An Introduction to Metabolism
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Transcript of An Introduction to Metabolism
An Introduction to Metabolism
Metabolism, energy and lifeEnzymesThe control of metabolism
Metabolism
Metabolism- totality of an organism’s chemical reactions
Metabolism
Catabolic pathways- release energy by breaking down complex molecules to simpler compounds
Metabolism
Anabolic pathways- consume energy to build complex molecules from simpler compounds
Energy
Energy- capacity to do work Kinetic energy- the energy of motion Potential energy- the capacity to do work,
energy stored as a result of its location or structure
Chemical energy- form of potential energy- stored in molecules as a result of the arrangement of the atoms
Metabolism, energy, and life
Metabolism = anabolism + catabolism
Metabolic reactions are organized into pathways
Energy: kinetic and potential
Thermodynamics
Thermodynamics- study of energy transformations
The First Law- the energy of the universe is constant
Energy can be transferred and transformed but it cannot be created or destroyed
“principle of conservation of energy”
Thermodynamics
The Second Law- Every energy transfer or transformation increases the entropy of the universe
Entropy- the measure of disorder
Free Energy- the portion of a system that can perform work It is available for work Symbol is G
Exergonic reaction- “energy outward”Proceeds with a net release of free energyOccurs spontaneouslyEndergonic reaction- “energy inward”
absorbs free energy from its surroundingsnonspontaneous
Energy Coupling- the use of an exergonic process to drive an endergonic one
Cells are kept alive with a flow of energyThe products of a reaction become the
reactants of the next reaction.
Rube Goldberg Machine
Cellular Work
1. Mechanical work 2. Transport work 3. Chemical work
ATP
Adenosine Triphosphate Adenine bonded to riboseRNA has one phosphate group attached to riboseATP has three phosphate groups attached to ribose
ATP to ADP
Phosphate bonds- broken by hydrolysis Without 3rd Phosphate Group= Adenosine
Diphosphate (ADP) and inorganic phosphate
ATP + H2O → ADP + Pi
Test tube: Change in G = -7.3 kcal/molCell: Change in G= -13 kcal/mol
ATP to ADP
Is this reaction Exergonic or Endergonic? Exergonic- ADP is more stable than ATP,
energy is released with the loss of Pi
Negative G value
Phosphorylation
Pi is not transferred into solution, given to another compound
Compound receiving the Pi is phosphorylated.
ATP cycle
ATP + H2O → ADP + Pi
Change in G =-7.3 kcal/molADP + Pi → ATP + H2O
Change is G = 7.3 kcal/mol
Enzymes
Catalyst- chemical agent that changes the rate of a reaction without being consumed by the reaction
Enzyme- catalytic protein
Activation Energy or “free energy of activation” – the energy required to break the bonds in the reactants
Symbol- EA
Cellular issue with heat
Induced fit hypothesis
Change in the shape of an enzyme’s active site, which is induced by the substrate.
Enzyme-substrate complex
Substrate held by weak interactions- hydrogen and ionic bonds
R-groups of amino acid chain of the protein catalyze the substrate
Lowering the EA
Active site • Stresses critical bonds that must be broken• Can provide a microenvironment
Ex: Acidic R groups form a pocket of low pH
• Brief bonding- covalent bonding between substrate and R groups
Rate of reaction
Determined by the concentration of substrate and enzyme
Saturation point
Temperature and pH
Optimal TemperatureOptimal pH
Cofactors
Bind to active site permanently or loosely Inorganic Organic- coenzyme
Inhibitors
Competitive inhibitors- block active site Noncompetitive inhibitors- bind to another
part of enzyme Types: poison, antibiotics
When is it useful to inhibit enzymes?
Allosteric regulation
Allosteric site- specific receptor site on enzyme away from active site
Can activate or inhibit
Feedback inhibition
Most commonPathway switch off by its end product
Cooperativity
Substrate induces enzyme to accept more substrates
Multienzyme complex
Team of enzymes assembled together
Ex: Mitochondria in eukaryotic cells- enzymes for respiration are clustered together