Bacteria and archea f12 (2)
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ProkaryotesProkaryotes
Or 100 Trillion Friends That You Didn’t Know You Had
The Human MicrobiomeThe Human Microbiome We are actually a giant ecosystem of We are actually a giant ecosystem of
microbes microbes Prokaryotes comprise between 1-3% of the Prokaryotes comprise between 1-3% of the
mass of a human bodymass of a human body
- up to 6lbs of a 200 lb person can be - up to 6lbs of a 200 lb person can be microbes microbes
Classification: Some Old, Classification: Some Old, Some New Some New
Biologists have typically classified living Biologists have typically classified living things into 5 large groups called kingdomsthings into 5 large groups called kingdoms
- Monera, Protista, Fungi, Plantae & Animalia- Monera, Protista, Fungi, Plantae & Animalia Then biologists discovered organisms called Then biologists discovered organisms called
Archea – they are prokaryotic organisms but Archea – they are prokaryotic organisms but aren’t bacteria.aren’t bacteria.
- What to do?- What to do?
The Challenge of ArcheaThe Challenge of Archea Archea present a problem, they Archea present a problem, they a a
are prokaryotes are prokaryotes
– – They have no nucleus or organellesThey have no nucleus or organelles
They also share traits with eukaryotesThey also share traits with eukaryotes
- similarities in DNA and synthesis - similarities in DNA and synthesis
They have traits unique to themselvesThey have traits unique to themselves
- cell membrane lipids, ability to - cell membrane lipids, ability to
survive extremely high temperaturesurvive extremely high temperature
Enter the Domain System of Enter the Domain System of ClassificationClassification
Scientists divided living things into 3 Scientists divided living things into 3 Supergroups called domains these consist Supergroups called domains these consist of Bacteria, Archea and Eukaryaof Bacteria, Archea and Eukarya
Archea can be Archea can be ExtremophilesExtremophiles
Some species of archea can be found Some species of archea can be found in environments so extreme, that in environments so extreme, that nothing else lives there- extreme nothing else lives there- extreme temps, extreme pH, extremely salty temps, extreme pH, extremely salty etc…etc…
BacteriaBacteria EarthEarth’’s oldest life forms s oldest life forms
– – between 3.5 and 3.8 billion years oldbetween 3.5 and 3.8 billion years old Most abundant life form – up to 2.5 Most abundant life form – up to 2.5
billion individual bacteria in 1 gram of billion individual bacteria in 1 gram of fertile soilfertile soil
Very adaptable – found in all of EarthVery adaptable – found in all of Earth’’s s
ecosystemsecosystems
Bacteria CharacteristicsBacteria Characteristics UnicellularUnicellular Circular DNA Circular DNA No organellesNo organelles 1/101/10thth the size of eukaryotic cells the size of eukaryotic cells Flagella-long hair-like structure used Flagella-long hair-like structure used
for movementfor movement Reproduce asexually –Binary FissionReproduce asexually –Binary Fission
Bacterial ShapesBacterial Shapes
3 main shapes3 main shapes
- coccus – sphere- coccus – sphere
- bacillus – rods- bacillus – rods
- spirillum - spiral - spirillum - spiral
Bacterial CharacteristicsBacterial Characteristics Metabolic diversity – Metabolic diversity – Bacteria can produce Bacteria can produce
energy in a variety of circumstancesenergy in a variety of circumstances
autotrophautotroph – (self-feeding) – some bacteria can – (self-feeding) – some bacteria can produce their own food produce their own food
- some use photosynthesis – get energy from - some use photosynthesis – get energy from light light
- some use chemosynthesis – get energy - some use chemosynthesis – get energy fromfrom
chemicalschemicals
Heterotroph Heterotroph - (other feeding) – many bacteria - (other feeding) – many bacteria
are unable to produce their own are unable to produce their own food and are required to eat food and are required to eat
