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Treating Schizophrenia: Keepin’ it Reelin Bradley Van Rooy, Jessica Dewey, Tracy Dinh, Kate Geschwind, Willie Meder, Colleen Smith, Jonah Widmer, Kristen Woodhouse Schizophrenia: A Chronic Psychotic Syndrome. 1,2 •Patients falsely interpret reality •Severely debilitating symptoms include delusions, hallucinations, and impaired social and communicative functioning •2.4 million patients in America each year May be caused by decreased expression of RELN gene 3,4,5 •RELN protein product, reelin, causes appropriate neuronal positioning •50% less reelin in schizophrenic patients •Due to hypermethylation of RELN gene RELN Transcription Factor: T-box brain 1 is the protein product of Tbr1 6,7,8 •Less Tbr1 expression means less reelin •More Tbr1 means more reelin Reeler mice (Mus musculus) as a model organism for schizophrenia 9,10,11,12 •Deleterious RELN gene disrupts reelin signaling pathway •Heterozygous mice have 50% less reelin Our experiment seeks to increase RELN transcription in reeler mice •Deliver transcription activator to mouse brains using exosome treatment •The goal is to increase RELN expression, improve neural connectivity, and achieve therapeutic alleviation of schizophrenic symptoms RELN: An ancestral character for the Eutheria clade. 13 Maximum parsimony phylogenetic tree shows evolutionary relationship between humans, mice Orthologs of Homo sapiens RELN have been located in 86 mammals. H. sapiens RELN is conserved in 9 of these mammals, including Mus musculus. 14 Research methods applied in M. musculus may eventually be applied to orthologous species. Large number of RELN paralogs exist in every species that carries RELN. pUC19 Plasmid contains all necessary coding regions. 21,34 rep region causes replication. bla region (Ap r ) confers ampicillin resistance as screening system. lacZ gene, its promoter, lac repressor binding site as reporter system. Tbr1 inserted at multiple cloning site. Animal research must be ethical. 35 •Clear purpose of benefit and justified as a “last resort” measure •Animal welfare maintained •Follow IACUC guidelines for animal treatment as per www.iacuc.org •Humane surgical procedures; multiple surgeries approved 1. Schizophrenia. (2014, January 24). Diseases and Conditions: Schizophrenia. Retrieved April 20, 2014, from http://www.mayoclinic.org/diseases-conditions/schizophrenia/basics/symptoms/con-20021077, 2. The Numbers Count: Mental Disorders in America. (n.d.). NIMH RSS. Retrieved April 20, 2014, from http://www.nimh.nih.gov/health/publications/the-numbers-count-mental-disorders-in-america/index.shtml#Schizophrenia, 3. Balthazart, J., Voigt, C., Boseret, G., & Ball, G. (2008). Expression of reelin, its receptors and its intracellular signaling protein, disabled-1 (dab-1) in the canary brain: Relationships with the song control system. Journal of Neuroscience, 153(4), 944-962. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836269, 4. Abdolmaleky, H. M., Cheng, K. H., Russo, A., Smith, C. L., Faraone, S. V., Wilcox, M., ... &Tsuang, M. T. (2005). Hypermethylation of the reelin (RELN) promoter in the brain of schizophrenic patients: a preliminary report. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics , 134(1), 60-66. 5. Costa, E., Chen, Y., Davis, J., Dong, E., Noh, J. S., Tremolizzo, L., ... &Guidotti, A. (2002).REELIN and Schizophrenia. Molecular interventions, 2(1), 47. 