David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction...

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David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources

Transcript of David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction...

Page 1: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

David C. Chang, PhD, MPH, MBADirector of Outcomes ResearchUCSD Department of Surgery

Introduction to Outcomes Research Methods and Data Resources

Page 2: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.
Page 3: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Surgery and public health

Page 4: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Problem in surgical clinical research

•Unregulated

•FDA regulation applies only to “devices” (whether a real device, or a molecular device in the form of a drug)

•Procedural medicine are not regulated

• Many reasons: complexity, difficulty in standardizing, difficulty of enforcement (“surgeons know best” attitude)

•Self-regulation

Page 5: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Erroneous literature

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RCTs often too late

“Tipping Point”

EVAR-1, DREAM OVER

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Social responsibility

•It is our responsibility in academic medicine, to shoulder the responsibility that, in other fields of medicine, has been assumed by the FDA

•To ensure that only good treatment modalities are applied to patients

Page 8: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Biggest barrier to good research?

•Not having a correctly constructed hypothesis

•Incorrect design

•Don’t know how to get data

•Fear of statistics

Page 9: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Typical questions

•Components

• What/why/when/how• Verb• Condition

•“Why is the sky blue?”

•“What is the typical presentation of appendicitis?”

•Open-ended

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Open-ended questions

•Descriptive analysis

•Observational study = no comparison = no statistical test

•Only one denominator

• May have more than one numerator, generating more than one ratio

• All ratios are calculated with the same denominator

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43%

57%

Descriptive statistics

P value not applicable to compare different parts of the same population

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Value and pitfall

•To explore the unknown

• When you know nothing, the first step is to explore and document the numbers

•Risk of over-generalizing

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45%

55%

43%

57%

Inferential statistics

P value applicable for comparing parts of two populations

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What is a hypothesis?

•Question ≠ hypothesis

•Questions: usually open-ended

•Hypothesis: usually is closed-ended, asking for a yes/no answer

• Statistical testing can only give yes/no answers

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The process – study design

Study design phase Data preparation Analysis phase

Question development Select database Univariate

Define population Link database Bivariate

Define subset Select data elements Multivariable

Define outcome Generate new data elements Sensitivity

Define primary comparison Subset analysis

Define covariates

Page 17: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Steps in constructing a hypothesis

•Specify the outcomes (O in PICO)

• Common oversight: Often focus on the P, but vague about O (a typical question, “What is the outcome (?) of xyz patients?”)

•Specify the comparisons (C in PICO)

• Not done in open-ended questions

•Specify covariates (control variables, adjustment)

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Hypothesis statement

•y = b1X1 + b2X2 + b3X3

•Death = age + race + gender + insurance…

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Inclusion/exclusion criteria

•Just like a clinical trials (“eligibility criteria”)

•Diagnosis and/or procedure codes?

•Common mistake

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45%

55%

43%

57%

Comparison

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Outcome

•Mortality?

• Rare

•Complications

•Length of stay

•Charges

•Be judicious

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Covariates / independent variables

•Patient demographcis

•Patient comorbidity

•Surgeon volume

•Hospital volume

•Hospital type (teaching vs non-teaching)

•Area (rural vs urban)

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Hierarchy of influence on surgical outcomes

Technique and Management

Patient

Surgeon

Hospital

Region

Nation

Outcomes research

Clinical trials

Page 24: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

The process – data preparation

Study design phase Data preparation Analysis phase

Question development Select database Univariate

Define population Link database Bivariate

Define subset Select data elements Multivariable

Define outcome Generate new data elements Sensitivity

Define primary comparison Subset analysis

Define covariates

Page 25: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Overview of public and semi-public databases

Multi-specialty

•Administrative Databases

• Nationwide Inpatient Sample (NIS)

• Medicare, Medicaid• California OSHPD

•Clinical Databases

• National Surgical Quality Improvement Program (NSQIP)

Specialty-specific

•Trauma

• National Trauma Databank (NTDB) •O

ncology• Surveillance, Epidemiology, and

End Results (SEER)• National Cancer Databank (NCDB)

•Transplant

• United Network for Organ Sharing (UNOS)

Page 26: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Administrative databases

Advantages

•Large patient numbers

•Less selection bias

•Can be linked to other databases containing other non-medical information

Disadvantages

•Limited clinical course information

•Limited surgical procedure information

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NSQIP/non-NSQIP in-hospital mortality

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Select data elements

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Generate new data elements

•Most time consuming step of outcomes analysis

•Not every component of your research question is readily available in the database

• For example, comorbidity• Charlson Index, Elixhauser Index

•Some common concepts actually undefined

• Readmission?

Page 31: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

What is a “re-admission”?

•Not all “admissions” are “re-admissions”

•30-day?

•Elective?

•Transfers?

•Diagnosis-specific?

•Preventable?

Page 32: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

The process – analysis

Study design phase Data preparation Analysis phase

Question development Select database Univariate

Define population Link database Bivariate

Define subset Select data elements Multivariable

Define outcome Generate new data elements Sensitivity

Define primary comparison Subset analysis

Define covariates

Page 33: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Hypothesis statement

•y = b1X1 + b2X2 + b3X3

•Death = age + race + gender + insurance…

Page 34: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Table 1: Descriptive analysis

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Table 2: Bi-variate analysis(unadjusted comparison)

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Table 3: Multivariable analysis(adjusted analysis)

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Analysis for Table 1

Page 38: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

43%

57%

Analysis for Table 1

P value not applicable to compare different parts of the same population

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Analysis for Table 1

•% for categorical data

•Mean/median/SD for continuous data

•For exploratory studies, descriptive studies, case series, etc., this would be the end of the process

•Reminder, avoid overgeneralizing

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Analysis for Table 2

Page 42: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Analysis for Table 2

•Think about data types…

• Continuous data• Categorical data• (Ordinal data)

Page 43: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Analysis for Table 2

•Two questions to think about when picking a stats test…

• What is my outcome/dependent variable? What is my independent/input variable?

• What type of data do I have for each?• 4 possible combinations:

• 2 variables• 2 data types

Page 44: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

X = inputY = outcomeCat.

Cat.

Cont.

Cont.

T-test

Rank sum

ROC2

Correlation

Analysis for Table 2

Page 45: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Analysis for Table 3

Page 46: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

X = inputY = outcomeCat.

Cat.

Cont.

Cont.

Logistic regression

Linear regression

T-test

Rank sum

ROC2

Correlation

Analysis for table 3

Page 47: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Subset analysis

•Consistency of findings

•Generalizability

Page 48: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

Generalizability

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Page 50: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

“This is not research anymore”

Page 51: David C. Chang, PhD, MPH, MBA Director of Outcomes Research UCSD Department of Surgery Introduction to Outcomes Research Methods and Data Resources.

“That guy”

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