AN IN SILICO APPROACH TO ENDOCRINE DISRUPTORS: THE MOLECULAR MODELLING...
Transcript of AN IN SILICO APPROACH TO ENDOCRINE DISRUPTORS: THE MOLECULAR MODELLING...
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
Molecular Modelling Lab
Food amp Drug Department
University of Parma
AN IN SILICO APPROACH
TO ENDOCRINE DISRUPTORS
THE MOLECULAR MODELLING VIEW
Pietro Cozzini
TOO MANY CHEMICALS EVERY YEARImpossible to test in a wet lab
AIM To borrow drug design techniques for food science
Many compounds of interest for food science are able to mimic endogenous molecules
Toxins
Food
additivesNatural compounds
Industrial or packaging
contaminants
Many proteic targets has been identifiedhelliptoo much to be identified
AIM To predict the energy interaction between a small molecule and a large protein
TARGET STRUCTURE
LIGANDSTRUCTURES
LIGAND BASED SCREENINGQSAR
HTPSCOMBICHEM
NO
YESNO
A MOLECULAR MODELLING FLOW CHART
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
TOO MANY CHEMICALS EVERY YEARImpossible to test in a wet lab
AIM To borrow drug design techniques for food science
Many compounds of interest for food science are able to mimic endogenous molecules
Toxins
Food
additivesNatural compounds
Industrial or packaging
contaminants
Many proteic targets has been identifiedhelliptoo much to be identified
AIM To predict the energy interaction between a small molecule and a large protein
TARGET STRUCTURE
LIGANDSTRUCTURES
LIGAND BASED SCREENINGQSAR
HTPSCOMBICHEM
NO
YESNO
A MOLECULAR MODELLING FLOW CHART
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
AIM To borrow drug design techniques for food science
Many compounds of interest for food science are able to mimic endogenous molecules
Toxins
Food
additivesNatural compounds
Industrial or packaging
contaminants
Many proteic targets has been identifiedhelliptoo much to be identified
AIM To predict the energy interaction between a small molecule and a large protein
TARGET STRUCTURE
LIGANDSTRUCTURES
LIGAND BASED SCREENINGQSAR
HTPSCOMBICHEM
NO
YESNO
A MOLECULAR MODELLING FLOW CHART
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
AIM To predict the energy interaction between a small molecule and a large protein
TARGET STRUCTURE
LIGANDSTRUCTURES
LIGAND BASED SCREENINGQSAR
HTPSCOMBICHEM
NO
YESNO
A MOLECULAR MODELLING FLOW CHART
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
TARGET STRUCTURE
LIGANDSTRUCTURES
LIGAND BASED SCREENINGQSAR
HTPSCOMBICHEM
NO
YESNO
A MOLECULAR MODELLING FLOW CHART
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
TARGET STRUCTURE
LIGANDSTRUCTURES
STRUCTURE BASED DRUG DESIGN
DE NOVODESIGN
YES
YESNO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
The Lock and Key model (and the Locksmith)
+
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
FAST amp CHEAP
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
IN SILICO
IN VITRO
IN VIVO
Thousandhelliphelliphelliphellip
Millions
Tens
Few units
Food Chem Toxicol2008 Mar46 Suppl 1S2-70 doi 101016jfct200802008Safety and nutritional assessment of GM plants and derived food and feed the role of animal feeding trialsEFSA GMO Panel Working Group on Animal Feeding Trials
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
STRUCTURE SOURCES
X-RAY and NEUTRON DIFFRACTION
NMR
HOMOLOGY MODELLING
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
X-ray diffraction
Neutron diffraction
NMR
Homology Modelling
Resolution value
Atom and Bond types attribution
Hydrogens position
Water orientation
Differences between crystallization pH
and Ki determination pH
Incompatibility between different
molecular modelling programs (SYBYL
Insight MacroModelhellip)
difficulties
STRUCTURAL DATA BE CAREFUL
TECHNIQUES STRUCTURAL LIMITS
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
THE DOCKING PROBLEM
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
HOW CAN WE BUILD RELIABLE MODELS AND OBTAIN GOOD PREDICTION IN TIME
Positioning a geometryproblem
Evaluation energy a chemistryproblem
ScreeningDocking engine Fast Scoring Function
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
UNBOUND STATE
BOTH LIGAND AND
RECEPTOR ARE
SOLVATED AND DO NOT
INTERACT
BOUND STATE
LIGAND AND RECEPTOR
ARE PARTIALLY
DESOLVATED AND THEY
INTERACT WITH OR
WITHOUT THE SOLVENT
CONTRIBUTION
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Virtual Screening
Structure based
Ligand based
Docking and Consensus Scoring (Re-scoring)
GOLD HINT