6. TBR1 T-box, brain, 1 .Nbci 2014. Accessed at http://www.ncbi.nlm.nih.gov/gene/10716, 7. Robert F Hevner, Limin Shi, Nick Justice, Yi-Ping Hsueh. Tbr1 Regulates Differentiation of the Preplate and Layer 6. Neuron. Volume 29, Issue 2, February 2001, Pages 353–366 http://www.sciencedirect.com/science/article/pii/S0896627301002112, 8. The human reelin gene: Transcription factors (+), repressors (−) and the methylation switch (+/−) in schizophrenia. Dennis R. Grayson, et al. Pharmacology & Therapeutics 111 (2006) 272–286. Accessed at http://champagnelab.psych.columbia.edu/docs/marija4.pdf, 9. Katsuyama, Yu. Terashima, Toshio. “Developmental anatomy of reeler mutant mouse.” Development, Growth, & Differentiation. 51.3 (2009): 271-286. Web. 24 April. 2014. 10. Badea, Alexandra. et. al. “Developmental anatomy of reeler mutant mouse.” NeuroImage. 34.4 (2007): 1363-1374. Web. 24 April. 2014. 11. Fatemi, S. H. “Reelin mutations in mouse and man: from reeler mouse to schizophrenia, mood disorders, autism and lissencephaly.” Molecular Psychiatry. 6.2 (2001): 129-133. Web. 24 April. 2014. 12. The Jackson Laboratory http://www.jax.org/, 13. Song, S., Liu, L., Edwards, S., & Wu, S. (2012). Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. PNAS, 109(37), 14942-14947. Retrieved from http://www.pnas.org/content/109/37/14942.long, 14. RELN reelin [ homo sapiens (human) ] . (2014, April 21). Retrieved from http://www.ncbi.nlm.nih.gov/gene/5649, 15. Rice, G. DNA Extraction. Montana State University, Microbial Life Educational Resources. Carleton.edu 14 December 2013, 16. Mortlock, D., Nelson, M., Innis, J., 2014. An efficient method for isolating putative promoters and 5’ - transcribed sequences from large genomic clones. Genome Research 1996, 327, 17. The immunogenicity of dendritic cell-derived exosomes. Quah BJ1, O'Neill HC. Blood Cells Mol Dis. 2005 Sep-Oct;35(2):94-110. Accessed at http://www.ncbi.nlm.nih.gov/pubmed/15975838., 18. Purification, Characterization and Biological Significance of Tumor-derived Exosomes. Kenichiro Koga, et al. Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan. ANTICANCER RESEARCH 25: 3703-3708 (2005). http://ar.iiarjournals.org/content/25/6A/3703.full.pdf, 19. Primers/Oligos, Cloning and Gene Synthesis, www.lifetechnologies.com, 20. PCR: Introduction. (n.d.). NCBI. Retrieved April 22, 2014, from http://www.ncbi.nlm.nih.gov/genome/probe/doc/TechPCR.shtml, 21. Han, Y., Chen, L., Guan, L., He, S., 2014. Inverse PCR-Based method for isolating novel SINEs from genome. Molecular Biotechnology 56, 296–304. doi:10.1007/s12033-013-9708-y, 22. Lodish H, Berk A, Zipursky SL, et al. Molecular Cell Biology. 4th edition. New York: W. H. Freeman; 2000. Section 7.1, DNA Cloning with Plasmid Vectors. Available from: http://www.ncbi.nlm.nih.gov/books/NBK21498, 23. DNA ligation. (n.d.). Retrieved from https://www.addgene.org/plasmid_protocols/DNA_ligation/, 24. Nallamsetty, S., Waugh, D., 2007. A generic protocol for the expression and purification of recombinant proteins in Escheria coli using a combinatorial His6-matose binding protein fusion tag. Nature Protocols 2, 383–391. doi:10.1038/nprot.2007.50, 25. Cabrita, L., Dai, W., Bottomley, S., 2006. A family of E. coli expression vectors for laboratory scale and high throughput soluble protein production. BMC Biotechnol.6, 12. doi:10.1186/1472-6750-6-12, 26. Hartley, J., Temple, G., Brasch, M., 2000. DNA cloning using in vitro site-specific recombination. Genome Research 10, 1788–1795., 27. Griffiths AJF, Gelbart WM, Miller JH, et al. Modern Genetic Analysis. New York: W. H.Freeman; 1999. Bacterial Transformation. 28. Delivery of siRNA to the mouse brain by systemic injection of targeted exosomes. Alvarez-Erviti L1, Seow Y, Yin H, Betts C, Lakhal S, Wood MJ. Nat Biotechnol. 