2824 IEEE TRANSACTIONS ON CYBERNETICS ... - Shantou University
Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University...
-
Upload
mary-dixon -
Category
Documents
-
view
215 -
download
0
Transcript of Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University...
![Page 1: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/1.jpg)
Chapter2Chapter2 Bacterial Physiology Bacterial Physiology
Xin GangDepartment of microbiology and immunolog
y Shantou University medical college
![Page 2: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/2.jpg)
outlineoutline
I. Physical and Chemical Properties
II. Growth and ProliferationIII. MetabolismIV. Cultivation MethodV. Classification and
Nomenclature
![Page 3: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/3.jpg)
I Physical and Chemical I Physical and Chemical PropertiesProperties
i. Chemical compositionWater, inorganic salts, proteins, carbohydrates,
lipids, nucleic acidsMacronutrients(macroelements)
Carbon, oxygen, hydrogen, nitrogen, sulfur, phosphorus and other metal ions (potassium, calcium, magnesium and iron)
The first six(C, O, H, N, S, and P) are components of carbohydrates, lipids, proteins, and nucleic acids.
Micronutrients(trace elements)
![Page 4: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/4.jpg)
ii. Physical properties– Optical property– Surface area– Charged phenomena– Semi-permeability– Osmotic pressure
![Page 5: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/5.jpg)
II Growth and II Growth and ProliferationProliferation
i.i. Bacterial requirements for Bacterial requirements for growthgrowth
– Nutrients– pH– Temperature– Oxygen– Osmotic pressure (Optimal environmental condition)
![Page 6: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/6.jpg)
Nutrients Nutrients Nutrient Requirements
– Carbon sources– Nitrogen sources– Inorganic salts and trace
elements– Growth factors– Water
![Page 7: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/7.jpg)
Nutritional types of bacteria
•Autotrophreduced inorganic molecules
•Heterotrophorganic molecules–saprophyte–parasite
![Page 8: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/8.jpg)
Uptake of nutrients by bacteria
o Passive diffusionsimple diffusionFacilitated diffusion
o Active transport
![Page 9: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/9.jpg)
pHpH• Many bacteria grow best at neutral pH.
(pH 7.2-7.6)• Some specialized bacteria can survive a
nd even grow in acid or alkaline conditions.– T.B. pH 6.5-6.8– V. cholerae pH 8.4-9.2
![Page 10: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/10.jpg)
Temperature and Growth
Temperature Temperature
![Page 11: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/11.jpg)
Optimal T
Psychrophiles 10-20 CMesophiles 20-40 CThermophiles 56-60 C
Heat-shock proteins, Hsp
![Page 12: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/12.jpg)
Temperature ranges for microbial growth
![Page 13: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/13.jpg)
Oxygen Oxygen RequirementsRequirements
• Obligate aerobes– Must grow in the presence of air– They can not carry out fermentation
• Microaerophilic bacterium– Grow well in low concentrations of oxygen– Killed by higher concentrations of oxygen
• Facultative anaerobe– Perform both fermentation and aerobic res
piration– Can survive in the presence of oxygen
• Obligate anaerobe
![Page 14: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/14.jpg)
• Obligate anaerobes– Do not carry out oxidative phosphorylation– Killed by air– Lack certain enzymes
cytochrome and cytochrome oxidacesuperoxide dismutase (SOD) O2
- + 2H+ to H2O2 catalase
2H2O2 to 2H2O + O2peroxidase
H2O2 to H2O using NAD to NADH
![Page 15: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/15.jpg)
ii. Growth and multiplication
Generation time:Generation time:the time required for bacterial mass to double.