Our computational approach
FLAP amp GRID approach
3D DB
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
TOOLS
Ligand and Binding Site
Structure Analisys
Virtual screening
Dockingscoring simulations
Re-scoring procedure
GOLD (Parma)
LIFE EDESIA
HINT(Hydropathic INTeractions)
HINT empirical scoring function based on experimental LogPow
values
MOLEGRO MolDock (Etnalead)
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Another definition of a docking machine
(for someone)
NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Unsuccesfull dockings
PDB protein ligand failure
1aaq HIV-1 protease Hydroxyethylene isostere Very flexible ligand
1rne renin CGP38560 Very flexible ligand
1poc Phospholipase A2 phosphoenolamine Very flexible ligand
1lic LBP Hexadecanesulfonic acid Very flexible ligand
1eed endothiapepsin PD125754 Very flexible ligand
1eap Catalytic antibody phosphonate
Flexible ligand
symmetrical distribution of
apolar groups
1glqGlutathione
transferaseglutathione Partially buried ligand
1mer IGD light chain N-acetyl-L-His-D-Pro-Oh OpenShallow active site
1ghb Chymotrypsin N-acetyl D-Trp Short intemolecular dist
1ive Neuroaminidase Aminobenzoic acid Short intemolecular dist
Kellenberger et al PROTEINS 57225-242 (2004)
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Docking Results Accuracy
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
IFthe interaction is predicted positive
THENthe compounds should be subjected to further experimental trials
ELSE IFthe prediction is negative
THENfurther experiments should be carried on in order to verify the strength of the technique improve
method and deeply understand molecular mechanisms of bindingactivity
ENDIF
CASE STUDIESdrugs food or contaminants it is always chemistry
drug molecules or food molecules could act as xenoestrogens
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
VALIDATION OF AN ldquoIN SILICOrdquo METHOD FOR THE SCREENING
OF THE INTERACTION BETWEEN ESTROGEN RECEPTORS
ALPHA AND FOOD MOLECULES
The method resulted highly predictive for Parabens and PCBs (074 and 065 r2 respectively)
and alkylphenols (r2 042 and a 71 success rate)
DB of 126 ligands
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
SCREENING OF FOOD POLLUTANTS
493 compounds
53 choosen
37 analized
13 potential xenoestrogens
1500 compounds
Database developed from JEFCA and EAFUS(Joint FAOWHO Expert Committee on Food additives and Evrythings Addes to the Food in
USA)
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
IN VITRO TESTS
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
ER-B
H12 H12
H12H12
AR PPAR
ER-Α
LIFEEDESIA NUCLEAR RECEPTORS
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Macro Flexibility αER-LBD
Active Inactive
OPEN
(ANTAGONIST)CONFORMATION
CLOSE (AGONIST)
CONFORMATION
H12
H12
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
BINDING SITE
bull Glu 353
bull Arg 394
bull Asp 351
bull His 524
How many conformations of the
receptor two or more
Testo
LOCAL FLEXIBILITY HIS 524
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Even if a docking program could easily find an accurate
pose for a ligand accurate ranking sometimes remains
an issue
moreoverhellip
Docking Problems and Limits
Impossible simulation of covalent interactions formation
and breaking
Difficult evaluation of water molecules contribution
High MW ligands are difficult to dock
High percentage of false-positive results in virtual
screening
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
LIFE EDESIA
SCREENINGQSAR DBASE Literature
DOCKINGSCORING
(54 CHEMICALS)
ER-a
ER-b
AR-wt
AR-mt
PARMACATANIA
Consensus Docking Report
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
bull BISPHENOLS
bull PHTHALATES
bull PARABENS
bull ACIDS
bull MISCELLANEOUS
LIFE EDESIA SCREENING
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
LIFE EDESIA RESULT(Unpublished data)
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Now we are ready for in vitro testsin a wet lab
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
EFSA ndash IPAM day
3rd LIFE-EDESIA workshop on
Endocrine Disruptors and alternative methods to animal testing - a scientific and regulatory perspective
Parma (I) 28022018
Endocrine Disruptors and the in vitro alternative methods to animal testing
THANK YOU FOR YOUR ATTENTION
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
CAS Common name Chemical class
117-81-7 DEHP Phtalates
