Dr. Mohammed Vaseem. Simple Lipids Compound Lipids Derived Lipids LIPIDS.
Cells have 500-1000 different lipids; Why? How? Lipidomics
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Transcript of Cells have 500-1000 different lipids; Why? How? Lipidomics
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Cells have 500-1000 different lipids; Cells have 500-1000 different lipids; Why? How?Why? How?LipidomicsLipidomics
30% of the cellular proteins are membrane proteins30% of the cellular proteins are membrane proteinsProteomicsProteomics
How do cells use proteins and lipids for their vital functions?How do cells use proteins and lipids for their vital functions?Systems BiologySystems Biology
In many cases there must be an interplay between the lipids In many cases there must be an interplay between the lipids and the proteins! They co-evolved in evolution.and the proteins! They co-evolved in evolution.
Cholesterol trafficking machineryCholesterol trafficking machineryGerrit van Meer; [email protected] van Meer; [email protected]
Membrane EnzymologyMembrane EnzymologyBijvoet Center / Institute of BiomembranesBijvoet Center / Institute of Biomembranes
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PG
OH
GlycerolipidsGlycerolipids SterolsSterols
sphingomyelinglycosphingolipids
glycerophospholipidsPC, PE, PS, PI
OHOH N
O O
OO
O
O
O
SphingolipidsSphingolipids
65 mol% 10% 25%
glycerolglycerol sphingosinesphingosine cholesterolcholesterol
fattyfattyacidacid
fattyfattyacidacid
glucose
oleicoleicacidacid
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AA
PPGG
OHOH
GlycerolipidsGlycerolipidsGlycerolipidsGlycerolipids SterolsSterolsSterolsSterols
SphingomyelinSphingomyelin GlycosphingolipidsGlycosphingolipidsPC, PE, PS, PIPC, PE, PS, PI CholesterolCholesterol
OHOH
OHOH
OO OOOHOH
OO OO
SphingolipidsSphingolipidsSphingolipidsSphingolipids
65 mol%65 mol% 10% 10% 25% 25%
AA
PP
OO
OO
OO
OO
OO
AA
PP
OO
OO
OO
OO
OO
NNNN
PP = phosphate= phosphate AA = choline, ethanolamine, serine, inositol= choline, ethanolamine, serine, inositol GG = glucose= glucose
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The hydrophobic effectThe hydrophobic effectNonpolar molecules break the organizationNonpolar molecules break the organization
of the water; caged waterof the water; caged waterAggregation increases the entropy of the Aggregation increases the entropy of the
water more than the decrease in water more than the decrease in entropy of the nonpolar moleculeentropy of the nonpolar molecule
Lipid molecules will not dissolve in waterLipid molecules will not dissolve in water
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Membranes consisting of unsaturated phospholipids
are in the liquid phase; fluidCholesterol reduces fluidityMembranes consisting
of saturated phospholipids are in the gel phase; solidCholesterol fluidizes
A second fluid state exists
Solid-fluid immiscibilityFluid-fluid immiscibility
Fluidity does not increase linearly with cholesterol content:“phase transitions”
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lo
ld + lo
CholesterolCholesterol
ldld + lo + so
ld + so
POPCPOPC PSMPSM
OH
C
P
OH NO O
C
P
OO
O
O
O
Phase diagram of the ternary mixturePhase diagram of the ternary mixturepalmitoyl-oleoyl phosphatidylcholine, palmitoyl-oleoyl phosphatidylcholine, palmitoyl sphingomyelin,palmitoyl sphingomyelin,cholesterolcholesterol
de Almeida et al. (2003) de Almeida et al. (2003) Biophys. J. 85, 2406Biophys. J. 85, 2406
lo + solo + so
soso
Follow any line from the bottomFollow any line from the bottom(chol = 0) to the top (chol = 100)(chol = 0) to the top (chol = 100)and you cross phase boundaries:and you cross phase boundaries:Phase transitions.Phase transitions.
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Proteins are sorted by lateral segregation into different coated pitsProteins are sorted by lateral segregation into different coated pitsThis must also occur for lipids. How does a certain lipid compositionThis must also occur for lipids. How does a certain lipid compositionrecoggnize and capture a certain SNARE required for targeting?recoggnize and capture a certain SNARE required for targeting?
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Segregation of transferrin Segregation of transferrin Tfn Tfn (recycling) and epidermal (recycling) and epidermal growth factor growth factor EGFEGF (to late endosomes) after endocytosis (to late endosomes) after endocytosis
Sharma et al (2003) JBC 278, 7564Sharma et al (2003) JBC 278, 7564
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Concentration of fluorescent (Bodipy-) glycosphingolipid LacCer in Concentration of fluorescent (Bodipy-) glycosphingolipid LacCer in endosome subdomainsendosome subdomains
(green: low concentration; red high concentration)(green: low concentration; red high concentration)Sharma et al (2003) JBC 278, 7564Sharma et al (2003) JBC 278, 7564
EndocytosisEndocytosis
Removal of Bodipy-LacCerRemoval of Bodipy-LacCerfrom surfacefrom surface
Insertion of BodipyInsertion of BodipyLacCer on surfaceLacCer on surface
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Lipids spontaneously aggregated during endocytosisLipids spontaneously aggregated during endocytosisThis must have involved lateral segregationThis must have involved lateral segregation
Does this only occur during endocytotic recycling?Does this only occur during endocytotic recycling?
