Biohackers Seattle June 2016 Microbiome Hacking
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Transcript of Biohackers Seattle June 2016 Microbiome Hacking
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Hacking My GutMicrobiome
Richard SpragueJune 4, 2016
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I’m not a doctor• Disclaimer• The following presentation and discussion is not intended to diagnose, treat, cure, or prevent any
disease. • The material in my talk is provided for informational purposes only and is not medical advice. • Always consult your physician before beginning any diet or exercise program.
• uBiome• uBiome sampling kits and data is designed to be a tool for personal research - not a diagnostic
tool. uBiome cannot predict the implications of your results for your long-term health, nor will you be able to use your results to diagnose, treat, cure, or prevent any medical condition.
• uBiome offers the opportunity to gain a better understanding of the human microbiome and see the bacteria in your own samples.
• uBiome’s platform enables you to visualize your results, as they compare to other participant groups and your own samples over time.
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YouWeight
Human Non-Human
Cells
Human Non-Human
Genes
Human Non-Human
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YouWeight
Human Non-Human
Cells
Human Non-Human
Genes
Human Non-Human
3 pounds
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Find which microbes you have
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{ "ubiome_bacteriacounts": [ { "count": 611672, "count_norm": 1008824, "parent": 0, "tax_rank": "root", "tax_color": null, "avg": null, "taxon": 1, "tax_name": "root" },
{ "count": 606322, "count_norm": 1000000, "parent": 131567, "tax_rank": "superkingdom", "tax_color": null, "avg": null, "taxon": 2, "tax_name": "Bacteria“},
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{ "ubiome_bacteriacounts": [ { "count": 611672, "count_norm": 1008824, "parent": 0, "tax_rank": "root", "tax_color": null, "avg": null, "taxon": 1, "tax_name": "root" },
tax_name tax_rank May-14 Jun-14 Oct-14 Jan-15 Feb-15 21-Apr 28-Apr Jun-15 Aug-15
Firmicutes phylum 62.288% 46.338% 58.450% 71.836% 67.930% 79.980% 68.885% 67.761% 63.708%
Bacteroidetes phylum 25.573% 29.927% 27.485% 16.424% 14.900% 9.684% 13.602% 21.760% 18.289%
Proteobacteria phylum 2.976% 15.625% 0.359% 0.982% 7.514% 1.584% 3.853% 2.111% 1.280%Actinobacteria phylum 1.097% 0.832% 6.562% 7.616% 0.771% 1.041% 0.382% 1.098% 0.967%Tenericutes phylum 0.636% 0.249% 0.043% 0.065% 0.071% 0.098% 0.647% 0.530% 0.003%Verrucomicrobia phylum 3.135% 1.965% 0.770% 0.664% 0.013% 1.155% 0.957% 0.236% 4.418%Euryarchaeota phylum 0.000% 0.000% 0.000% 0.000% 0.000% 2.425% 0.227% 0.225% 0.637%Lentisphaerae phylum 0.170% 0.000% 0.118% 0.017% 0.009% 0.018% 0.024% 0.107% 0.108%Cyanobacteria phylum 0.001% 0.000% 0.003% 0.005% 0.031% 0.005% 0.000% 0.096% 0.012%
{ "count": 606322, "count_norm": 1000000, "parent": 131567, "tax_rank": "superkingdom", "tax_color": null, "avg": null, "taxon": 2, "tax_name": "Bacteria“},
May-14
Jun-14
Oct-14
Jan-15
Feb-15
21-Apr
28-Apr
Jun-15
Aug-15
0%20%40%60%80%
100%Phylum Composition
EuryarchaeotaVerrucomicrobiaTenericutesActinobacteriaProteobacteriaBacteroidetesFirmicutes
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Making science news personal
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Bacteroides Plebeius
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Hacking my microbiome
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1 2 3 4 50
10000
20000
30000
40000
50000
60000
70000
Bifidobacterium
Sample
Coun
t (n
orm
aliz
ed)
Start Stop
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Microbiome and sleep
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ReseedingDate Calories Carbs Fat Protein
Cholesterol Sodium Sugars Fibre
15-Oct-15 2542 332 79 104 165 3339 53 48
17-Oct-15 1290 194 32 38 76 2907 58 19
18-Oct-15 0 0 0 0 0 0 0 0
19-Oct-15 0 0 0 0 0 0 0 0
20-Oct-15 2644 292 119 102 557 3266 61 41
21-Oct-15 2497 234 98 103 422 2593 89 44
22-Oct-15 2017 280 43 62 110 1577 58 29
23-Oct-15 2674 369 78 122 75 1305 49 36
24-Oct-15 2238 182 82 174 365 3123 62 30
25-Oct-15 1582 160 48 110 239 3084 38 19
26-Oct-15 1876 226 63 73 186 920 52 33
27-Oct-15 1771 173 62 97 767 1301 33 22
28-Oct-15 2190 291 88 100 252 1043 65 32
29-Oct-15 1768 161 88 90 267 1664 54 22
30-Oct-15 938 107 37 43 114 781 34 10
31-Oct-15 1637 251 42 94 223 4184 17 11
1-Nov-15 2133 198 69 100 380 1953 53 9
2-Nov-15 2142 269 76 60 306 2193 46 30
3-Nov-15 2019 300 97 70 255 2532 160 34
Cleanse
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My new friends
Abiotrophia Bacillus Catonella
Christensenella Parvimonas
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What I Learned• My gut microbiome recovers quickly• Amounts and ratios change, but not the
organisms• A few intriguing, new organisms
appeared.• It’s hard to significantly change your
microbiome