2011 Apr;29(4):341-5. doi: 10.1038/nbt.1807. Epub 2011 Mar 20. http://www.ncbi.nlm.nih.gov/pubmed/21423189, 29. NIH awards University of Chicago $1.5 million to study novel therapy for multiple sclerosis. Kevin Jiang. UChicagoNews. SEPTEMBER 18, 2013.http://news.uchicago.edu/article/2013/09/18/nih-awards-university-chicago-15-million-study-novel-therapy-multiple-sclerosis, 30. Soverchia, L., Ubaldi, M., Leonardi‐Essmann, F., Ciccocioppo, R., &Hardiman, G. (2005).Microarrays‐The Challenge of Preparing Brain Tissue Samples. Addiction biology, 10(1), 5-13. 31. Hegde, P., Qi, R., Abernathy, K., Gay, C., Dharap, S., Gaspard, R., ... &Quackenbush, J. (2000).A concise guide to cDNA microarray analysis. Biotechniques, 29(3), 548-563. 32. Matsuki, T., Hori, G., &Furuichi, T. (2005).Gene expression profiling during the embryonic development of mouse brain using an oligonucleotide-based microarray system. Molecular brain research, 136(1), 231-254. 33. Sato, N., Fukushima, N., Chang, R., Matsubayashi, H., &Goggins, M. (2006). Differential and Epigenetic Gene Expression Profiling Identifies Frequent Disruption of the RELN Pathway in Pancreatic Cancers. Gastroenterology, 130(2), 548-565, 34. pUC19 vector. (n.d.). Retrieved from http://www2.le.ac.uk/departments/genetics/genie/images/project-related-images/pUC19.jpg/view, 35. American Psychological Association. (2012, February 24).Guidelines for ethical conduct in the care and use of nonhuman animals in research . Retrieved from https://www.apa.org/science/leadership/care/guidelines.aspx?item=1, 36. "Trials of War Criminals before the Nuremberg Military Tribunals under Control Council Law No. 10", Vol. 2, pp. 181-182. Washington, D.C.: U.S. Government Printing Office, 1949. Accessed at http://www.hhs.gov/ohrp/archive/nurcode.html , 37. Department of Health, Education, and Welfare. The National Commission for the Protection of Human Subjects of Biomedical and Behavioral Research Sess. (1979) Washington, D.C. IMAGE CREDITS: Experimental design images retrieved from: http://pegstookey.legacycentered.com/files/2013/03/Brain-clipart.png, http://pixabay.com/p-296581/?no_redirect, http://sweetclipart.com/multisite/sweetclipart/files/dna_black.png, http://upload.wikimedia.org/wikipedia/commons/0/07/Protein_HBZ_PDB_1jeb.png, http://www.clker.com/cliparts/B/o/K/L/E/9/cho-cell-petri-dish2-hi.png, http://www.ipharmd.net/images/blue_filled_syringe.png, http://anniehalliday.com/biopics/composite/microarray.jpg. Phylogenetic Tree adapted Future research may investigate alternative human therapies. •Alternative genes and gene products •Alternative brain regions •Environmental triggers •Extension of research towards effects of RELN gene •Differentiation of neurons •Neurogenesis in the hippocampus •Effects on other neuropathologies •Additional research on animals more closely related to humans (pigs, monkeys, etc.) •Eventual research with human patients 36,37 •Informed consent and required ability to stop research •Avoid unnecessary harm and maximize benefits Will increasing RELN transcription have a therapeutic benefit? •Poor neuronal orientation is only one aspect of complex disease pathology •Possible procedural errors: •Isolation of Tbr1, amplification during PCR, plasmid recombination, or transformation of E. coli •DCDE may not be suitable carrier for Tbox brain 1 due to unforeseen size or other molecular qualities •Problematic brain tissue culturing or removal •Failure to target correct RELN paralog may complicate schizophrenic pathology Experimental Design References BIOL 2002 – Section 1; Team 10; Spring 2014 Tbr1 Gene 11,412 bp

