Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic...

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Page 1: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.
Page 2: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Control of Cell Volume and Membrane Potential

James Sneyd

Auckland University, New Zealand

Basic reference: Keener and Sneyd, Mathematical Physiology (Springer, 1998)

Page 3: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

A nice cell picture

Page 4: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

• The cell is full of stuff. Proteins, ions, fats, etc.

• Ordinarily, these would cause huge osmotic pressures, sucking water into the cell.

• The cell membrane has no structural strength, and the cell would burst.

Basic problem

Page 5: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

• Cells carefully regulate their intracellular ionic concentrations, to ensure that no osmotic pressures arise

• As a consequence, the major ions Na+, K+, Cl- and Ca2+ have different concentrations in the extracellular and intracellular environments.

• And thus a voltage difference arises across the cell membrane.

• Essentially two different kinds of cells: excitable and nonexcitable.

• All cells have a resting membrane potential, but only excitable cells modulate it actively.

Basic solution

Page 6: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Typical ionic concentrations (in mM)

Squid Giant Axon Frog Sartorius Muscle

Human Red Blood Cell

Intracellular

Na+ 50 13 19

K+ 397 138 136

Cl- 40 3 78

Extracellular

Na+ 437 110 155

K+ 20 2.5 5

Cl- 556 90 112

Page 7: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The cell at steady state

3 Na+

2 K+

Cl-

Ca2+

We need to model

• pumps and exchangers

• ionic currents

• osmotic forces

Page 8: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

OsmosisP1 P2

waterwater +Solvent(conc. c)

At equilibrium:

P1 + kcT = P2

Note: equilibrium only. No information about the flow.

Page 9: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The cell at steady state

3 Na+

2 K+

Cl-

Ca2+

We need to model

• pumps and exchangers

• ionic currents

• osmotic forces

I’ll talk about this a lot more in my next talk.

Na,K-ATPase

CalciumATPase

Page 10: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Active pumping

• Clearly, the action of the pumps is crucial for the maintenance of ionic concentration differences

• Many different kinds of pumps. Some use ATP as an energy source to pump against a gradient, others use a gradient of one ion to pump another ion against its gradient.

• A huge proportion of all the energy intake of a human is devoted to the operation of the ionic pumps.

• Not all that many pump models that I know of. It doesn't seem to be a popular modelling area. I have no idea why.

Page 11: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

A Simple ATPase

E E•ATP E•ATP•L

Ee•ATP•LEe•ATPEe•ADP•P

Inside

Outside

Li

Lo

ATP

ADP + P

k1 k2

k3

k4k5

k6

k-1 k-2

k-3

k-4k-5

k-6

J = k1[ATP ][E] − k−1[E • ATP ]

=

[ATP ][L e ]

[ADP][P][L i]− K1K2K3K4K5K6

a nasty function of the rate constants

=

[ATP ][L e ]

[ADP][P][L i]−

[ATP ]eq[L e ]eq

[ADP]eq[P]eq[L i]eq

a nasty function of the rate constants

Note how the flux is driven by how far the concentrations are away from equilibrium

flux

Page 12: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Reducing this simple model

E E•ATP E•ATP•L

Ee•ATP•LEe•ATPEe•ADP•P

Li

Lo

ATP

ADP + P

k1 k2

k3

k4k5

k6

k-1 k-2

k-3

k-4k-5

k-6

X3

Y3Y2Y1

X1 X2

Page 13: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Na+-K+ ATPase (Post-Albers)

E(N3)

Ee•K2

E(K2)

internal

occluded

external

Ei•K2 Ei•N3Ei

Ee•N3Ee

ATP

P

2Ki+

3Nai+

ADP

2Ke+

3Nae+

1 2

3

4

56

7

8

X1

Y2Y1

Z1 Z2

X3X2

Y3

Page 14: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Simplified Na+-K+ ATPase

X

Z2

Y

Z1

internal

occluded

external

3Nai+ 2Ki

+

2Ke+

3Nae+

ATP

P

ADPk-3

� 3� -8

� 7

� -4

k8

k-7k4

Page 15: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The cell at steady state

3 Na+

2 K+

Cl-

Ca2+

We need to model

• pumps

• ionic currents

• osmotic forces

Page 16: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The Nernst equation

Vi −Ve =RT

Fln

[S]e

[S]i

⎝ ⎜

⎠ ⎟

Note: equilibrium only. Tells us nothing about the current. In addition, there is very little actual ion transfer from side to side.

We'll discuss the multi-ion case later.