other other things things
Bacterial Characteristics:Bacterial Characteristics: Metabolic diversity continuedMetabolic diversity continued
obligate aerobe obligate aerobe – like us these bacteria need oxygen– like us these bacteria need oxygen
obligate anaerobe obligate anaerobe - these bacteria need to be in an - these bacteria need to be in an oxygen oxygen free environment – human free environment – human gutgut
facultative anaerobe facultative anaerobe – these bacteria can live in either – these bacteria can live in either an an oxygen or oxygen free oxygen or oxygen free environmentenvironment
Bacterial StructureBacterial Structure
Cell WallCell Membrane
Pilus
chromosome
plasmid
flagellum
nucleoid
ribosomecytoplasm
capsule
Bacterial Structure: Cell Bacterial Structure: Cell WallWall
Made of Made of peptidoglycanpeptidoglycan – a combination of protein and – a combination of protein and polysaccharidespolysaccharides
Some bacteria called Some bacteria called Gram negative bacteriaGram negative bacteria have an have an additional layer of membrane that contains additional layer of membrane that contains lipopolysaccharide lipopolysaccharide
- this extra layer inhibits the uptake of antibiotics – - this extra layer inhibits the uptake of antibiotics – protectingprotecting
the bacteriathe bacteria
cellmembrane
cell wall
cellmembrane
Outer membrane
lipopolysaccharide
cell wall
Gram + vs. Gram -Gram + vs. Gram -
Absorb stain appear purple
Don’t absorb stain appear pink
The type of cell wall is used by doctors to help diagnose disease
The bacteria are stained with aspecial stain called Gram stain
Bacteria without the extra
membrane, appear purple. These are Gram positive (Gram +) bacteriaBacteria with the extra membrane appear pink. These are Gram negative ( Gram -) bacteria
Bacterial Structure Bacterial Structure continuedcontinued
PiliPili – hairlike structures usually found – hairlike structures usually found
in Gram neg. bacteria. Help thein Gram neg. bacteria. Help thebacteria stick to surfaces. bacteria stick to surfaces.
Also forms Also forms conjugation bridge conjugation bridge ChromosomeChromosome – a single loop of DNA – a single loop of DNA
that is folded on itselfthat is folded on itself
- controls the cell- controls the cell’’s functions function NucleoidNucleoid – the region of the cytoplasm – the region of the cytoplasm
where the DNA is foundwhere the DNA is found PlasmidPlasmid – an accessory loop of DNA – small contains only a – an accessory loop of DNA – small contains only a
few few genes - can be responsible for: conjugation, genes - can be responsible for: conjugation, antibiotic antibiotic resistance, unique metabolic properties – resistance, unique metabolic properties – like the ability to like the ability to use hydrocarbons use hydrocarbons
CapsuleCapsule – found outside some bacteria stores nutrients and – found outside some bacteria stores nutrients and protects protects the bacteria from changing the bacteria from changing environmental conditionsenvironmental conditions
Reproduction - Binary Reproduction - Binary FissionFission
Bacterial cells undergoing binary fissionBacterial cells undergoing binary fission
Reproduction - Binary Reproduction - Binary FissionFission
Asexual reproductionAsexual reproduction - offspring are genetically- offspring are genetically identical to parent – noidentical to parent – no new genetic combinationsnew genetic combinations - under ideal conditions- under ideal conditions can occur every 20 mincan occur every 20 min - creates large numbers- creates large numbers of bacteria in a shortof bacteria in a short timetime
Each spot represents Each spot represents
a single bacteriala single bacterial
cell that reproduced cell that reproduced
by binary fission toby binary fission to
produce millions ofproduce millions of
genetically identicalgenetically identical
cells.cells.
Genetically identical,Genetically identical,
good or bad?good or bad?
