Copyright, 2005 © IASRI, Pusa, New Delhi-12, India SPAR 2.0.
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Transcript of Copyright, 2005 © IASRI, Pusa, New Delhi-12, India SPAR 2.0.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0SPAR 2.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
OBJECTIVESOBJECTIVES
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
• To design and develop the windows version of the SPAR 1.0.
• Development of additional modules which are not available in the SPAR 1.0 and also to build in house capacity for developing similar packages required for other areas of research in agriculture.
SPAR 2.0 Features …SPAR 2.0 Features …
• Statistical Package for Agricultural Research (Statistical Package for Agricultural Research (SPAR 2.0) has been, primarily, developed for the SPAR 2.0) has been, primarily, developed for the statistical analysis of experimental research data in Plant Breeding and Genetics. However statistical analysis of experimental research data in Plant Breeding and Genetics. However many of the programs can be used for the analysis of the data coming from other Disciplines of many of the programs can be used for the analysis of the data coming from other Disciplines of Research, provided the data confirms to the method and design used in the program.Research, provided the data confirms to the method and design used in the program.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
The package consists of the following modules …The package consists of the following modules …
• Data Management ModuleData Management Module
i.i. Editing of DataEditing of Data
ii.ii. Transformation of DataTransformation of Data
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• compute and modify the data using the operatorscompute and modify the data using the operatorsi.i. RelationalRelationalii.ii. NumericNumericiii.iii. ArithmeticArithmeticiv.iv. Logical Logical
• One can transform the data using variousOne can transform the data using variousi.i. LogarithmicLogarithmic
ii.ii. TrigonometricTrigonometric
iii.iii. InverseInverse
iv.iv. Other Mathematical functions.Other Mathematical functions.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• User can either enter the data through the worksheet User can either enter the data through the worksheet of SPAR 2.0 Editor or can browse the data.of SPAR 2.0 Editor or can browse the data.
• Descriptive Statistics ModuleDescriptive Statistics Module consists of consists of the following sub modulesthe following sub modules
i.i. Measures of central tendencyMeasures of central tendency
ii.ii. Measures of dispersionMeasures of dispersion
iii.iii. Generation of momentsGeneration of momentsiv.iv. Measures and coefficients of skewnessMeasures and coefficients of skewnessv.v. Measures and coefficients of kurtosisMeasures and coefficients of kurtosis
vi.vi. Measures of partition valuesMeasures of partition values Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …• Estimation of Breeding ValuesEstimation of Breeding Values ModuleModule can predict breeding values by can predict breeding values byi.i. Fitting of Generation means (as Three, Five and Six parameter model)Fitting of Generation means (as Three, Five and Six parameter model)
ii.ii. Performing Scaling and Joint Scaling TestsPerforming Scaling and Joint Scaling Tests
• Correlation and Regression AnalysisCorrelation and Regression Analysis ModuleModulei.i. Computes Regression coefficientsComputes Regression coefficients
ii.ii. Analysis of variance of regression modelAnalysis of variance of regression model
iii.iii. Regression Equation (Linear and Multiple)Regression Equation (Linear and Multiple)
iv.iv. Simple correlationSimple correlation
v.v. Partial and Multiple correlationsPartial and Multiple correlations
vi.vi. Validity of test of significance Validity of test of significance
vii.vii.Path analysisPath analysisCopyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …• Variance and Covariance Components EstimationVariance and Covariance Components Estimation ModuleModule consists of consists of
• Computation of ANOVAComputation of ANOVA
• Components of Variance such asComponents of Variance such asa.a. PhenotypicPhenotypic
b.b. Genotypic components of variationGenotypic components of variation
• Heritability (broad sense)Heritability (broad sense)
• Standard errorStandard error
• Critical differencesCritical differences
• Bivariate analysis of variance and covariance components.Bivariate analysis of variance and covariance components.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …• Stability AnalysisStability Analysis ModuleModule can be performed by can be performed by
i.i. Eberhart and Russell’s Eberhart and Russell’s
ii.ii. Perkins and JinksPerkins and Jinks
iii.iii. Freeman and Perkins ModelFreeman and Perkins Model
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …• Multivariate AnalysisMultivariate Analysis ModuleModule consists of the following sub modules consists of the following sub modules
i.i. Cluster AnalysisCluster Analysis
ii.ii. Discriminant AnalysisDiscriminant Analysis
iii.iii. Principal Component Analysis.Principal Component Analysis.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
• Cluster AnalysisCluster Analysis ModuleModule is further is further partitioned intopartitioned into
i.i. Hierarchical Cluster AnalysisHierarchical Cluster Analysis
ii.ii. Non-Hierarchical Cluster Analysis.Non-Hierarchical Cluster Analysis.
SPAR 2.0 Features …SPAR 2.0 Features …• Discriminant AnalysisDiscriminant Analysis can be used for can be used for i.i. Estimation of Variance-Covariance MatrixEstimation of Variance-Covariance Matrix
ii.ii. Discriminant functionDiscriminant function
iii.iii. Optimal Linear combinationOptimal Linear combination
iv.iv. Testing the validity of significance .Testing the validity of significance .
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
• Principal Component Analysis Principal Component Analysis can be can be employed foremployed for
i.i. Computation of Variance-Covariance MatrixComputation of Variance-Covariance Matrix
ii.ii. Correlation MatrixCorrelation Matrix
iii.iii. Eigen ValuesEigen Values
iv.iv. Eigen VectorsEigen Vectors
v.v. Principal ComponentsPrincipal Components
vi.vi. Variance of Principal ComponentsVariance of Principal Components
vii.vii. Total variation by original variablesTotal variation by original variables
viii.viii. Total variation by Principal Components and proportion of total variation Total variation by Principal Components and proportion of total variation accounted for by each of the Principal Components.accounted for by each of the Principal Components.
