Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and...
-
Upload
karin-farmer -
Category
Documents
-
view
246 -
download
5
Transcript of Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and...
![Page 1: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/1.jpg)
Chapter 7: Hemoglobin:
Portrait of a Protein in Action
Copyright © 2007 by W. H. Freeman and Company
Berg • Tymoczko • Stryer
BiochemistrySixth Edition
![Page 2: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/2.jpg)
Erythrocytes (Red cells)
![Page 3: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/3.jpg)
Hemoglobin and Myoglobin
• These are conjugated proteins. A simple protein has only a polypeptide chain. A conjugated protein has a non-protein part in addition to a polypeptide component. Both myoglobin and hemoglobin contain heme.
• Myoglobin - 17000 daltons (monomeric)153 amino acids
• Hemoglobin - 64500 daltons ( tetrameric) -chain has 141 amino acids-chain has 146 amino acids
![Page 4: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/4.jpg)
Hemoglobin O2 carrying capability
• Erythrocytes/ml blood: 5 billion ( 5 x 109 )
• Hemoglobin/red cell: 280 million ( 2.8 x 108 )
• O2 molecules/hemoglobin: 4
• O2 ml blood: (5 x 109)(2.8 x 108)(4) = (5.6 x 1018)
or (5.6 x 1020) molecules of O2/100 ml blood
![Page 5: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/5.jpg)
A single subunit of Hemoglobin, an tetramer
![Page 6: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/6.jpg)
Myoglobin, monomeric
![Page 7: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/7.jpg)
3o structure overlap: myoglobin, -globin and -globin
-Globin (blue)
-Globin (violet)
Myoglobin (green)
![Page 8: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/8.jpg)
Aromatic Heme
![Page 9: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/9.jpg)
Iron in Hemoglobin binding O2
![Page 10: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/10.jpg)
Iron in Myoglobin binding O2
![Page 11: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/11.jpg)
Resonance in Iron binding O2
![Page 12: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/12.jpg)
Hemoglobin, tetramer
![Page 13: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/13.jpg)
O2 binding: Hemoglobin & Myoglobin
P50 = 2 torr
P50 = 26 torr
![Page 14: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/14.jpg)
O2 transport capability, a comparison
![Page 15: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/15.jpg)
Resting state vs exercise
![Page 16: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/16.jpg)
O2 Binding Changes 4o Structure
![Page 17: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/17.jpg)
Allosteric Proteins
• There are two limiting models of allosterism:
•Monod, Wyman & Changeux: Two State, concerted
•Koshland, Nemethy & Filmer: One State, sequential
• Allosteric effectors (modulators) bind to a protein at a site separate from the functional binding site (modulators may be activators or inhibitors)
• Oxygen binding and release from Hb are regulated by allosteric interactions
• Hemoglobin cooperativity behaves as a mix of the above two models.
![Page 18: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/18.jpg)
Concerted, two state modelMonod, Wyman & Changeux
![Page 19: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/19.jpg)
R-state vs T-state Binding
![Page 20: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/20.jpg)
Sequential, one state model
Koshland, Nemethy & Filmer
![Page 21: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/21.jpg)
Decreasing O2 affinity
2,3-bisphospho-glycerate (2,3-BPG)
• Lowers the affinity of oxygen for Hemoglobin
![Page 22: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/22.jpg)
2,3-bisphosphoglycerate (2,3-BPG)
The binding pocket for BPG contains 4 His and 2 Lys
![Page 23: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/23.jpg)
Binding of bisphosphoglycerate
![Page 24: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/24.jpg)
The Bohr Effect
Bohr Effect:
• Lowering the pH decreases the affinity of oxygen for Hb
![Page 25: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/25.jpg)
Loss of O2 from Hemoglobin
Carbamate:
• CO2 combines with NH2 at the N-terminus of globins
![Page 26: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/26.jpg)
Carbamate formation
Covalent binding at the N-terminus of each subunit
![Page 27: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/27.jpg)
Combined Effects
CO2 , BPG and pHare all allostericeffectors of hemoglobin.
