Biological Entity, a Bioschemas specification for Life ... · Bioschemas is a community initiative...
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Data releases, e.g., Biological Entity, a Bioschemas specification for Life Sciences Leyla Garcia 1 , Bioschemas community 1 EMBL-European Bioinformatics Institute, Cambridge, UK Bioschemas is a community initiative built on top of schema.org, aiming to improve data discoverability and interoperability in Life Sciences. In order to do so, Bioschemas provides specifications targeting biological data repositories and datasets, beacons, samples, laboratory protocols, phenotypes and proteins, among others. Bioschemas is still in an early stage so it is not yet officially included in schema.org; its inclusion is expected for early 2018. Availability: http://bioschemas.org/ Contributing with Life Sciences schemas Testing adoption in Life Sciences key resources Evaluating pros and cons Implementing practical examples Bioschemas Our approach Findability Easily finding proteins, samples, phenotypes and so on resources on the web Summarization Getting a quick summary with information from different resources as well as links to them Accessibility Gathering structured information from different life sciences resources without dealing with multiple formats ScientificEntity Thing Dataset DataCatalog BiologicalEntity LabProtocol Data providers, e.g., CreativeWork includedInDataCatalog isMentionedIn reagent • UniProtKB 2017_07 • InterPro 64.0 • WTCCC1 project Hypertension (HT) samples Funding BiologicalEntity, a generic and adaptable wrapper for Life Sciences data EBI is an outstation of the European Molecular Biology Laboratory [email protected], EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK This work has been partly funded by the European Molecular Biology Laboratory EMBL and Elixir which is partly funded by the European Commission within the Research Infrastructures programme of Horizon 2020 Contact
Transcript of Biological Entity, a Bioschemas specification for Life ... · Bioschemas is a community initiative...
Data releases, e.g.,
Biological Entity, a Bioschemas specification for Life SciencesLeyla Garcia1, Bioschemas community
1EMBL-European Bioinformatics Institute, Cambridge, UK
Bioschemas is a community initiative built on top ofschema.org, aiming to improve data discoverability andinteroperability in Life Sciences. In order to do so, Bioschemasprovides specifications targeting biological data repositoriesand datasets, beacons, samples, laboratory protocols,phenotypes and proteins, among others. Bioschemas is still inan early stage so it is not yet officially included in schema.org;its inclusion is expected for early 2018.
Availability: http://bioschemas.org/
Contributing with Life Sciences schemas
Testing adoption in Life Sciences key resources
Evaluating pros and cons
Implementing practical examples
Bioschemas Our approach
Findability
Easily finding proteins, samples, phenotypes and so on resources on the web
Summarization
Getting a quick summary with information from different resources as well as links to them
Accessibility
Gathering structured information from different life sciences resources without dealing with multiple formats
ScientificEntity
Thing
Dataset
DataCatalog
BiologicalEntityLabProtocol
Data providers, e.g.,
CreativeWork
includedInDataCatalogisMentionedInreagent• UniProtKB 2017_07• InterPro 64.0• WTCCC1 project
Hypertension (HT) samples
Funding
BiologicalEntity, a generic and adaptable wrapper for Life Sciences data
EBI is an outstation of the
European Molecular Biology [email protected], EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK
This work has been partly funded by the European Molecular Biology Laboratory EMBL and Elixir which is partly funded by the European Commission within the Research Infrastructures programme of Horizon 2020
Contact
