AnimalIdGHEP2015Pilar · 08/09/2015 9 The reference SPInDel profiles for the species: Species...
Transcript of AnimalIdGHEP2015Pilar · 08/09/2015 9 The reference SPInDel profiles for the species: Species...
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80%
20%
0%
Positives out of N=41 Results
BLOOD %
SEMEN %
SALIVA %
0
10
20
30
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POSITIVE RESULTS NA
50%
12,5%
21,9%
0
58,5%
0
10
20
Positive Negative
0
19
Phadebas 54.3 %
0
10
20
Positive Negative
0
14
RSIDTM-Saliva 40 %
0% 10% 20% 30% 40% 50% 60% 70% 80% 90%
Peroxidase
Immuno
RSIDTM-Blood (Glycophorin A)
OBTI® Hemoglobin
HemaTrace® Hemoglobin
RapidSignal Occult Blood-Hemoglobin
Hem-Direct® Hemoglobin
Hem-Check®
Teichmann crystals
HPLC
% Given results
Pruebas orientativas
• Induciendo el desprendimiento de oxígeno (capacidad del grupo Hemo para
la actividad peroxidasa). El O2 actúa en sustrato de bencidina (Adler), Luminol
(derivado ácido ftálico), Thevenon Roland-Piramidón
Pruebas de certeza
1.Cristalográficas (Teichmann, cristales de hematina; Tackayama: hemocromógeno)
2.Espectroscópicas (espectro absorción Hb y derivados)
3. Cromatográficas (TLC, HPLC)
Pruebas específicas Inmunológicas
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0
5
10
15
20
25
30
20
0 0 0 0 0 0 0
211
26
4
16
12 2
1
4
0
Positive
Negative
Inconclusive
Positive Negative Inconclusive
3
2 2
Alternate Lights 2 %
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0
5
10
15
20
25
0 0 0
4
10
23
4 4
Positive
Negative
Boward ES. 2015. Forensic Magazine. 05/21/2015. On the scene and In the lab.
10; 40%
2; 9%
11; 44%
2; 9%
Cytochrome b
sequencing
CO I,II sequencing
SPInDEL
STRs
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RecomendacionesLinacre et al. 2011. ISFG Recommendations
regarding the use of non-human (animal) DNA in
forensic genetic investigation. Forensic
Science International: Genetics. doi:10.1016/j.fsigen.2010.10.017
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92%
100%
50%
0%
20%
40%
60%
80%
100%
120%
Sequencing SPInDEL STRs
Positive identification N=24
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SPInDel multiplex
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Graphical representation of the six ribosomal RNA (rRNA)target regions in the mitochondrial DNA (mtDNA) amplifiedby multiplex PCR in the SPInDel profiling kit
Schematic illustration of the strategy used inthe species identification by theinsertions/deletions (SPInDel) method
Four conserved regions (green boxes) define threehypervariable domains (dotted brown lines). A section of thealignment is magnified to show the presence of multiple gapsin hypervariable regions. Each species is identified by anumeric profile resulting from the combination of lengths inhypervariable regions. Pereira F, Carneiro J, Matthiesen R, van Asch B, Pinto N, Gusmão L,
Amorim A. Identification of species by multiplex analysis of variable-length sequences. Nucleic Acids Res. 2010 Dec;38(22):e203.
The reference SPInDel profiles for the 10 target species are:
Species Markers SPID2716 SPID1350 SPID639 SPID1051 SPID2975 SPID2173 Capra hircus (Goat) 11 15 12 14 13 14 Canis lupus familiaris (Dog) 19 11 12 13 19 15 Equus caballus (Horse) 18 25 16 15 17 15 Oryctolagus cuniculus (Rabbit)17 11 12 13 16 17 Felis catus (Cat) 13 13 14 15 19 12 Homo sapiens (Human) 10 10 11 10 10 11 Ovis aries (Sheep) 11 15 13 14 12 16 Sus scrofa (Pig) 14 17 13 13 16 10 Mus musculus (Mouse) 12 10 11 15 15 14 Bos taurus (Cattle) 11 16 10 14 11 14
Carneiro J, Pereira F, Amorim A. Mol Ecol Resour. 2012 12(6):1190-5.
Pereira F, Carneiro J, Matthiesen R, van Asch B, Pinto N, Gusmão L, AmorimA. Nucleic Acids Res. 2010 Dec;38(22):e203.
Spanish and Portuguese-Speaking Working Group of the InternationalSociety for Forensic Genetics (GHEP-ISFG) http://www.gep-isfg.org/pt/comisses-trabalho/exercicio-colaborativo-ghep-isfg-8220spindel.html
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The reference SPInDel profiles for the species:
Species Markers SPID2716 SPID1350 SPID639 SPID1051 SPID2975 SPID2173 Sus scrofa (Pig) 14 17 13 13 16 10
Carneiro J, Pereira F, Amorim A. Mol Ecol Resour. 2012 12(6):1190-5.
Pereira F, Carneiro J, Matthiesen R, van Asch B, Pinto N, Gusmão L, AmorimA. Nucleic Acids Res. 2010 Dec;38(22):e203.
Spanish and Portuguese-Speaking Working Group of the InternationalSociety for Forensic Genetics (GHEP-ISFG) http://www.gep-isfg.org/pt/comisses-trabalho/exercicio-colaborativo-ghep-isfg-8220spindel.html
STRs identification: Descripción del número de alelos identificados en distintas poblaciones para cada marcador microsatélite
Marker Populations
1 2 3 4 5SW1370 5 6 10 7 10SW1824 6 5 8 6 10SW1891 7 3 6 5 10SW1904 5 6 8 8 12SW21 4 4 4 4 6SW2156 6 7 10 9 13SW2519 4 5 7 6 11SWR2527 5 5 9 7 10SW818 6 7 9 6 12SWR1829 9 6 9 9 12
Estudio intraespecífico. STRstetraméricos. Individualización.
Linacre et al. 2011. Forensic Science
International: Genetics. doi:10.1016/j.fsigen.2010.10.017
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Locus Fluorescent
labelSize
(bp)
Sequence of primers (5’-3’)*
SW24 FAM 19 F: CTT TGG GTG GAG TGT GTG CR: ATC CAA ATG CTG CAA GCG
SW936 HEX 21 F: TCT GGA GCT AGC ATA AGT GCCR: GTG CAA GTA CAC ATG CAG GG
S0355 HEX 26 F: TCT GGC TCC TAC ACT CCT TCT TGA TGR: GTT TGG GTG GGT GCT GAA AAA TAG GA
SW72 NED 18 F: ATC AGA ACA GTG CGC CGTR: TTT GAA AAT GGG GTG TTT CC
*Putnova et al. 2003. Czech Janim Sci., 48 (8): 307-314.
Lin et al. 2014. Forensic Sci. Int.: Genetics 9: 12-19Naue et al. 2014. Int J Legal Med. 128: 11-18
Rohrer et al. 2007. Animal Genetics 38: 253-258
Escena del crimen (especies domésticas)
Tráfico de especies exóticas
Dípteros (análisis PMI)
Fraude alimentario
Microbiología forense