BMB 601 Chemical Exchange and NMR Hari Hariharan Ph.D. Senior Research Investigator Center of...
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Transcript of BMB 601 Chemical Exchange and NMR Hari Hariharan Ph.D. Senior Research Investigator Center of...
BMB 601Chemical Exchange and NMR
Hari Hariharan Ph.D.Senior Research Investigator
Center of Magnetic Resonance & Optical ImagingDepartment of Radiology
School of MedicineUniversity of Pennsylvania
Outline
• Recap from relaxation• Definition of Chemical Exchange and Bloch
Equations• Single Pulse spectra • NMR Time Scale and Chemical Exchange• Selective Preparation experiments• Applications
Recap from relaxation
Energy Equations• E = (h/2)**B0
• (N0/N
0) = exp(-E/kT)• n = (N
0 - N0)
• n = (1-exp(-E/kT)) / (1 + exp(-E/kT))
• n ~ (E/kT) / 2• M0 n
Relaxation Effects• Spectral density for T1
& T2• Spin Diffusion for T2• Modified Bloch
Equations (dMz/dt) = (MxBy-MyBx) – R1(Mz-M0)
(dMy/dt) = (MzBx-MxBz) – R2My (dMx/dt) = (MyBz-MzBy) – R2Mx
• Methods of T1 and T2 Measurements
Chemical Exchange Definition
Chemical exchange refers to any process in which a nucleus exchanges between two or more environments in which its NMR parameters (e.g. chemical shift, scalar coupling, or relaxation) differ.
Chemical Exchange – McConnell Equations
To describe chemical exchange, we can continue with semi-classical description and use a set of modified Bloch equations (also known as McConnell equations, after H.M. McConnell who derived them in 1958).
Note: R1,R2 here are not 1/T1 and 1/T2, rather the relaxation matrix for species 1&2 with R11,R21,R12 and R22 terms.
Single Pulse Spectra 1 What happens if you apply a 90 deg pulse and try to get a
spectrum with chemical exchange? Immediately after the 90 deg pulse:
with further evolutions given by
Single Pulse Spectra-2
Since we are interested only is the evolution of detected signals M1 and M2:
Ignoring relaxation:
Single Pulse Spetra-4Slow Exchange: k << |1-2|
Note: Original assumption about no relaxation. All line width is from exchange
Single Pulse Spetra-5Fast Exchange: k >>|1-2|
Note: Original assumption about no relaxation. All line width is from exchange
Symmetric Exchange Simulation
Spectral Simulation
Source: http://www.shokhirev.com/nikolai/abc/nmrtut/NMRtut4.html
Selective Preparation experiments
How to handle direct excitation effects?
AB B’
Two experiments are run with preparation pulse placed symmetrically about observe signal position(B and B’). Now the difference in signal from the two experiments reveals the effect of Chemical Exchange without direct signal excitation effects… Z-spectrum. New endogenous contrast mechanisms.
Summary• Chemical Exchange effects can be understood through modified
Bloch Equations.• Slow and Fast Exchange regimes are easily understood.
Intermediate Exchange regimes need numerical analysis.• Exchange can modify both the position as well as the line shape of
the observed spectrum.• Selective preparation experiments are a powerful tool to probe
Chemical Exchange effects.• Chemical exchange effects can be utilized to produce endogenous
contrast effects.• NMR is suitable to probe chemical kinetics under the slow exchange
regime.• More applications yet to be discovered.