Campbell, Quantifying uncertainty in ecology: Examples from small watershed studies.
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Transcript of Campbell, Quantifying uncertainty in ecology: Examples from small watershed studies.
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Quantifying Uncertainty in Ecology: Examples from Small Watershed Studies
Ecological Society of America Meeting
Minneapolis, MN - August 2013
John Campbell – US Forest ServiceRuth Yanai – SUNY-ESF
Mark Green – Plymouth State Univ.
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LTER Workshop Participants
Campbell, J.L., Yanai, R.D., Green, M.B., Levine, C. R, Adams, M.B., Burns, D.A., Buso, D.C., Harmon, M.E., LaDeau, S.L., McDowell, W.H., Parman, J.N., Sebestyen, S.D., Shanley, J.B., Vose, J.M.
Fernow - WVBiscuit Brook - NY HJ Andrews - ORLuquillo - PR Niwot Ridge – COMarcell - MNSleepers River – VTCoweeta – NC
Sites
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QUEST is a NSF funded Research Coordination Network (PI: Ruth Yanai)
The goal is to improve understanding and facilitate use of uncertainty analyses in ecosystem studies.
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• Visit our website (www.quantifyinguncertainty.org)• Download papers and
presentations• Get sample code• Stay updated with QUEST News
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Become a part of QUEST!
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Paired watershed studies
• Watersheds are unreplicated
• It’s difficult to find suitable replicate watersheds and expensive to treat them
• Uncertainty analysis can be used to report statistical confidence Andréassian 2004 Journal of
Hydrology 29:1-27
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Easier said than done…
• Difficult to identify sources of uncertainty
• Difficult to quantify sources
• Multiple approaches to uncertainty analysis
• No single answer
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W6W5
• Net hydrologic flux = precipitation inputs minus stream outputs
• W5 - whole tree harvest during winter of 1983-1984
• All trees >5 cm dbh were removed (boles and branches)
• Purpose: evaluate impact of this more intensive management practice on nutrient removals and site productivity
Uncertainty in the flux of Ca
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Water year (June 1)
1960 1970 1980 1990 2000 2010
Net
hyd
rolo
gic
flux
(kg
ha-1
yr-
1)
-24
-21
-18
-15
-12
-9
-6
-3
0
W6 (reference)W5 (harvested)
Ca response to harvesting
Harvest
Calcium data courtesy G.E. Likens
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Sources of uncertainty
Precipitation • Interpolation model
• Collector undercatch
• Chemical analysis
• Gaps in chemistry
Stream water• Watershed area
• Rating curve
• Gaps in discharge
• Chemical analysis
• Streamwater
interpolation model
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Precipitation interpolation method
0 1000 m
1000 1600 mm
Precip. gageWatershed
Precip.
W6 W5 W4W2
W3
W7W8
W9
W1 W6 W5 W4W2
W3
W7W8
W9
W1
W6 W5 W4W2
W3
W7W8
W9
W1
W6 W5 W4W2
W3
W7W8
W9
W1
Kriging
W6 W5 W4W2
W3
W7W8
W9
W1Inverse distanceweighting
Thiessen polygon
Spline
Regression
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Precipitation interpolation method
W1 W2 W3 W4 W5 W6 W7 W8 W9
Ann
ual p
reci
p. (
mm
)
1340
1360
1380
1400
1420
1440
1460
1480
1500
1520
ThiessenKrigingIDWSplineRegression
Uncertainty = 0.6%
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Chemical analyses
Uncertainty = 1.0%
• Precision describes the variation in replicate analysis of the same sample
• At Hubbard Brook, one sample of every 40 is analyzed four times
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Watershed area
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Watershed area
W6
Uncertainty = 2.3%
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Gaps in streamflow
• 7% of streamflow record is gaps• 65% due to the chart recorder (53% clock)
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Gaps in streamflow
Uncertainty = 3.3%
• Randomly generate fake gaps
• Fill the gaps based on regression from the reference watershed
• Calculate the different between the predicted and actual value
• Repeat thousands of times
• More detail to follow
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What is Monte Carlo analysis?
1) Select a distribution to describe possible values (not necessary to assume a normal distribution)
2) Generate data from this distribution
3) Use the generated data as possible values in the calculation to produce output
Monte Carlo simulations use repeated, random sampling to compute results.
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Streamflow
Monte Carlo approach
Watershed Area
Net Hydrologic Flux
Etc.
Calculation
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Ca response to harvesting
Harvest
Water year (June 1)
1960 1970 1980 1990 2000 2010
Ne
t hyd
rolo
gic
flu
x (k
g h
a-1
yr-
1)
-24
-21
-18
-15
-12
-9
-6
-3
0
W6 (reference)W5 (harvested)
Harvest
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Ca response to harvesting
W6 Ca Net hydrologic flux (kg/ha/yr)
-25 -20 -15 -10 -5 0
W5
Ca
net
hydr
olog
ic f
lux
(kg/
ha./
yr)
-25
-20
-15
-10
-5
0
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Contributions to uncertainty
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Conclusions
• Uncertainty analysis can be used in cases where replication is not possible
• Monte Carlo is just one of many possible approaches
• There’s no such thing as a perfect uncertainty analysis
• It’s important to report how the uncertainty was calculated
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Acknowledgments
Funding was provided by the NSF and LTER Network Office. Calcium data were obtained through funding from the A.W. Mellon Foundation and the NSF, including LTER and LTREB.
LTER Workshop Participants
Craig SeeBrannon Barr
Gene Likens
Amey BaileyIan HalmNick GrantTammy WoosterBrenda Minicucci
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www.quantifyinguncertainty.org