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Pathway Tools Training Course

Outline for May 2003 Tutorial

Monday 9:30 Introduction 9:45-11 Navigator and microarray data BREAK 11:20-12:30 PathoLogic tutorial and demo LUNCH 2-4 PathoLogic lab session -- build initial version of PGDB BREAK 4:20-5:30 Schema DINNER

Tuesday Editing tools –tutorial/lab sessions Curation strategy

Wednesday Tutorial writing Lisp queries to PGDBs PerlCyc How to send us a bug reports, auto-patch

Outline for July 2001 Jamboree

Monday Introduction (~20 min) PathoLogic tutorial (~1hr) Build initial version of PGDB Schema tutorial (~45 min) Dinner

Tuesday Navigator tutorial 11am (Pedro took 1 hr) Editing Tools tutorial 1:15-3pm (~2hrs)

Wednesday Tutorial on Lisp writing Lisp queries to PGDBs, 10am-12pm (~2hrs) Elliot’s talk at 1:30pm

User Groups

Read-only users / data analysts

Database curators

PathoLogic operators

Day 1: Introduction

Who: All Users

Goal: Familiarize users with read-only operation

Topics: Concept of a Pathway/Genome Database Overview of Pathway Tools components / software architecture The role of integrated pathway/genome databases in drug discovery Pathway/Genome Navigator -- X-windows and WWW operation

Day 2: Database Curation

Who: Users who will manually update a PGDB Users who will run PathoLogic

Goal: Familiarize users with DB curation

Topics Frame data model Schema Concurrency control Pathway/Genome Editors Consistency checking

Day 3: PathoLogic

Who: PathoLogic operators Users who wish to write complex queries

Topics: PathoLogic Pathway Predictor LISP and the Generic Frame Protocol Feedback/evaluation