Transcript of BioPosterPP

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Treating Schizophrenia: Keepin’ it ReelinBradley Van Rooy, Jessica Dewey, Tracy Dinh, Kate Geschwind, Willie Meder, Colleen Smith, Jonah Widmer, Kristen Woodhouse

Schizophrenia: A Chronic Psychotic Syndrome. 1,2

•Patients falsely interpret reality• Severely debilitating symptoms include delusions, hallucinations,

and impaired social and communicative functioning•2.4 million patients in America each year

May be caused by decreased expression of RELN gene 3,4,5

•RELN protein product, reelin, causes appropriate neuronal positioning•50% less reelin in schizophrenic patients•Due to hypermethylation of RELN gene

RELN Transcription Factor: T-box brain 1 is the protein product of Tbr16,7,8

• Less Tbr1 expression means less reelin•More Tbr1 means more reelin

Reeler mice (Mus musculus) as a model organism for schizophrenia9,10,11,12

•Deleterious RELN gene disrupts reelin signaling pathway•Heterozygous mice have 50% less reelin

Our experiment seeks to increase RELN transcription in reeler mice•Deliver transcription activator to mouse brains using exosome

treatment• The goal is to increase RELN expression, improve neural connectivity,

and achieve therapeutic alleviation of schizophrenic symptoms

RELN: An ancestral character for the Eutheria clade.13 • Maximum parsimony

phylogenetic tree shows evolutionary relationship between humans, mice

• Orthologs of Homo sapiens RELN have been located in 86 mammals.

• H. sapiens RELN is conserved in 9 of these mammals, including Mus musculus.14

• Research methods applied in M. musculus may eventually be applied to orthologous species.

• Large number of RELN paralogs exist in every species that carries RELN.

pUC19 Plasmid contains all necessary coding regions. 21,34

• rep region causes replication.• bla region (Apr) confers ampicillin resistance as screening system.• lacZ gene, its promoter, lac repressor binding site as reporter system.• Tbr1 inserted at multiple cloning site.

Animal research must be ethical. 35

• Clear purpose of benefit and justified as a “last resort” measure• Animal welfare maintained• Follow IACUC guidelines for animal treatment as per www.iacuc.org• Humane surgical procedures; multiple surgeries approved