100-97-0 hexamethylenteramine Miscellaneous
102-76-1 glyceryl triacetate Miscellaneous
103-23-1 diethylhexyladipate Miscellaneous
105-08-8 CHDM Miscellaneous
105-99-7 DBA Miscellaneous
110-17-8 fumaric acid Acids
110-44-1 sorbic acid Acids
120-61-6 DMTP Phtalates
122-62-3 dioctylsebacate Miscellaneous
1241-94-7 DEHPA Phtalates
128-37-0 BHT Phtalates
1478-61-1 bisphenol AF Bisphenols
151882-81-4 BTUM Miscellaneous
1571-75-1 bisphenol AP Bisphenols
166412-78-8 DINCH Phtalates
1675-54-3 BADGE Bisphenols
2095-03-6 BFDGE Bisphenols
232938-43-1 Pergafast201 Bisphenols
24038-68-4 BisOPP-A Bisphenols
28553-12-0 Di-isononyl phthalate Phtalates
3010-96-6 CDBO Miscellaneous
3319-31-1 TEHTM Phtalates
3380-34-5 Triclosan Parabens
41481-66-7 TGSA Bisphenols
5129-00-0 MBHA Bisphenols
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
CAS Common name Chemical class
52-51-7 bronopol Miscellaneous
5397-34-2 S-24-bisphenol Bisphenols
55-56-1 Chlorhexidine Miscellaneous
620-92-8 bisphenol F Bisphenols
63134-33-8 BPS-MPE Bisphenols
6422-86-2 DOTP Phtalates
65-85-0 Benzoic_acidbenzoate Acids
67-63-0 isopropyl alcohol Miscellaneous
6915-15-7 malic acid Acids
77-90-7 Acetyltributylcitrate Miscellaneous
78-42-2 TEHPA Miscellaneous
79-09-4 propionic acid Acids
79-97-0 bisphenol C Bisphenols
80-05-7 Bisphenol A Bisphenols
80-09-1 S-44-bisphenol (BPS) Bisphenols
82469-79-2 BTHC Miscellaneous
84-66-2 DEP Phtalates
84-69-5 Diisobutylphthalate Phtalates
84-74-2 Di-buthyl phtalate Phtalates
84-77-5 Di-n-decyl phthalate Phtalates
88-19-7 OTSA Miscellaneous
93589-69-6 17-Bis(4-hydroxyphenylthio)-35-dioxaheptane Bisphenols
94-13-3 Propyl paraben Parabens
94-18-8 PHB Parabens
95235-30-6 D8 Bisphenols
97042-18-7 BPS-MAE Bisphenols
99-76-3 Methyl paraben Parabens
methylmaltoside methyl_maltoside Sugars
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Bisphenols
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Bisphenol A YES - YES- YES - Maybe -
bisphenol AF YES YES YESYES YES NO NO NO
bisphenol AP YES YES YESYES NO NO Maybe Maybe
BADGE NO NO NO NO Maybe YES YESYES
BFDGE NO NO NO NO Maybe Maybe YESYES
Pergafast201 NO NO NO NO NO NO NO NO
BisOPP-A NO NO NO NO NO NO NO
TGSA NO NO NO NO NO NO NO NO
MBHA YES YES YESYES Maybe Maybe Maybe YES
S-24-bisphenol YES YES YESYES NO NO NO NO
Bisphenol F YES YES YESYES Maybe YES NO NO
BPS-MPE NO YES NO YES NO NO NO NO
Bisphenol C NO NO NO NO Maybe NO YESMaybe
BPS NO NO NO NO NO NO NO NO
17-Bis(4-hydroxyphenylthio)-
35-dioxaheptane NO NO NO NO Maybe YES Maybe NO
D8 NO YES NO YES NO NO Maybe Maybe
BPS-MAE NO NO NO NO NO NO Maybe YES
rarr indicates incongruence of prediction between docking methods
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Phthalates
Common Name ER ER ARwt ARmut
HINTMolD HINTMolD HINTMolD HINTMolD
DEHP NO - NO - NO - NO -
DEP NOsect - NOsect - NO - NO -
Diisobutylphthalate NO - NO - NO - NO -
DEHPA NO NO NO NO NO NO NO NO
BHT NO NO NO NO NO NO NO NO
DINCH NO NO NO NO NO NO NO NO
Di-isononyl phthalate NO NO NO NO NO NO NO NO
TEHTM NO NO NO NO NO NO NO NO
DOTP NO NO NO NO NO NO NO NO
DMTP NO NO NO NO NO NO NO NO
Di-buthyl phthalate NOsect NO NOsect NO NO NO NO NO
Di-n-decyl phthalate NO NO NO NO NO NO NO NO
sect rarr NON agonistic activity cannot be excluded
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Parabens
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Methyl paraben YES - YES- NO - NO -
Propyl paraben YES - YES- NO - NO -
Triclosan NO NO NO NO NO NO NO NO
PHB YES YES YESYES Maybe Maybe NO NO
Acids
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
Benzoic acid NO NO NO NO NO NO NO NO
Sorbic acid NO NO NO NO NO NO NO NO
Propionic acid NO NO NO NO NO NO NO NO
Fumaric acid NO NO NO NO NO NO NO NO
Malic acid NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO
Miscellaneous
Common Name ER ER ARwt ARmut
HTMD HTMD HTMD HTMD
hexamethylenteramine NO NO NO NO NO NO NO NO
glyceryl triacetate NO NO NO NO NO NO NO NO
diethylhexyladipate NO NO NO NO NO NO NO NO
CHDM NO NO NO NO NO NO NO NO
DBA NO NO NO NO NO NO NO NO
dioctylsebacate NO NO NO NO NO NO NO NO
BTUM NO NO NO NO NO NO NO NO
CDBO NO NO NO NO NO NO NO NO
bronopol NO NO NO NO NO NO NO NO
Chlorhexidine NO NO NO NO NO NO NO NO
isopropyl alcohol NO NO NO NO NO NO NO NO
Acetyltributylcitrate NO NO NO NO NO NO NO NO
TEHPA NO NO NO NO NO NO NO NO
methylmaltoside NO NO NO NO NO NO NO NO
BTHC NO NO NO NO NO NO NO NO
OTSA NO NO NO NO NO NO NO NO