20-30min, T.B. 18-20h
mode: Binary fissionmode: Binary fission
![Page 16: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/16.jpg)
TheThe growth curve growth curve
![Page 17: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/17.jpg)
Phases of Microbial Death Phases of Microbial Death CurveCurve
Section of
curvePhase Growth rate
A Lag Zero
B Log Constant
C stationary Decreasing
D Death Negative(death)
![Page 18: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/18.jpg)
CO2CO2
Osmotic pressureOsmotic pressure
![Page 19: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/19.jpg)
III MetabolismIII Metabolism
i. Energy metabolism of bacteria
– Catabolism– anabolism
– Respiration– Fermentation
![Page 20: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/20.jpg)
ii. Metabolic products of bacteria1. Catabolism and biochemical reaction
• Sugar fermentationSugar fermentation• IMViC
Indole Methyl red
VP Citrate utilization
• H2S• Urease
![Page 21: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/21.jpg)
2. Anabolic products of bacteria– PyrogenPyrogen– Toxin and invasive enzyme
(endotoxin, exotoxin)– Pigment– Antibiotics– Bacteriocin– Vitamins
![Page 22: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/22.jpg)
IV Cultivation MethodIV Cultivation Method
i. Environmental factors affecting growthNutrients; pH; Temperature; Aeration ; Ionic st
rength; Osmotic pressureBasic medium
0.3% 牛肉膏1% 蛋白胨0.5% NaCl
Liquid medium
(1-2% agar) Solid medium(0.3-0.5% agar) Semi-solid medium
![Page 23: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/23.jpg)
ii. Growth of bacteria in culture medium
i. Liquid medium or Broth1) Homogeneous turbidity2) Surface3) Bottom
ii. Solid agar mediumColony and mossy1) Smooth colony2) Rough colony3) Mucoid colony
iii.Semi-solid agar medium
![Page 24: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/24.jpg)
iii.Types of Culture mediumbasic medium
nutrient mediumselective mediumdifferential mediumanaerobic medium
![Page 25: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/25.jpg)
iv. Usage of bacterial culturei. Diagnosis, prevention and treatment
of infection diseasesii. Characterization of bacteriaiii. Preparation of vaccines, toxoids and
other biologic prductsiv. Application in industry and agricultu
rev. Uses for genetic engineering
![Page 26: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/26.jpg)
V Classification and V Classification and nomenclaturenomenclatureTaxonomic Taxonomic
ranksranksFormal rank Example
Kingdom ProkaryotaeDivision Gracillicutes
Class ScotobacteriaOrder EubacterialesFamily EnterobacteriaceaeGenus Escherichia
Species Coli
![Page 27: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/27.jpg)
Family : a group of related genera.Genus : group of related species.Species: a group of related strains.Type: sets of strain within a species
– serotype– Phage-type– biotype – genotype
Strain: one line or a single isolate of a particular species.
![Page 28: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/28.jpg)
Bionomial Nomenclature:genus+species
Genus
Species 种名 属名
S. aureus 金黄色 葡萄球菌N. meningitides 脑膜炎 奈瑟菌E. coli 大肠 埃希菌
![Page 29: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/29.jpg)
Chapter3 Chapter3 Disinfection and sterilizationDisinfection and sterilization
![Page 30: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/30.jpg)
outlineoutline
Definition Physical methodsChemical methods
![Page 31: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/31.jpg)
• Disinfection• Sterilization• Antisepsis• Asepsis, asepsis technique
I Definition I Definition
![Page 32: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/32.jpg)
i. Disinfection– killing, or removal of microorga
nisms that may cause disease.– primary goal is to destroy pote
ntial pathogens.
![Page 33: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/33.jpg)
ii. Sterilization– all living cells, viable spores, vir
uses, and viroids are either destroyed or removed from an object or habitat.
– totally free of viable microorganisms, spores, and other infectious agents.
![Page 34: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/34.jpg)
iii.Antisepsis– prevention of sepsis and is
accomplished with antiseptics.
iv.Asepsis – without living
microorganisms
![Page 35: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/35.jpg)
Methods for control of Methods for control of microorganismsmicroorganisms
Physical methods Heat Hot-air sterilizerHot-air sterilizer Autoclaving Autoclaving
Radiation Filtration Ultrasound Dryness Low temperature
Chemical agents
![Page 36: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/36.jpg)
II physical methodsII physical methods
i. Heat1. Dry heat
IncinerationDirect flamesHot-air sterilizer
– 160-170C for 2 hours----spores– Glass petri dishes and pipettes
Infraredmicrowave
![Page 37: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/37.jpg)
2. Moist heatPasteuriztion
• 63C for 30min• Flash pasteuriztion - 72C for 15s• Ultrahigh-temperature(UHT) sterilizati
on-140 to 150C for 1 to 3sBoilingFree-flowing steam disinfectionAutoclaving
• 15 pounds(1.05kg/cm2), 121C for 15-20min
![Page 38: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/38.jpg)
ii. RadiationUltraviolet, UV
• 250-260nm • Quite lethal but does not penetrate glass,
dirt films, water, and other substances very effectively.
• To sterilize the air and any exposed surfaces
• Can burn the skin and damage eyes
Ionizing radiation• An excellent sterilizing agent and
penetrates deep into objects• Cobalt 60 source
![Page 39: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/39.jpg)
iii.Filtration• Rather than directly destroying
contaminating microorganisms, the filter simply removes them.
• Membrane filterMembrane filter
![Page 40: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/40.jpg)
iv.Ultrasoundv. Drynessvi.Low temperatures
![Page 41: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/41.jpg)
III The Use of Chemical III The Use of Chemical Agents in ControlAgents in Control
• Chemical agents– Phenolics 酚– Alcohols 醇– Heavy metals 重金属– Halogens 卤素 – Detergents 去污剂 – Aldehydes 醛
![Page 42: Chapter2 Bacterial Physiology Xin Gang Department of microbiology and immunology Shantou University medical college.](https://reader035.fdocuments.us/reader035/viewer/2022062516/56649e185503460f94b0497a/html5/thumbnails/42.jpg)
• Factors affecting the results – Nature, concentration and acting
time of the disinfectant– Type and amount of the microbe– Temperature– pH– Organic matter