BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf...
Transcript of BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf...
![Page 1: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/1.jpg)
BRENDA Tutorial
BRENDA Tissue OntologyBTO
![Page 2: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/2.jpg)
The BTO is a comprehensive
structuredencyclopedia…
![Page 3: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/3.jpg)
…to connect enzymedata with the Source Tissue information in
BRENDA.
![Page 4: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/4.jpg)
On the BTO page you find a form to search for a specificterm, including text miningresults…
![Page 5: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/5.jpg)
…or you can restrict your searchto manually annotated BRENDA information.
![Page 6: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/6.jpg)
In the Tree View you canbrowse along the different
classification categories(animal, fungi, plant etc..
![Page 7: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/7.jpg)
Click on the (+) icon to expandand on the (-) icon to collapsea Tree View branch.
![Page 8: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/8.jpg)
You can get the definition ofthe Source Tissue via a mouseover across the term.
![Page 9: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/9.jpg)
The abbreviations areexplained in the legend
![Page 10: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/10.jpg)
In the box you find more details…
BTO-ID
definition
references
![Page 11: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/11.jpg)
…and the number of all EC numbers listed in a dropdown menu directly linkedto the BRENDA Enzyme Summary Pages.
![Page 12: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/12.jpg)
To search for more details on the enzyme source you can
perform a query by clicking on
![Page 13: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/13.jpg)
You can either searchfor the exact term…
![Page 14: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/14.jpg)
...or search for the termincluding all descendants
![Page 15: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/15.jpg)
On the result page all enzymesconnected to the enzymesource of interest are listed.
![Page 16: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/16.jpg)
By clicking on the EC number the Enzyme Summary Page will be opened…
![Page 17: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/17.jpg)
…to find all dataincluding furtherenzyme sources.
![Page 18: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/18.jpg)
If you are interested in other enzyme sources, click on the term…
![Page 19: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/19.jpg)
…and you will be back on theBTO web page…
![Page 20: BRENDA Tutorial · BRENDA eli Jr Term or Synonym: AND trjct to BRENDA links: te of Download s cf went s 8 of el —t R] IS to from went n' I n to BRENDA evaluate BRENDA.' Tissue C)](https://reader036.fdocuments.us/reader036/viewer/2022071009/5fc744537d89516d5976c1f7/html5/thumbnails/20.jpg)
…to receive more detailedinformation.