Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational...

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Computational Computational Toxicology Toxicology and QSAR and QSAR S. MORO – SSVGRC M M S Confidential and Property of ©2012 Molecular Modeling Section Dept. Pharmaceutical and Pharmacological Sciences – University of Padova - Italy by by Stefano Moro Stefano Moro Molecular Modeling Section (MMS) Molecular Modeling Section (MMS) Department of Pharmaceutical and Pharmacological Sciences Department of Pharmaceutical and Pharmacological Sciences University of Padova University of Padova ©2016 ©2016

Transcript of Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational...

Page 1: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

ComputationalComputational ToxicologyToxicology

and QSARand QSAR

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

byby Stefano MoroStefano MoroMolecular Modeling Section (MMS)Molecular Modeling Section (MMS)

Department of Pharmaceutical and Pharmacological SciencesDepartment of Pharmaceutical and Pharmacological Sciences

University of PadovaUniversity of Padova©2016©2016

Page 2: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

FirstFirst ofof all,all, drawdraw youryour structurestructure……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 3: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

FirstFirst ofof all,all, drawdraw youryour structurestructure……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 4: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

ButBut youyou cancan dodo severalseveral otherother

interestinginteresting thingsthings::

Molecular Formula: C13H11FFormula Weight: 186.2248432Composition: C(83.84%) H(5.95%) F(10.20%)Molar Refractivity: 55.66 ± 0.3 cm3

Molar Volume: 175.2 ± 3.0 cm3

Parachor: 425.4 ± 4.0 cm3

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Parachor: 425.4 ± 4.0 cmIndex of Refraction: 1.548 ± 0.02Surface Tension: 34.7 ± 3.0 dyne/cmDensity: 1.062 ± 0.06 g/cm3

Dielectric Constant: Not availablePolarizability: 22.06 ± 0.5 10-24cm3

RDBE: 8Monoisotopic Mass: 186.084479 DaNominal Mass: 186 DaAverage Mass: 186.2248 DaM+: 186.08393 DaM-: 186.085027 Da[M+H]+: 187.091755 Da[M+H]-: 187.092852 Da[M-H]+: 185.076105 Da[M-H]-: 185.077202 Da

Page 5: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

ButBut youyou cancan dodo severalseveral otherother

interestinginteresting thingsthings::

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 6: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

Now,Now, wewe cancan downloaddownload VEGAVEGA……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

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HereHere isis VEGA!VEGA!

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 8: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

HereHere isis VEGA!VEGA!

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 9: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

HereHere isis VEGA!VEGA!

x

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 10: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

andand herehere ourour reportreport……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

Page 11: Computational Toxicology and QSARmms.dsfarm.unipd.it/files/Lezioni/SSVGRC/PDF/... · Computational Toxicology and QSAR M S. MORO – SSVGRC M S Confidential and Property of ©2012

andand herehere ourour reportreport……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

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andand herehere ourour reportreport……

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

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……againagain::

x

x

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

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……againagain::

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy

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EnjoyEnjoy youryour predictionspredictions…… butbut cumcumgranumgranum salissalis !!!!!!

S. MORO – SSVGRCMM S Confidential and Property of ©2012 Molecular Modeling Section

Dept. Pharmaceutical and Pharmacological Sciences –University of Padova - Italy