[S]e=[S’]e[S]i=[S’]i

Vi Ve

Permeable to S,not S’

(The Nernst potential)

Page 17: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Only very little ion transferspherical cell - radius 25 m

surface area - 8 x 10-5 cm2

total capacitance - 8 x 10-5 F (membrance capacitance is about 1 F/cm2)

If the potential difference is -70 mV, this gives a total excess charge on the cell

membrane of about 5 x 10-12 C.

Since Faraday's constant, F, is 9.649 x 104 C/mole, this charge is equivalent to

about 5 x 10-15 moles.

But, the cell volume is about 65 x 10-9 litres, which, with an internal K+

concentration of 100 mM, gives about 6.5 x 10-9 moles of K+.

So, the excess charge corresponds to about 1 millionth of the background K+

concentration.

Page 18: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Electrical circuit model of cell membrane

C

outside

inside

Iionic C dV/dt

CdV

dt+ Iionic = 0

Vi −Ve = V

How to model this is the crucial question

Page 19: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

How to model Iionic

• Many different possible models of Iionic

• Constant field assumption gives the Goldman-Hodgkin-Katz model

• The PNP equations can derive expressions from first principles (Eisenberg and others)

• Barrier models, binding models, saturating models, etc etc.

• Hodgkin and Huxley in their famous paper used a simple linear model

• Ultimately, the best choice of model is determined by experimental measurements of the I-V curve.

Page 20: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Two common current models

INa = gNa (V −VNa )

INa = PNa

F 2

RTV

[Na+]i −[Na+]e exp −VF

RT( )

1− exp −VF

RT( )

⎢ ⎢

⎥ ⎥

GHK model

Linear model

These are the two most common current models. Note how they both have the same reversal potential, as they must.

(Crucial fact: In electrically excitable cells gNa (or PNa) are not constant, but are functions of voltage and time. More on this later.)

Page 21: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Electrodiffusion: deriving current models

x=0 x=L

[S1+] = [S2

-] = ci[S1

+] = [S2-] = ce

S1

S2

Inside Outside

f (0) = V f ( ) = 0L

cell membrane

d2φ

dx 2= −λ2(c1 − c2), λ2 = stuff × L2

J1 = −D1

dc1

dx+

F

RTc1

dx

⎝ ⎜

⎠ ⎟

J2 = −D2

dc2

dx−

F

RTc2

dx

⎝ ⎜

⎠ ⎟

c1(0) = c i, c1(L) = ce

c2(0) = c i, c2(L) = ce

φ(0) = V , φ(L) = 0

Boundary conditions

Poisson equation andelectrodiffusion

Poisson-Nernst-Planck equations.

PNP equations.

Page 22: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The short-channel limit

If the channel is short, then L ~ 0 and so ~ 0.

Then d2φ

dx 2= 0, which implies that the electric field,

dx, is constant through the membrane.

dx= v ⇒

dc1

dx− vc1 = −J1

⇒ J1 = vc i − cee

−v

1− e−v

⇒ I1 =D1F

2

LRTV

c i − ce exp −VF

RT( )

1− exp −VF

RT( )

⎜ ⎜

⎟ ⎟

This is the Goldman-Hodgkin-Katz equation.

Note: a short channel implies independence of ion movement through thechannel.

Page 23: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The long-channel limit

If the channel is long, then 1/L ~ 0 and so 1/ ~ 0.

Then 1

λ2

d2φ

dx 2= c1 − c2, which implies that c1 ≈ c2 through the membrane.

c1 = c2 ⇒ 2dc1

dx= −J1 − J2

⇒ c1 = c i + (ce − c i)x

⇒ φ = −v

v1

lnc i

ce

+ 1−c i

ce

⎝ ⎜

⎠ ⎟x

⎣ ⎢

⎦ ⎥ v1 = nondimensional Nernst potential of ion 1

⇒ J1 =ce − c i

v1

(v − v1)

This is the linear I-V curve.The independence principle is not satisfied, so no independent movement ofions through the channel. Not surprising in a long channel.

Page 24: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

A Model of Volume Control

Putting together the three components (pumps, currents and osmosis) gives.....

