Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505...
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Transcript of Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505...
![Page 1: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/1.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Annual Review
NoE No. 507505Semantic Interoperability and Data Mining in Biomedicine
WP20[SemanticMining]
![Page 2: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/2.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Outline
• From 2005 to 2006…
• Semantic Mining in Biomedicine (D15)
• Multilingual Medical Dictionary – Report on multi-lingual medical dictionary (D20.1)– Interchange format for multi-lingual dictionaries (D20.2)
• Next ?
![Page 3: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/3.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and
Swedish lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
•Catholic University of Paraná, Brazil
–Lexeme acquisition–EHR indexing and retrieval
![Page 4: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/4.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and Swedish
lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
• Enhancement of Lexicon• Joint development of lexicon
acquisition methodologies• Joint corpus acquisition• IR showcase applications
![Page 5: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/5.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 6: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/6.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and Swedish
lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
• Enhancement of Lexicon• Joint development of lexicon
acquisition methodologies• Joint corpus acquisition• IR showcase applications
![Page 7: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/7.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 8: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/8.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and Swedish
lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
• Enhancement of Lexicon• Joint development of lexicon
acquisition methodologies• Joint corpus acquisition• IR showcase applications
![Page 9: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/9.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 10: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/10.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 11: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/11.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 12: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/12.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 13: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/13.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and
Swedish lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
•Catholic University of Paraná, Brazil
–Lexeme acquisition–EHR indexing and retrieval
![Page 14: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/14.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and
Swedish lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Standardization of Corpus Interchange
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
•Catholic University of Paraná, Brazil
–Lexeme acquisition–EHR indexing and retrieval
![Page 15: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/15.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
![Page 16: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/16.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and
Swedish lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Standardization of Corpus Interchange
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
•Catholic University of Paraná, Brazil
–Lexeme acquisition–EHR indexing and retrieval
![Page 17: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/17.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Multilingual Lexicon. Goals for 2005
• MorphoEdit lexicon editor• MorphoSaurus segmenter &
indexer• Exchange of French and
Swedish lexemes
Sharing Tools and Resources
International Cooperation Fund Raising
Dissemination and Standards activities
• Standardization of Lexicon Interchange Format
• Negotiations on Semantic Medical document indexing with private and public partners in Germany
• 1 IST call 4 proposal
•Catholic University of Paraná, Brazil
–Lexeme acquisition–EHR indexing and retrieval
WP 20 partners involved in several new EU projects
(@neurist, BootSTREP…)
![Page 18: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/18.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
2005: Evaluation: Multilingual Medical Dictionary (WP20)
• Q1. Workshops and Symposiums– Active Participation at Summer School 2005– Preparation of Workshop at LREC ’06 “Acquiring and representing
multilingual, specialized lexicons: the case of biomedicine”– Presentations in numerous international conferences (ACM-SIGIR,
MIE, AMIA, MEDNET…)
• Q2. Sharing of resources and use of research software tools– lexical resources, lexicon editing tools, lexicon acquisition tools,
domain specific text corpora
• Q6. Short and medium-term visits– 8 short and medium term visits
• Q7. Co-authoring of research papers – 13 co-authored peer-reviewed papers
![Page 19: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/19.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
2006 ?
![Page 20: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20.](https://reader035.fdocuments.us/reader035/viewer/2022062600/5a4d1b8a7f8b9ab0599be3c1/html5/thumbnails/20.jpg)
Annual Review, Brussels March XX, 2006 SemanticMining No.507505
Goals for 2006
• Enhance showcase applications• Automatically acquire
acronyms expansions• Complete and share domain
corpora
Sharing Tools and Resources
International CooperationFund Raising
Dissemination and Standards activities
• Use of acquired lexicons, lexical links and corpora for bootstrapping the acquired lexicon
• At least one contract between one WP20 partner and a private or public customer
• Preparation of IP project for 7th Framework programme, expanding the lexicon’s scope to all major European languages
•Catholic University of Paraná, Brazil
–Lexicon validation–Semantic EHR indexing and retrieval in a hospital setting