ANSC644 Bioinformatics

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ANSC644 Bioinformatics-Da tabase Mining 1 ANSC644 Bioinformatics Carl J. Schmidt 051 Townsend Hall [email protected] http:// udgenome.ags.udel.edu/ANSC644

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ANSC644 Bioinformatics. Carl J. Schmidt 051 Townsend Hall [email protected] http://udgenome.ags.udel.edu/ANSC644. Bioinformatics. Application of computer science to aid the life scientist in understanding biological processes. Bioinformatics. - PowerPoint PPT Presentation

Transcript of ANSC644 Bioinformatics

  • ANSC644 BioinformaticsCarl J. Schmidt051 Townsend [email protected]://udgenome.ags.udel.edu/ANSC644

    ANSC644 Bioinformatics-Database Mining

  • BioinformaticsApplication of computer science to aid the life scientist in understanding biological processes.

    ANSC644 Bioinformatics-Database Mining

  • BioinformaticsApplication of computer science to aid the life scientist in understanding biological processes. Computer ScienceLife Science

    ANSC644 Bioinformatics-Database Mining

  • BioinformaticsApplication of computer science to aid the life scientist in understanding biological processes. Computer ScienceLife ScienceStatistics

    ANSC644 Bioinformatics-Database Mining

  • Objectives:Introduce web accessible bioinformatics programs

    ANSC644 Bioinformatics-Database Mining

  • Objectives:Introduce web accessible bioinformatics programs Perspective of the life scientist

    ANSC644 Bioinformatics-Database Mining

  • Objectives:Introduce web accessible bioinformatics programs Perspective of the life scientistWhat is available?

    ANSC644 Bioinformatics-Database Mining

  • Objectives:Introduce web accessible bioinformatics programs Perspective of the life scientistWhat is available?How do I use these tools?

    ANSC644 Bioinformatics-Database Mining

  • Objectives:Introduce web accessible bioinformatics programs Perspective of the life scientistWhat is available?How do I use these tools?What do the results mean?

    ANSC644 Bioinformatics-Database Mining

  • Mining Internet Biomedical Databases

    ANSC644 Bioinformatics-Database Mining

  • DatabaseA computer accessible organized source of information. Three types- differ in how data is organized.

    ANSC644 Bioinformatics-Database Mining

  • DatabaseA computer accessible organized source of information. Three types- differ in how data is organized.Flatfile- ordered collection of files, typically in a standard format.

    ANSC644 Bioinformatics-Database Mining

  • DatabaseA computer accessible organized source of information. Three types- differ in how data is organized.Flatfile- ordered collection of files, typically in a standard format.Relational Database-Information is stored in a collection of tables.

    ANSC644 Bioinformatics-Database Mining

  • DatabaseA computer accessible organized source of information. Three types- differ in how data is organized.Flatfile- ordered collection of files, typically in a standard format.Relational Database-Information is stored in a collection of tables. Object Oriented Database-Can handle complex objects, beyond tables (images, video files)

    ANSC644 Bioinformatics-Database Mining

  • DatabaseA computer accessible organized source of information. Three types- differ in how data is organized.Flatfile- ordered collection of files, typically in a standard format.Relational Database-Information is stored in a collection of tables. Object Oriented Database- Can handle complex objects beyond tables such as images, video files etc.

    ANSC644 Bioinformatics-Database Mining

  • GENESome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENESequenceSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENEPublicationsSequenceSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENEPublicationsSequenceProductPublicationsStructureSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENEPublicationsSequenceProductPublicationsStructureHomologsSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENEPublicationsSequenceProductPublicationsStructureHomologsExpression DataSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • GENEPublicationsSequenceProductPublicationsStructureHomologsExpression DataMutation DataPhenotypeSome Relationships for a Given Gene

    ANSC644 Bioinformatics-Database Mining

  • EntrezCentral Query Page for Biomedical Information.Includes:LiteratureSequences NucleotideProteinStructuresOnline Mendelian Inheritance in ManMuch more

    ANSC644 Bioinformatics-Database Mining

  • EntrezQuery interfaceEntrez Query PagePubmed - literatureNucleotide SequencesOnline Mendelian Inheritance DBs

    ANSC644 Bioinformatics-Database Mining

  • Link

    ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • Boolean operatorsThe search engine understands: AND, OR, NOTThis permits refining the search to focus on topic of interest.If no operated added PUBMED uses AND between terms.Virus infection is {Virus AND infection}

    ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • PUBMED Tutorial

    ANSC644 Bioinformatics-Database Mining

  • Pubcrawler

    ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining

  • ANSC644 Bioinformatics-Database Mining


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