BIOMED Engineering Experimental proposal for growth E.coli

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EXPERIMENTAL PROPOSAL CREATING AND TESTING A MATHEMATIC MODEL TO PREDICT GROWTH CURVES OF E. COLI AFTER EXPOSURE TO ELEVATED TEMPERATURES Team 3 March 31, 2014
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Transcript of BIOMED Engineering Experimental proposal for growth E.coli

Page 1: BIOMED Engineering Experimental proposal for growth E.coli

EXPERIMENTAL PROPOSAL

CREATING AND TESTING A MATHEMATIC MODEL TO PREDICT GROWTH CURVES OF

E. COLI AFTER EXPOSURE TO ELEVATED TEMPERATURES

Team 3March 31, 2014

Page 2: BIOMED Engineering Experimental proposal for growth E.coli

Problem statement The purpose of this study is to

create and validate a mathematical model of a growth curve of bacterial behavior after thermal shock at various temperatures

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Facts about E. Coli Escherichia coli (E. coli) is a type of

bacteria commonly found in the intestinal tracts of large mammals

The growth and decay rate are also affected by: Temperature Initial concentration of bacteria Presence of antibacterial substances pH levels Oxidation reduction potential

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Facts about E. Coli In our experiment, we demonstrate how

the growth curve is affected by thermal shock

E. Coli grows well between 21oC to 50oC with an optimum at about 37oC .

E. coli can divide every 20 minutes At temperatures of 0°C (32°F) E. coli

are unable to divide, keeping the population stable

E. coli is killed above 70°C (160°F)

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Growth Curve of E. coli

Lag phase: the population remains temporarily unchanged

Log phase: the cells divide at a constant rate depending on temperature conditions

Stationary phase: the population growth is limited by temperature Death phase: the number of cells decreases

The E.coli Growth Curve

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Hypothesis

The growth curves of colonies shocked at temperatures (45-650C) demonstrate longer lag times but accelerated exponential growth when compared to a control grown at 37°C

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Mathematic model to predict growth curve

WE WILL APPLY THIS EQUATION TO CREATE THE GROWTH CURVE MODEL[17]

(1- NMIN /N)C

Where: (Nmin) = minimum

population of E.coli (Nmax) = maximum

population of E.coli r = Temperature-

dependent constant C= Adjustment factor N= number colonies at

time t

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Experimental Design

Materials and EquipmentSpectrophotometer and cuvettesInoculation Loop 1000μL and 100μL micropipettesBeakers and hot plates Incubator (37oC) Reagents:

Distilled water and deionized water Culture of E.Coli Nutrient broth as a food source

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Experimental Setup

Thermal Shock: Initially raise bacterial environment

temperature to 450C, 550C, 600C, and 700C Growth continued at 370C after thermal shock Control group grown at 370C

Measure growth Create a concentration ladder Measure cloudiness in a test tube as the

number of cells increase (turbidity) using a spectrophotometer

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Data Analysis

Mintab and MATLAB software Plot mathematical growth curve and

experimental growth curves Regression analysis

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References[1] J. E. Bailey, "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities," Institute of Biotechnology, 1998, pp. 8-20. [2] J. Baranyi, "A non-autonomous differential equation to model bacterial growth," T. A. Roberts, ed., Food Microbiology, 1993, pp. 43-59. [3] J. Baranyi, "A Review Paper: A Dynamic Approach to Predicting Bacterial Growth in Food," T. A. Roberts, ed., International Journal of Food Microbiology, 1994, pp. 227-294. [4] J. Baranyi, "Mathematics of predictive food microbiology," T. A. Roberts, ed., Food Microbiology, 1995, pp. 199-218. [5] M. Berney, H. U. Weilenmann, J. Ihssen et al., “Specific growth rate determines the sensitivity of Escherichia coli to thermal, UVA, and solar disinfection,” Applied and Environmental Microbiology, vol. 72, no. 4, pp. 2586-2593, Apr, 2006. [6] M. P. Doyle, “ESCHERICHIA-COLI O157 - H7 AND ITS SIGNIFICANCE IN FOODS,” International Journal of Food Microbiology, vol. 12, no. 4, pp. 289-302, Apr, 1991. [7] J. S. Edwards, "In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data," R. U. Ibarra, ed., Nature, 2001. [8] H. Fujikawa, "A new logistic model for Escherichia coli growth at constant and dynamic temperatures,“ Morozumi, Satoshi A. Kai, ed., Food Microbiology, 2004, pp. 501-509. [9] R. Ibarra, "Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth," J. S. Edwards, ed., Nature, 2002. [10] A. G. Marr, "Growth Rate of Escherichia Coli," 2, American Society for Microbiology, 1991. [11] J. M. Monk, P. Charusanti, R. K. Aziz et al., “Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments,” Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 50, pp. 20338-20343, Dec, 2013. [12] D.-H. Oh, "A New Secondary Model Developed for the Growth Rate of Escherichia coli O157:H7 in Broth," T. Ding, ed., Indian Journal of Microbiology, 2012, pp. 99-101. [13] M. O. Olanya, "Effects of temperatures and storage time on resting populations of Escherichia coli O157:H7 and Pseudomonas fluorescens in vitro," D. O. Ukuku, ed., Food Control, 2014, pp. 128-134[14] O. Rodriguez-Gonzalez, "Escherichia coli<font class=""> O157:H7 subjected to pulsed electric fields in milk," M. Walkling-Ribeiro, ed., International Dairy Journal, 2011, pp. 953-962. [15] J. Samelis, and J. N. Sofos, “Role of glucose in enhancing the temperature-dependent growth inhibition of Escherichia coli O157 : H7 ATCC 43895 by a Pseudomonas sp,” Applied and Environmental Microbiology, vol. 68, no. 5, pp. 2600-2604, May, 2002. [16] L. J. Tranvik, and M. G. Hofle, “BACTERIAL-GROWTH IN MIXED CULTURES ON DISSOLVED ORGANIC-CARBON FROM HUMIC AND CLEAR WATERS,”Applied and Environmental Microbiology, vol. 53, no. 3, pp. 482-488, Mar, 1987. [17] G. D. Wang, "Survival and growth of Escherichia coli O157:H7 in unpasteurized and pasteurized milk.," T. Zhao, ed., Journal of Food Protection, 1997, pp. 610-613. .

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QUESTIONS ?