Exchanging Genetic InformationExchanging Genetic Information Bacterial cells need to be able to exchange genetic Bacterial cells need to be able to exchange genetic
information information
- creates new genetic combinations which increases the - creates new genetic combinations which increases the ability of the bacteria to surviveability of the bacteria to survive
Bacteria have 3 methods for exchanging DNABacteria have 3 methods for exchanging DNA
-Transduction-Transduction – viruses carry DNA from one bacterial – viruses carry DNA from one bacterial cell to another cell to another
-Transformation-Transformation – bacteria can absorb – bacteria can absorb ““nakednaked”” DNA DNA released by dead bacteria from released by dead bacteria from the the
environmentenvironment
- - ConjugationConjugation – two bacteria join at a conjugation – two bacteria join at a conjugation bridge, one bacteria passes on a bridge, one bacteria passes on a copy of its copy of its
plasmid or chromosomeplasmid or chromosome
Exchanging Genetic Exchanging Genetic InformationInformation
TransductionTransduction – – DNA is carried from DNA is carried from one bacteria to another by a virusone bacteria to another by a virus
Transformation: Bacteria Transformation: Bacteria absorb absorb ““nakednaked”” DNA from the DNA from the
environmentenvironment
ConjugationConjugation
Conjugation- Conjugation- one cell passes a one cell passes a copy of its plasmid or chromosome to copy of its plasmid or chromosome to anotheranother
Donor CellRecipient Cell
A special pilus formsa connection calleda conjugation bridgebetween 2 bacterialcells
Plasmid Conjugation bridge
The donor cell copies its plasmidor chromosome andpasses the copy through the conjugation bridge
Cells separate
Bacteria Play Important Bacteria Play Important Roles in Ecosystems Roles in Ecosystems Decomposers Decomposers
– – recycle dead organisms releasing their recycle dead organisms releasing their nutrients back to the environment for nutrients back to the environment for
use by other organisms – use by other organisms – SPONCHSPONCH
Without decomposers,Without decomposers,
the elements on earththe elements on earth
would have remained would have remained
locked up in dead locked up in dead organisms and life organisms and life would have ceased would have ceased
Bacterial Roles: Nitrogen Bacterial Roles: Nitrogen FixationFixation
some bacteria contain enzymes which allow them some bacteria contain enzymes which allow them to convert (or fix) nitrogen from the air into a to convert (or fix) nitrogen from the air into a useable formuseable form
- they are - they are nitrogen fixing bacterianitrogen fixing bacteria
- - Why do living things use nitrogen?Why do living things use nitrogen?
Bacterial Roles: ProducersBacterial Roles: Producers In some ecosystemsIn some ecosystems
chemosynthetic andchemosynthetic and
photosynthetic bacteriaphotosynthetic bacteria
serve as the basis ofserve as the basis of
the food chain the food chain
– – chemosynthetic bacteria in deep ocean vents chemosynthetic bacteria in deep ocean vents convert hydrogen sulfide (Hconvert hydrogen sulfide (H22S) gas into energyS) gas into energy
- - cyanobacteriacyanobacteria are photosynthetic bacteria are photosynthetic bacteria
which act as producers in many aquaticwhich act as producers in many aquatic
ecosystemsecosystems
Bacterial Roles: Bacterial Roles: Symbiotic Symbiotic BacteriaBacteriaMany bacteria live in or on other organisms Many bacteria live in or on other organisms
(including humans) and aid their host(including humans) and aid their host
- some live in the gut of herbivores helping - some live in the gut of herbivores helping to digest celluloseto digest cellulose
- bacteria in the gut of humans - bacteria in the gut of humans
aid digestion and produce aid digestion and produce
vitaminsvitamins
- bacteria on skin and in body - bacteria on skin and in body
openings help prevent infection openings help prevent infection
by harmful organismsby harmful organisms
Bacterial Roles: Bacterial Roles: Pathogenic Pathogenic BacteriaBacteria PathogensPathogens are organisms that cause disease are organisms that cause disease
- only a small portion of bacteria are pathogens- only a small portion of bacteria are pathogens