1. Schizophrenia. (2014, January 24). Diseases and Conditions: Schizophrenia. Retrieved April 20, 2014, from http://www.mayoclinic.org/diseases-conditions/schizophrenia/basics/symptoms/con-20021077, 2. The Numbers Count: Mental Disorders in America. (n.d.). NIMH RSS. Retrieved April 20, 2014, from http://www.nimh.nih.gov/health/publications/the-numbers-count-mental-disorders-in-america/index.shtml#Schizophrenia, 3. Balthazart, J., Voigt, C., Boseret, G., & Ball, G. (2008). Expression of reelin, its receptors and its intracellular signaling protein, disabled-1 (dab-1) in the canary brain: Relationships with the song control system. Journal of Neuroscience, 153(4), 944-962. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836269, 4. Abdolmaleky, H. M., Cheng, K. H., Russo, A., Smith, C. L., Faraone, S. V., Wilcox, M., ... &Tsuang, M. T. (2005). Hypermethylation of the reelin (RELN) promoter in the brain of schizophrenic patients: a preliminary report. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 134(1), 60-66. 5. Costa, E., Chen, Y., Davis, J., Dong, E., Noh, J. S., Tremolizzo, L., ... &Guidotti, A. (2002).REELIN and Schizophrenia. Molecular interventions, 2(1), 47. 6. TBR1 T-box, brain, 1 .Nbci 2014. Accessed at http://www.ncbi.nlm.nih.gov/gene/10716, 7. Robert F Hevner, Limin Shi, Nick Justice, Yi-Ping Hsueh. Tbr1 Regulates Differentiation of the Preplate and Layer 6. Neuron. Volume 29, Issue 2, February 2001, Pages 353–366 http://www.sciencedirect.com/science/article/pii/S0896627301002112, 8. The human reelin gene: Transcription factors (+), repressors (−) and the methylation switch (+/−) in schizophrenia. Dennis R. Grayson, et al. Pharmacology & Therapeutics 111 (2006) 272–286. Accessed at http://champagnelab.psych.columbia.edu/docs/marija4.pdf, 9. Katsuyama, Yu. Terashima, Toshio. “Developmental anatomy of reeler mutant mouse.” Development, Growth, & Differentiation. 51.3 (2009): 271-286. Web. 24 April. 2014. 10. Badea, Alexandra. et. al. “Developmental anatomy of reeler mutant mouse.” NeuroImage. 34.4 (2007): 1363-1374. Web. 24 April. 2014. 11. Fatemi, S. H. “Reelin mutations in mouse and man: from reeler mouse to schizophrenia, mood disorders, autism and lissencephaly.” Molecular Psychiatry. 6.2 (2001): 129-133. Web. 24 April. 2014. 12. The Jackson Laboratory http://www.jax.org/, 13. Song, S., Liu, L., Edwards, S., & Wu, S. (2012). Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. PNAS, 109(37), 14942-14947. Retrieved from http://www.pnas.org/content/109/37/14942.long, 14. RELN reelin [ homo sapiens (human) ]. (2014, April 21). Retrieved from http://www.ncbi.nlm.nih.gov/gene/5649, 15. Rice, G. DNA Extraction. Montana State University, Microbial Life Educational Resources. Carleton.edu 14 December 2013, 16. Mortlock, D., Nelson, M., Innis, J., 2014. An efficient method for isolating putative promoters and 5’ -transcribed sequences from large genomic clones. Genome Research 1996, 327, 17. The immunogenicity of dendritic cell-derived exosomes. Quah BJ1, O'Neill HC. Blood Cells Mol Dis. 2005 Sep-Oct;35(2):94-110. Accessed at http://www.ncbi.nlm.nih.gov/pubmed/15975838., 18. Purification, Characterization and Biological Significance of Tumor-derived Exosomes. Kenichiro Koga, et al. Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan. ANTICANCER RESEARCH 25: 3703-3708 (2005). http://ar.iiarjournals.org/content/25/6A/3703.full.pdf, 19. Primers/Oligos, Cloning and Gene Synthesis, www.lifetechnologies.com, 20. PCR: Introduction. (n.d.). NCBI. Retrieved April 22, 2014, from http://www.ncbi.nlm.nih.gov/genome/probe/doc/TechPCR.shtml, 21. Han, Y., Chen, L., Guan, L., He, S., 2014. Inverse PCR-Based method for isolating novel SINEs from genome. Molecular Biotechnology 56, 296–304. doi:10.1007/s12033-013-9708-y, 22. Lodish H, Berk A, Zipursky SL, et al. Molecular Cell Biology. 4th edition. New York: W. H. Freeman; 2000. Section 7.1, DNA Cloning with Plasmid Vectors. Available from: http://www.ncbi.nlm.nih.gov/books/NBK21498, 23. DNA ligation. (n.d.). Retrieved from https://www.addgene.org/plasmid_protocols/DNA_ligation/, 24. Nallamsetty, S., Waugh, D., 2007. A generic protocol for the expression and purification of recombinant proteins in Escheria coli using a combinatorial His6-matose binding protein fusion tag. Nature Protocols 2, 383–391. doi:10.1038/nprot.2007.50, 25. Cabrita, L., Dai, W., Bottomley, S., 2006. A family of E. coli expression vectors for laboratory scale and high throughput soluble protein production. BMC Biotechnol.6, 12. doi:10.1186/1472-6750-6-12, 26. Hartley, J., Temple, G., Brasch, M., 2000. DNA cloning using in vitro site-specific recombination. Genome Research 10, 1788–1795., 27. Griffiths AJF, Gelbart WM, Miller JH, et al. Modern Genetic Analysis. New York: W. H.Freeman; 1999. Bacterial Transformation. 