Page 25: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The Pump-Leak Model

3 Na+

2 K+

X-

Cl-

Na+ is pumped out. K+ is pumped in. So cells have low [Na+] and high [K+] inside. For now we ignore Ca2+ (horrors!). Cl- just equilibrates passively.€

−d

dt(qwN i) = gNa V −

RT

Fln

Ne

N i

⎝ ⎜

⎠ ⎟

⎣ ⎢

⎦ ⎥+ 3pq

−d

dt(qwK i) = gK V −

RT

Fln

Ke

K i

⎝ ⎜

⎠ ⎟

⎣ ⎢

⎦ ⎥− 2pq

−d

dt(qwCi) = gCl V +

RT

Fln

Ce

Ci

⎝ ⎜

⎠ ⎟

⎣ ⎢

⎦ ⎥

cell volume

[Na]ipump rate

Note how this is a reallycrappy pump model

Page 26: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Charge and osmotic balance

qw(N i + K i − Ci) + zxqX = qwe (Ne + Ke − Ce )

N i + K i + Ci +X

w= Ne + Ke + Ce

charge balance

osmotic balance

≤−1

• The proteins (X) are negatively charged, with valence zx.• Both inside and outside are electrically neutral.• The same number of ions on each side.

• 5 equations, 5 unknowns (internal ionic concentrations, voltage, and volume). Just solve.

Page 27: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Steady-state solution

If the pump stops, the cell bursts, as expected.The minimal volume gives approximately the correct membrane potential.In a more complicated model, one would have to consider time dependence also. And the real story is far more complicated.

Page 28: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

RVD and RVI Okada et al., J. Physiol. 532, 3, (2001)

Page 29: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Ion transport

• How can epithelial cells transport ions (and water) while maintaining a constant cell volume?

• Spatial separation of the leaks and the pumps is one option.

• But intricate control mechanisms are needed also.

• A fertile field for modelling. (Eg. A.Weinstein, Bull. Math. Biol. 54, 537, 1992.) The KJU model.

Koefoed-Johnsen and Ussing (1958).

Page 30: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Steady state equations

PNavN i − Nme−v

1− e−v

⎝ ⎜

⎠ ⎟+ 3qpN i = 0

PKvK i − Kse

−v

1− e−v

⎝ ⎜

⎠ ⎟− 2qpN i = 0

PClvCi − Cse

v

1− ev

⎝ ⎜

⎠ ⎟= 0

w(N i + K i − Ci) + zX = 0

N i + K i + Ci +X

w= Ns + Ks + Cs

Note the different current and pump models

electroneutrality

osmotic balance

Page 31: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Transport control

Nm

Ns

<1+

3pq

PNa

1+2pq

PK

Simple manipulations show that a solution exists if

Clearly, in order to handle the greatest range of mucosal to serosal concentrations, one would want to have the Na+ permeability a decreasing function of the mucosal concentration, and the K+ permeability an increasing function of the mucosal Na+ concentration.

As it happens, cells do both these things. For instance, as the cell swells (due to higher internal Na+ concentration), stretch-activated K+ channels open, thus increasing the K+ conductance.

Page 32: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Inner medullary collecting duct cells

A. Weinstein, Am. J. Physiol. 274 (Renal Physiol. 43): F841–F855, 1998.

IMCD cellsReal men deal with real cells, of course.

Note the large Na+ flux from left to right.

Page 33: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Active modulation of the membrane potential: electrically excitable cells

Page 34: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Hodgkin, Huxley, and squid

Don't believe people thattell you that this is a smallsquid

Hodgkin Huxley

Page 35: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

The reality

Page 36: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Resting potential• No ions are at equilibrium, so there are continual background currents. At steady-state, the net current is zero, not the individual currents.• The pumps must work continually to maintain these concentration differences and the cell integrity.• The resting membrane potential depends on the model used for the ionic currents.

gNa (V −VNa ) + gK (V −VK ) = 0 ⇒ Vsteady =gNaVNa + gKVK

gNa + gK

PNa

F 2

RT

⎝ ⎜

⎠ ⎟V

[Na+]i −[Na+]e exp(−VF

RT)

1− exp(−VF

RT)

⎝ ⎜

⎠ ⎟+ PK

F 2

RT

⎝ ⎜

⎠ ⎟V

[K+]i −[K+]e exp(−VF

RT)

1− exp(−VF

RT)

⎝ ⎜

⎠ ⎟= 0

⇒ Vsteady =RT

Fln

PNa [Na+]e + PK [K+]e

PNa [Na+]i + PK [K+]i

⎝ ⎜

⎠ ⎟

linear current model (long channel limit)

GHK current model (short channel limit)

Page 37: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Simplifications

• In some cells (electrically excitable cells), the membrane potential is a far more complicated beast.

• To simplify modelling of these types of cells, it is simplest just to assume that the internal and external ionic concentrations are constant.