- most bacteria diseases are caused by toxins - most bacteria diseases are caused by toxins
released by the bacteriareleased by the bacteria
- these toxins:- these toxins:
- poison cells and damage tissue- poison cells and damage tissue
- interfere with cell signaling- interfere with cell signaling
- over-stimulate cells causing them to - over-stimulate cells causing them to malfunction malfunction
Pathogenic Bacteria: Pathogenic Bacteria: BiofilmsBiofilms
Some bacteria can form a Some bacteria can form a biofilmbiofilm – a – a matrix made of polysaccharidematrix made of polysaccharide
- once formed, the matrix traps other - once formed, the matrix traps other bacteriabacteria
- the biofilm protects the bacteria, making - the biofilm protects the bacteria, making it hard to kill themit hard to kill them
AntibioticsAntibiotics Antibiotics are chemicals which either kill bacteria or prevent their growth and Antibiotics are chemicals which either kill bacteria or prevent their growth and
reproductionreproduction Bacteria and other microbes produce antibiotics to reduce competition from other Bacteria and other microbes produce antibiotics to reduce competition from other
organismsorganisms Penicillin was the first to be use to fight diseasePenicillin was the first to be use to fight disease
- discovered accidently by Alexander Fleming in 1928- discovered accidently by Alexander Fleming in 1928 Two scientists Walter Florey and Ernst Chain determinedTwo scientists Walter Florey and Ernst Chain determined
how to use penicillin to how to use penicillin to
treat disease in 1939.treat disease in 1939. The discovery of The discovery of
antibiotics revolutionized antibiotics revolutionized
the treatmentthe treatment
of diseaseof disease
Antibiotic ActionAntibiotic Action Antibiotics effect bacteria, but not eukaryotic cells Antibiotics effect bacteria, but not eukaryotic cells Antibiotics attack bacteria in 5 waysAntibiotics attack bacteria in 5 ways
- some damage the cell walls or prevent new cell wall from - some damage the cell walls or prevent new cell wall from formingforming
- some damage the cell membrane- some damage the cell membrane
- some prevent protein synthesis- some prevent protein synthesis
- some prevent DNA from being copied- some prevent DNA from being copied
- some interfere with bacterial metabolism- some interfere with bacterial metabolism
Antibiotic ResistanceAntibiotic Resistance Some bacteria have developed a resistance to the Some bacteria have developed a resistance to the
effecteffect
of some antibioticsof some antibiotics
- the number of resistant bacteria is growing- the number of resistant bacteria is growing The problem is increased by overuse and misuse of The problem is increased by overuse and misuse of
antibioticsantibiotics - use of antibiotics to treat viral infections – antibiotics don- use of antibiotics to treat viral infections – antibiotics don’’t t
effect viruseseffect viruses
- the use of antibiotics in livestock (cattle, chickens, pigs)- the use of antibiotics in livestock (cattle, chickens, pigs)
antibiotics show up in the meat and milkantibiotics show up in the meat and milk
- people take the antibiotics until they feel better, but stop - people take the antibiotics until they feel better, but stop before all of the bacteria are destroyedbefore all of the bacteria are destroyed
- this kills the most susceptible bacteria, but leaves the more - this kills the most susceptible bacteria, but leaves the more resistant bacteriaresistant bacteria
Black Plague-Black Plague-YersiniaYersinia pestispestis
Syphilis--Syphilis--TreponemaTreponema pallidumpallidum/Bacterial/Bacterial
MycobacteriumMycobacterium lepraeleprae/Bacteria/Bacteria
ClostridiumClostridium perfringesperfringes/Bacteria/Bacteria
VocabularyVocabularyMicrobiome ArcheaMicrobiome Archea
autotrophautotroph pili pili
heterotroph heterotroph nucleoidnucleoid
peptidoglycanpeptidoglycan capsule capsule
plasmidplasmid conjugation bridge conjugation bridge
Gram -Gram - obligate aerobeobligate aerobe
Gram +Gram + obligate anaerobeobligate anaerobe
binary fissionbinary fission facultative anaerobefacultative anaerobe
conjugationconjugation nitrogen fixing bacterianitrogen fixing bacteria
transductiontransduction cyanobacteriacyanobacteria
transformationtransformation pathogenspathogens
biofilmbiofilm