28. Delivery of siRNA to the mouse brain by systemic injection of targeted exosomes. Alvarez-Erviti L1, Seow Y, Yin H, Betts C, Lakhal S, Wood MJ. Nat Biotechnol. 2011 Apr;29(4):341-5. doi: 10.1038/nbt.1807. Epub 2011 Mar 20. http://www.ncbi.nlm.nih.gov/pubmed/21423189, 29. NIH awards University of Chicago $1.5 million to study novel therapy for multiple sclerosis. Kevin Jiang. UChicagoNews. SEPTEMBER 18, 2013.http://news.uchicago.edu/article/2013/09/18/nih-awards-university-chicago-15-million-study-novel-therapy-multiple-sclerosis, 30. Soverchia, L., Ubaldi, M., Leonardi Essmann, F., Ciccocioppo, R., &Hardiman, G. (2005).Microarrays The Challenge of Preparing Brain Tissue Samples. ‐ ‐ Addiction biology, 10(1), 5-13. 31. Hegde, P., Qi, R., Abernathy, K., Gay, C., Dharap, S., Gaspard, R., ... &Quackenbush, J. (2000).A concise guide to cDNA microarray analysis. Biotechniques, 29(3), 548-563. 32. Matsuki, T., Hori, G., &Furuichi, T. (2005).Gene expression profiling during the embryonic development of mouse brain using an oligonucleotide-based microarray system. Molecular brain research, 136(1), 231-254. 33. Sato, N., Fukushima, N., Chang, R., Matsubayashi, H., &Goggins, M. (2006). Differential and Epigenetic Gene Expression Profiling Identifies Frequent Disruption of the RELN Pathway in Pancreatic Cancers. Gastroenterology, 130(2), 548-565, 34. pUC19 vector. (n.d.). Retrieved from http://www2.le.ac.uk/departments/genetics/genie/images/project-related-images/pUC19.jpg/view, 35. American Psychological Association. (2012, February 24).Guidelines for ethical conduct in the care and use of nonhuman animals in research. Retrieved from https://www.apa.org/science/leadership/care/guidelines.aspx?item=1, 36. "Trials of War Criminals before the Nuremberg Military Tribunals under Control Council Law No. 10", Vol. 2, pp. 181-182. Washington, D.C.: U.S. Government Printing Office, 1949. Accessed at http://www.hhs.gov/ohrp/archive/nurcode.html , 37. Department of Health, Education, and Welfare. The National Commission for the Protection of Human Subjects of Biomedical and Behavioral Research Sess. (1979) Washington, D.C. IMAGE CREDITS: Experimental design images retrieved from: http://pegstookey.legacycentered.com/files/2013/03/Brain-clipart.png, http://pixabay.com/p-296581/?no_redirect, http://sweetclipart.com/multisite/sweetclipart/files/dna_black.png, http://upload.wikimedia.org/wikipedia/commons/0/07/Protein_HBZ_PDB_1jeb.png, http://www.clker.com/cliparts/B/o/K/L/E/9/cho-cell-petri-dish2-hi.png, http://www.ipharmd.net/images/blue_filled_syringe.png, http://anniehalliday.com/biopics/composite/microarray.jpg. Phylogenetic Tree adapted from http://www2.le.ac.uk/departments/genetics/genie/images/project-related-images/pUC19.jpg/image_preview. Plasmid image adapted from http://filebox.vt.edu/users/chagedor/biol_4684/Methods/transformed.gif. Tbr1 gene image adapted from http://www.ncbi.nlm.nih.gov/gene/10716.

Future research may investigate alternative human therapies.

•Alternative genes and gene products•Alternative brain regions•Environmental triggers•Extension of research towards effects of RELN gene

• Differentiation of neurons• Neurogenesis in the hippocampus• Effects on other neuropathologies

•Additional research on animals more closely related to humans (pigs, monkeys, etc.)•Eventual research with human patients36,37

• Informed consent and required ability to stop research• Avoid unnecessary harm and maximize benefits

Will increasing RELN transcription have a therapeutic benefit?

•Poor neuronal orientation is only one aspect of complex disease pathology•Possible procedural errors:

• Isolation of Tbr1, amplification during PCR, plasmid recombination, or transformation of E. coli• DCDE may not be suitable carrier for Tbox brain 1 due to

unforeseen size or other molecular qualities• Problematic brain tissue culturing or removal

•Failure to target correct RELN paralog may complicate schizophrenic pathology

Experimental Design

References

BIOL 2002 – Section 1; Team 10; Spring 2014

Tbr1 Gene11,412 bp