• Justification: Firstly, it takes only small currents to get large voltage deflections, and thus only small numbers of ions cross the membrane. Secondly, the pumps work continuously to maintain steady concentrations inside the cell.

• So, in these simpler models the pump rate never appears explicitly, and all ionic concentrations are treated as known and fixed.

Page 38: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Steady-state vs instantaneous I-V curves

• The I-V curves of the previous slide applied to a single open channel

• But in a population of channels, the total current is a function of the single-channel current, and the number of open channels.

• When V changes, both the single-channel current changes, as well as the proportion of open channels. But the first change happens almost instantaneously, while the second change is a lot slower.

I = g(V , t)φ(V )

I-V curve of singleopen channel

Number of open channels

Page 39: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Example: Na+ and K+ channels

Page 40: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

K+ channel gating

S0 S1 S2

2� �

2��

S00 S01

S10 S11

dx0

dt= βx1 − 2αx0

dx2

dt= αx1 − 2βx2

x0 + x1 + x2 =1

x0 = (1− n)2

x1 = 2n(1− n)

x2 = n2

dn

dt= α (1− n) − βn

Page 41: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Na+ channel gating

x21 = m2h

dm

dt= α (1− m) − βm

dh

dt= γ(1− h) −δh

2� �

2��

S00 S01

S10 S11

S02

S12

�2�

2��� � � � � �

S i j

inactivation activation

activation

inactivation

Page 42: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Experimental data: K+ conductanceIf voltage is stepped up and held fixed, gK

increases to a new steady level.

gK = g K n4

dn

dt= α (V )(1− n) − β (V )n

τ n (V )dn

dt= n∞(V ) − n

time constant

steady-state

four subunits

Now just fit to the data

rate of rise gives n

steady state gives n∞

Page 43: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Experimental data: Na+ conductanceIf voltage is stepped up and held fixed, gNa

increases and then decreases.

gNa = g Nam3h

τ h (V )dh

dt= h∞(V ) − h

τ m (V )dm

dt= m∞(V ) − m

time constant

steady-state

Four subunits.Three switch on.One switches off.

Fit to the data is a little more complicated now, but still easy in principle.

Page 44: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Hodgkin-Huxley equations

∞€

CdV

dt+ g K n4 (V −VK ) + g Nam3h(V −VNa ) + gL (V −VL ) + Iapp = 0

τ n (V )dn

dt= n∞(V ) − n

τ m (V )dm

dt= m∞(V ) − m, τ h (V )

dh

dt= h∞(V ) − h

generic leak

applied current

much smaller thanthe others

inactivation(decreases with V)

activation(increases with V)

Page 45: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

An action potential

• gNa increases quickly, but then inactivation kicks in and it decreases again.

• gK increases more slowly, and only decreases once the voltage has decreased.

• The Na+ current is autocatalytic. An increase in V increases m, which increases the Na+ current, which increases V, etc.

• Hence, the threshold for action potential initiation is where the inward Na+ current exactly balances the outward K+ current.

Page 46: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.
Page 47: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Basic enzyme kinetics

Page 48: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Law of mass actionGiven a basic reaction

A + B Ck1

k-1

we assume that the rate of forward reaction is linearly proportional to the concentrations of A and B, and the back reaction is linearly proportional to the concentration of C.

d[A]

dt= k−1[C] − k1[A][B]

Page 49: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Equilibrium

Equilibrium is reached when the net rate of reaction is zero. Thus

k−1[C] − k1[A][B] = 0

K1[C] = [A][B], K1 =k−1

k1

= eΔG0 / RTor

This equilibrium constant tells us the extent of the reaction, NOT its speed.

change in Gibb’sfree energy

Page 50: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Enzymes

• Enzymes are catalysts, that speed up the rate of a reaction, without changing the extent of the reaction.

• They are (in general) large proteins and are highly specific, i.e., usually each enzyme speeds up only one single biochemical reaction.

• They are highly regulated by a pile of things. Phosphorylation, calcium, ATP, their own products, etc, resulting in extremely complex webs of intracellular biochemical reactions.

Page 51: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Basic problem of enzyme kinetics

Suppose an enzyme were to react with a substrate, giving a product.

S + E P + E

If we simply applied the law of mass action to this reaction, the rate of reaction would be a linearly increasing function of [S]. As [S] gets very big, so wouldthe reaction rate.

This doesn’t happen. In reality, the reaction rate saturates.

Page 52: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Michaelis and Menten

In 1913, Michaelis and Menten proposed the following mechanism for a saturating reaction rate

S + E k1

k-1

C k2 P + E

Complex. product

• Easy to use mass action to derive the equations.• There are conservation constraints.

