BioPathwise 2.0 A System for Pathway-Centric Collaborative Research.

BioPathwise 2.0BioPathwise 2.0A System for Pathway-Centric

Collaborative Research

2001-2006 The BioAnalytics Group LLC. All Rights Reserved

OutlineOutline

The BioAnalytics Group

The Problem and Potential of Collaboration

BioPathwise 2.0


The BioAnalytics GroupThe BioAnalytics Group

Offers software-based products and services to biomedical researchers.

Services include custom software development, modeling research, data analysis, and training.

Products include image analysis, optimization and pathway analysis software.

A participant in the Program for Immune Modeling & Experimentation (PRIME), funded by the NIAID.


Multidisciplinary CollaborationMultidisciplinary Collaboration

Biological Researchers

Computational Biologists

Bioinformaticians

How do I communicate my results to other researchers and make use of their hard work in my research?


BioPathwise 2.0BioPathwise 2.0

A computer-based solution designed to organize, view, analyze and share data and knowledge in the form of pathways.

Building & Viewing

Pathways

Simulation, Data Analysis &

Visualization

Data & Pathway Repository


Building Pathways with Building Pathways with BioPathwiseBioPathwise

Import pathways

Pathways constructed by querying Reaction Database

Constructing networks from data

Enhancing existing pathways with your knowledge


The BioPathwise RepositoryThe BioPathwise Repository

Searchable Collection of Pathways

Molecule PagesDynamically formatted Reports

The Rest of Biology

Access to Current Literature

Reaction Database


Annotating PathwaysAnnotating Pathways

Text

Structured Annotations

Attached Documents, Images, and Data

Hyperlinks to any web resource


Pathway-CentricPathway-CentricData VisualizationData Visualization

Importing Data

Visualization of Categorical and Time Series Data


Pre-kinetic Pathway AnalysisPre-kinetic Pathway Analysis

Network analysis to highlightCritical points

Complementary Paths

Shortest Paths


SimulationSimulation

Hypothesis testing

Experimental Design and Automation

Parameter Estimation and Sensitivity

Pathway-Centric Visualization


CollaborationCollaboration

Share Models using the Repository

Export Models to Third-Party Formats

Publish Models to the Web

Export Publication Quality Graphics


BioPathwise BioPathwise Programming InterfaceProgramming Interface

Interfacing with 3rd party products

Algorithm Developers

Application Developers


Availability and PricingAvailability and Pricing

BioPathwise 2.0 Available Mid-July ’06

Pricing:Desktop Application

$3000 commercial

$600 academic

$300 per class for classroom use

Server (includes 5 desktop licenses)Prices start at $25k commercial

Includes hardware, configuration, training


AcknowledgmentsAcknowledgments

Physiome Sciences Team (PathwayPrism v. 3.0)Kam-Chuen Jim, Guanming Wu, Jinpeng Xing, Yi Ge, Jonathan M. Shuali, Haoyu Yu, Robert Tjon, Zhuang Zuo, Jose Fernandez, Ninu Mehta, Stephen Lin, Andrew LeBeau, Fred Livingston, Jian Wang, Ned Haubein, Scott Lett, Haoyu Yu, Guanming Wu, Abram Goykhman, Brett Bu Sha, Katarzyna Stanczewska

BioAnalytics Team (BioPathwise v. 1.0, 2.0)Ned Haubein, Rashmi Gupta, Steven Alfisi

PRIME Team (Hours of use, plenty of feedback)Mount Sinai School of Medicine

Ohio State

Princeton University

NIAID

BioPathwise 2.0 A System for Pathway-Centric Collaborative Research.

Documents

Transcript of BioPathwise 2.0 A System for Pathway-Centric Collaborative Research.