![Page 28: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/28.jpg)
CO2 & Acid from Muscle
![Page 29: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/29.jpg)
CO2 & Hemoglobin Blood Buffering
Metabolic oxidation in cells uses oxygen and produces CO2 .
The pO2 drops to ~20 torr and oxygen is released from incoming HbO2
-.
HbO2- <===> Hb- + O2
Release is facilitated by CO2 reacting with the N-terminus of each hemoglobin subunit, by non-covalent binding of BPG and the Bohr effect.
![Page 30: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/30.jpg)
Events at Cell sites
The localized increase in CO2 results in formation of carbonic acid which ionizes to give bicarbonate and H+.
CO2 + HOH <===> H2CO3 carbonic anhydrase
H2CO3 <===> HCO3- + H+ pKa = 6.3
The increase in [H+] promotes protonation of Hb-.
HHb <===> Hb- + H+ pKa = 8.2
![Page 31: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/31.jpg)
Events at Cell sites
The predominant species in this equilibrium at pH 7.2 is HHb.
So, O2 remains at the cell site, HHb carries a proton back to the lungs and bicarbonate carries CO2 .
Charge stability of the erythrocyte is maintained via a chloride shift, Cl- <==> HCO3
- .
![Page 32: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/32.jpg)
![Page 33: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/33.jpg)
Events at Lung sites
Breathing air into the lungs increases the partial pressure of O2 to ~100 torr.
This results in O2 uptake by HHb to form HHbO2.
HHb + O2 <===> HHbO2
Ionization of HHbO2 then occurs and HbO2-
carries O2 away from the lungs.
HHbO2 <===> HbO2- + H+ pKa = 6.6
So, the predominant species at pH (7.4) is HbO2-.
![Page 34: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/34.jpg)
Events at Lung sites
The localized increase in [H+] from hemoglobin ionization serves to protonate HCO3
- .
H2CO3 <===> HCO3- + H+ pKa = 6.3
H2CO3 <===> CO2 + HOH carbonic anhydrase
The resulting H2CO3 decomposes in presence of carbonic anhydrase and CO2 is released in the lungs.
Charge stability of the erythrocyte is maintained again via a chloride shift, HCO3
- <==> Cl-.
![Page 35: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/35.jpg)
Sickle Cell due to Glu 6 Val 6
![Page 36: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/36.jpg)
![Page 37: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/37.jpg)
Binding relationships
The binding of O2 to myoglobin can be shown by the equilibriuim:
Mb + O2 <===> MbO2 (1)
The dissociation constant for the loss of O2 is: [Mb][O2]
Keq = KD = -------------- (2) [MbO2]
Define the fraction of sites, Y, occupied by O2 as: [MbO2] sites bound
Y = --------------------- = ----------------- (3) [Mb] + [MbO2] total sites
![Page 38: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/38.jpg)
Binding relationships
Substituting from equation (2) into (3): [MbO2] 1
Y = ---------------------------- = ------------K [MbO2] K ---------- + [MbO2] ---- + 1 O2 O2
or: [O2] pO2 pO2 Y = ---------- = ----------- = ------------
K + O2 K + pO2 p50 + pO2
Evaluating K at Y = 0.5 gives K = p50 for O2
![Page 39: Chapter 7: Hemoglobin: Portrait of a Protein in Action Copyright © 2007 by W. H. Freeman and Company Berg Tymoczko Stryer Biochemistry Sixth Edition.](https://reader033.fdocuments.us/reader033/viewer/2022061609/56649ceb5503460f949b5f28/html5/thumbnails/39.jpg)
End of Chapter 7
Copyright © 2007 by W. H. Freeman and Company
Berg • Tymoczko • Stryer
BiochemistrySixth Edition