Page 53: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Equilibrium approximation

k−1c = k1se

And thus, since

c + e = e0

c =e0s

Ks + s

Thus

V = k2c =k2e0s

Ks + s=

Vmaxs

Ks + s

reaction velocity

Page 54: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Pseudo-steady state approximation

(k−1 + k2)c = k1se

And thus, since

c + e = e0

c =e0s

Km + s

Thus

V = k2c =k2e0s

Km + s=

Vmaxs

Km + s

reaction velocityLooks very similar to previous, but is actually quite different!

Page 55: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Basic saturating velocity

s

V

Vmax

Km

Vmax/2

Page 56: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Lineweaver-Burke plots

1

V=

1

Vmax

+Km

Vmax

1

s

Plot, and determine the slope and intercept to get the required constants.

Page 57: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Cooperativity

S + E k1

k-1

C1k2 P + E

S + C1 k3

k-3

C2k4 P + E

Enzyme can bind two substrates molecules at different binding sites.

or

E C1 C2

E E

S S

S S

P P

Page 58: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Pseudo-steady assumption

c1 =K2e0s

K1K2 + K2s + s2

c1 =e0s

2

K1K2 + K2s + s2

V = k2c1 + k4c2 =(k2K2 + k4s)e0s

K1K2 + K2s + s2

Note the quadraticbehaviour

Page 59: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Independent binding sites

k1 = 2k3 = k+

2k−1 = k−3 = k−

2k2 = k4

E C1 C2

E E

S S

S S

P P

2k+ k+

2k-k-

V = 2k2e0s

K + sJust twice the single binding rate, as expected

Page 60: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Positive/negative cooperativity

Usually, the binding of the first S changes the rate at which the second S binds.

• If the binding rate of the second S is increased, it’s called positive cooperativity

• If the binding rate of the second S is decreased, it’s called negative cooperativity.

Page 61: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Hill equation

In the limit as the binding of the second S becomes infinitely fast, we get a nice reduction.

Let k3 → ∞, and k1 → 0, while keeping k1k3 constant.

V =(k2K2 + k4s)e0s

K1K2 + K2s + s2→

Vmaxs2

Km2 + s2

Hill equation, withHill coefficient of 2.

This equation is used all the time to describe a cooperative reaction. Mostly use of this equation is just a heuristic kludge.

VERY special assumptions, note.

Page 62: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Another fast equilibrium model ofcooperativity

E C1 C2

E E

S S

S S

P P

Let C=C1+C2

V = k2c1 + k4c2 =k2K3 + k4s

s + K3

⎝ ⎜

⎠ ⎟c = ϕ (s)c

k-1

k1 k3

k-3

k2 k4

S + E k1

k-1

C s)P + E

Page 63: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Monod-Wyman-Changeux model

A more mechanistic realisation of cooperativity.

Page 64: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Equilibrium approximation

Don’t even think about a pseudo-steady approach. Waste of valuable time.

Y =r1 + 2r2 + t1 + 2t2

2(r0 + r1 + r2 + t0 + t1 + t2)

K1r1 = 2sr0,K

which gives

Y =sK1

−1(1+ sK1−1) + K2

−1[sK3−1(1+ sK3

−1)]

(1+ sK1−1)2 + K2

−1(1+ sK3−1)2

occupancy fraction

and so on for all the other states

Note the sigmoidal character of this curve

Page 65: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Reversible enzymes

Of course, all enzymes HAVE to be reversible, so it’s naughty to put no back reaction from P to C. Should use

S + E k1

k-1

Ck2

P + Ek-2

I leave it as an exercise to calculate that

V =e0(k1k2s − k−1k−2 p)

k1s + k−1p + k−1 + k2

Page 66: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Allosteric modulation

substrate binding

inhibitorbinding at adifferent site

this state canform no product

(Inhibition in this case, but it doesn’t have to be)

X

Y Z

Page 67: Control of Cell Volume and Membrane Potential James Sneyd Auckland University, New Zealand Basic reference: Keener and Sneyd, Mathematical Physiology.

Equilibrium approximation

(e0 − x − y − z)s − K1x = 0

(e0 − x − y − z)i − K3y = 0

ys − K1z = 0

and thus

x =e0K3

K3 + i

s

K1 + s

V = k2x =Vmax

1+ i /K3

s

K1 + s

X

Y Z

Could change these rate constants, also.

Inhibition decreases theVmax in this model