Chap 2. The Purification of Enzymes -...
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Transcript of Chap 2. The Purification of Enzymes -...
![Page 1: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/1.jpg)
Chap 2. The Purification of Enzymes
• To understand the behaviors of an enzyme in a complex system, it should be understood in a simple system
![Page 2: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/2.jpg)
The Aim of a Purification Procedure
• The maximum possible yield: – recovered activity
• The maximum catalytic activity: – no degraded or other inactivated enzymes
• The maximum possible purity: – no other enzymes or large molecules
• A suitable assay procedure needed• Unit (u): μmol/min• Specific activity: u/mg
![Page 3: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/3.jpg)
Strategy in Enzyme Purification
• Source of enzyme• Methods of homogenization• Methods of separation
![Page 4: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/4.jpg)
Choice of Source
• A source in which the required enzyme occurs in large amounts
• A suitable expression system for the recombinant enzyme
• Prokaryotes• Eukaryotes: yeasts, insect cells
![Page 5: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/5.jpg)
Prokaryotic Expression Systems
Prokaryotes: E. coli• Advantages:
– rapid growth – relatively simple nutritional requirements, – strong promoters available – controllable expression by inducers or change in
the culture medium• Disadvantages:
– lack of the correct machinery for post-translational modifications
– often insoluble inclusion bodies formed
![Page 6: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/6.jpg)
Candida antarctica Lipase B
1TCA
![Page 7: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/7.jpg)
Eukaryotic Expression Systems
Low eukaryotes: yeasts• Saccharomyces cerevisiae:
– good growth rates on simple media – well understood at a genetic level – efficient secretion available by suitable signal
sequences– difficult to grow to high cell densities in continuous
culture – a tendency to hyperglycosylate proteins
• Kluyveromyces lactis• Pichia pastrois:
– high level of expression available using the promoter from the tightly regulated AOX1 gene
![Page 8: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/8.jpg)
Methods of homogenization
• Mammalian tissue: – lack of a rigid cell wall
• easy homogenization• Plant, fungal, and bacterial material:
– rigid cell wall harsher methods required: grinding with abrasives, freezing and thawing, long periods of blending, addition of glass beads, a French press
– using appropriate hydrolytic enzymes: lysozyme, chitinase and 3-glucanases
• Extraction of membrane-bound enzymes: – detergents required
![Page 9: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/9.jpg)
Methods of separation• Size, charge, solubility, and the possession of
specific binding sites
![Page 10: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/10.jpg)
Choice of Methods
• Considering factors for choice of methods1. The scale of the preparation and the yield of enzyme required2. The time available for the preparation3. The equipment and expertise available in the lab.
• Earlier stages (or large scale): methods based on changes in solubility
• Latter stages (or small scale): column chromatography or electrophoresis
![Page 11: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/11.jpg)
Judging the Success of a Purification Procedure
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Tests for Catalytic Activity
• Checking optimality of the assay conditions • Investigating the enzyme stability during storage
![Page 13: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/13.jpg)
Active Site Titrations
• Estimation of the amount of active enzyme
![Page 14: Chap 2. The Purification of Enzymes - SUNGSHINweb.sungshin.ac.kr/~spark/class/enzchem/EnzChem_ch02.pdf · Chap 2. The Purification of Enzymes ... • Methods of separation. Choice](https://reader031.fdocuments.us/reader031/viewer/2022030420/5aa713c87f8b9a6d5a8bd724/html5/thumbnails/14.jpg)
Ser95
OO
O
R
H
H
N
N
Met96
Trp29
HNN
His252
HO
O
Asp223
OO
R
Ser95
O H
H
N
N
Met96
Trp29
NN
His252
HO
O
Asp223
H
Ser95
OH
H
N
N
Met96
Trp29
NN
His252
HO
O
Asp223
O
R
MeOH
Ser95
OOH
O
R
H
H
N
N
Met96
Trp29
HNN
His252
HO
O
Asp223 H2O
OHO
R
acyl enzyme
Td2
free enzyme
Td1
OP
OO
NO2
Mechanism of Pseudomonas fluorecens Esterase
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Purification Procedures of RNA Polymerase from E. coli