SPAR 2.0 Features …SPAR 2.0 Features …• Mating Design Analysis ModuleMating Design Analysis Module consists of the following sub modules consists of the following sub modules
i.i. Complete DiallelComplete Diallel
ii.ii. Partial DiallelPartial Diallel
iii.iii. Line X Tester (with parents)Line X Tester (with parents)
iv.iv. Line X Tester (without parents)Line X Tester (without parents)
v.v. Three-Way CrossThree-Way Cross
vi.vi. Double Cross Double Cross
vii.vii. North Carolina Designs North Carolina Designs AnalysisAnalysis..
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• It is user-friendly, interactive and password protected It is user-friendly, interactive and password protected package. It is completely menu-driven and can also be package. It is completely menu-driven and can also be operated using the ToolBars of SPAR 2.0 .operated using the ToolBars of SPAR 2.0 .
• Complete Web Help with Index, Contents, Complete Web Help with Index, Contents, Search and Favorites facility is available. Search and Favorites facility is available. The package can be run without the aid of The package can be run without the aid of a manual.a manual.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• This package consists all the necessary details to use the software and also the This package consists all the necessary details to use the software and also the basic definitions including mathematical formulas related to the methods used in basic definitions including mathematical formulas related to the methods used in the package . Moreover it includes samples inputs and outputs of all the modules. the package . Moreover it includes samples inputs and outputs of all the modules. This is a helpful tool for quick understanding of this statistical software. This is a helpful tool for quick understanding of this statistical software.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• This package is also useful for teaching the subject of genetical statistics This package is also useful for teaching the subject of genetical statistics to the post graduate students and helpful for the researchers in statistics to the post graduate students and helpful for the researchers in statistics with special interest in plant and animal sciences. with special interest in plant and animal sciences.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Features …SPAR 2.0 Features …
• The package is completely Standalone and is compatible The package is completely Standalone and is compatible with the Latest Technologies. It runs on WINDOWS with the Latest Technologies. It runs on WINDOWS Platform.Platform.
• Besides the features listed above, the Besides the features listed above, the package also works as an Editor with package also works as an Editor with limited facilities viz. Open, save and print limited facilities viz. Open, save and print files, cut, copy, paste the text; undo the files, cut, copy, paste the text; undo the last action, etc.last action, etc.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Why SPAR 2.0 …Why SPAR 2.0 …• SPAR 1.0 was developed at IASRI, for statistical analysis of SPAR 1.0 was developed at IASRI, for statistical analysis of
experimental research data in Plant Breeding and Genetics experimental research data in Plant Breeding and Genetics using Fortran Language, which was DOS based and had some using Fortran Language, which was DOS based and had some limitation like Dynamic Memory Allocation, Graphic User limitation like Dynamic Memory Allocation, Graphic User Interface. Interface.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Why SPAR 2.0 …Why SPAR 2.0 …
• The package was not able to handle The package was not able to handle large data sets. large data sets.
• So there was a need to develop the So there was a need to develop the Windows Version of SPAR 1.0. Windows Version of SPAR 1.0.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Why SPAR 2.0 …Why SPAR 2.0 …
• SPAR 2.0 is a Windows Version of SPAR 1.0 SPAR 2.0 is a Windows Version of SPAR 1.0 with some additional modules.with some additional modules.
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Modules & Sub - modules
Modules Sub- modules
Data Management
Transformation of data Additional Methods To Be Added
Editing of data New
Descriptive Statistics
Mean Median
Measures of Central Tendency
Mode Range Quartiles Percen tiles Standard Deviation
Measures & Coefficients of dispersion
Mean Deviation Generation of Moments
Karl Pearsons’s Bowley’s
Measures & Coefficients of Skewness
Based upon moments Measures of Kurtosis General Mean & Scaling Tests
Multiple Correlation Linear
Regression Chi- Square test
Test of independence of attributes
Multivariate Analysis
Variance & Covariance Analysis
Cluster Analysis Additional Method To Be Added Discriminant Analysis Principal Components
Mating Design
Complete Diallel Partial Diallel
Path Ana lysis Line X Tester with parent Line X Tester without parent
Three way cross New Double cross New North Carolina New
Stability Analysis
Main Features of this Indigenous Main Features of this Indigenous Software Package …Software Package …
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0SPAR 2.0
Main Screen of Software Main Screen of Software PackagePackage
SPAR 2.0SPAR 2.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Stability Analysis Stability Analysis
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Stability Analysis Stability Analysis
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Stability Analysis Stability Analysis
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
For Entering The Paramters
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results of Clicking Statistics Command Button
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results of Clicking Plot Button
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
For Selection of Cluster Method
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Hierarchical Cluster Analysis Hierarchical Cluster Analysis ……
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Complete Diallel AnalysisComplete Diallel Analysis
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
For Entering The Paramters
Results Generated by SPAR Results Generated by SPAR 2.02.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Editor !!!
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Copyright, 2003 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Help !!!
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
Results Obtained By SPAR 2.0
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0
64 MB RAM2 GB HDStandalone Application No External Dependencies
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India
SPAR 2.0 Cost …SPAR 2.0 Cost …
• It is indigenous Software and is not very It is indigenous Software and is not very expensive.expensive.
• Rs. 1000 for NARSRs. 1000 for NARS
• Rs. 2500 for OthersRs. 2500 for Others
PlusPlus
Postal Charges …Postal Charges …
Copyright, 2005 © IASRI, Pusa, New Delhi-12, India