Converting Dart Hapmap to Hapmap acceptable by...
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Converting Dart Hapmap to Hapmap acceptable by Tassel 1. Open your file in excel an focus to the below columns 2. In the #rs column fill it with marker ID ensure that they unique numbers see below 3. Fill in the chromosome and position information as as below
Transcript of Converting Dart Hapmap to Hapmap acceptable by...
ConvertingDartHapmaptoHapmapacceptablebyTassel1. Openyourfileinexcelanfocustothebelowcolumns
2. Inthe#rscolumnfillitwithmarkerIDensurethattheyuniquenumbersseebelow
3. Fillinthechromosomeandpositioninformationasasbelow
4. Forthechromosomeandpositionsthosethataremissingputdummypositions
seebelow
putdummypositionsasbelow
5. Removeallothercolumnsbeforethe#rs
6. Removethefirstsixrowsthathavemostlyasteri7.
8. Ensurethatyoursamplenamesdonothavespacesbetweenthecharactersyou
canfindareplacetoremoveforspaces.
9. Saveyourfileastxtformat
10. Importthedatatotasselyouwillgetthebelowerror
11. TosortitgotothetasselmenuandselectData–sortgenotypefile(selectyourfileandanoutputfile)seebelow.
12. Nowopenthefileitshouldopen
