXS
External system testing(holistic testing at the customer site)
Bruker AXS IQ/OQ/PQ Procedure for regulated industriesBruker AXS Instrument Verification Procedure for all other customers*
* System acceptance test required by Bruker AXS (subset of the Bruker AXS IQ/OQ/PQ Procedure)
Internal system testing(component-based testing in the test field)
Test procedure for internal IQ/OQ/PQ before shippingincluding aFinal holistic test using the Bruker AXS Instrument Verification Procedure
IQ
OQ
PQ
Meeting Quality System Regulationsat Bruker AXS
21 CFR Part 11To integrate into an FDA 21 CFR Part 11 (or OECD) compliant laboratory, DIFFRACplus BASIC offers several tools to provide and guarantee authenticity, integrity and confidentiality of electronic records and electronic signatures, including:• Secure system log-ins• Automatic audit trail generation• Electronic signatures with reports and data• Network security with Windows NT4 / 2000• Tamper-proof data files with the ability to discern invalid or
altered recordsWhite Paper
DIFFRACplus BASIC: Meeting the Requirements of the FDA’s “21CFR Part11” Regulation
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