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PSPS PEPE
SMSM PCPC GlcCerGlcCer
PCPC PEPE
cholesterolcholesterol
Plasma membrane
ER
Golgi
Cellular membranes differ in lipid composition:Cellular membranes differ in lipid composition:because ER and plasma membrane are connected bybecause ER and plasma membrane are connected byvesicular transport in both directions sorting must take placevesicular transport in both directions sorting must take place
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ER
G
TGN E
L
Sphingolipids and cholesterolSphingolipids and cholesterol
UnsaturatedUnsaturated PCPC
P
OO
O
O
O
C
OH
PO
OH
O
N
CLipid sorting must occur at the GolgiLipid sorting must occur at the Golgi
Lipid raft microscopy: Eggeling, C., Ringemann, C., Medda, R., Lipid raft microscopy: Eggeling, C., Ringemann, C., Medda, R., Schwarzmann, G., Sandhoff, K., Polyakova, S., Belov, V.N., Hein, B., Schwarzmann, G., Sandhoff, K., Polyakova, S., Belov, V.N., Hein, B.,
von Middendorff, C., Schonle, A., et al. 2009. Direct observation of the von Middendorff, C., Schonle, A., et al. 2009. Direct observation of the nanoscale dynamics of membrane lipids in a living cell. nanoscale dynamics of membrane lipids in a living cell. Nature 457:1159-1162.Nature 457:1159-1162.
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P
20 nm
HDL
Apo-A1
The lipoprotein LDLThe lipoprotein LDLPhospholipidPhospholipid
TriacylglycerolTriacylglycerol
Cholesterol esterCholesterol ester
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DAGDAG CerCerCholChol
LPCLPCPCPC gangliosideganglioside
1010-1 -1 s seconds 10 h >10 hs seconds 10 h >10 h
Lipid structure predicts flip rate in model membraneLipid structure predicts flip rate in model membrane
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DAGDAG CerCer LPCLPCPCPC gangliosideganglioside
Bodipy 10Bodipy 1022 h 10 min 10 minh 10 min 10 min
NativeNative 60 h < 10 60 h < 1022 s 10s 1033
hh
Lipid structure predicts “off rate” in model membraneLipid structure predicts “off rate” in model membrane
CholesterolCholesterol< 2 hours< 2 hours
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Outside
Cytosol
Lumen
cholesterol cholesterol glucosylceramideglucosylceramide
1.1. Lateral mobilityLateral mobility ++ ++2.2. Vesicular trafficVesicular traffic ++ ++3.3. Flip-flop Flip-flop ++ ––4.4. Monomolecular transfer Monomolecular transfer ++ ––
2
1
4
3
Transport mechanisms of lipidsTransport mechanisms of lipids
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Cholesterol moves rapidly across membranes Cholesterol moves rapidly across membranes Cholesterol moves rapidly between membranesCholesterol moves rapidly between membranes
Thus its localization must be determined Thus its localization must be determined by affinity for other lipids or proteinsby affinity for other lipids or proteins
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Cholesterol binds to specific proteinsCholesterol binds to specific proteinsThiele et al. (2000) Thiele et al. (2000) Nature Cell Biol 2, 42-49Nature Cell Biol 2, 42-49
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Interactions of proteins with membranesInteractions of proteins with membranes
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Cholesterol has an increased affinity for some types of lipids (saturated Cholesterol has an increased affinity for some types of lipids (saturated glycerophospholipids and sphingolipids), and for some sorts of proteins. glycerophospholipids and sphingolipids), and for some sorts of proteins. The high affinity of cholesterol for a certain protein may make this The high affinity of cholesterol for a certain protein may make this a raft protein just like the effect of palmitoylationa raft protein just like the effect of palmitoylation
Still, cholesterol moves quickly between and across membranes. What isStill, cholesterol moves quickly between and across membranes. What isthe problem? the problem?
Well there are a number of cholesterol transport diseases that are causedWell there are a number of cholesterol transport diseases that are causedby mutations in what may be cholesterol transport proteins. by mutations in what may be cholesterol transport proteins. What do they do?What do they do?
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ERER
GG
LL
EE
NN
ABCA1ABCA1
ABCG5/G8 ABCG5/G8 NPC1L1NPC1L1
NPC1NPC1NPC2NPC2MLN64MLN64
StARStAR MM
SCPSCP
Proteins of cholesterol transportProteins of cholesterol transport