Amino Acid Sequence Comparison between FGL2...
Transcript of Amino Acid Sequence Comparison between FGL2...
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Amino Acid Sequence Comparison between FGL2 and Claudin-1 Proteins in Hepatitis
By: Nicolle A. Rosa School: Levittown Baptist Academy Mentors: Dorielys Valentin and Karoline Rios
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Outline
• Introduction
• Methods
• Results
• Conclusions
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Introduction: Hepatitis
• Inflammation of the liver
• Infectious viral disease
• May be caused by toxins
• Could be acute or chronic
lookfordiagnosis.com
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Introduction: Hepatitis B
• Transmitted mostly by infectious body fluids
• Preventable by vaccination
• Associated with fibroleukin prothrombinase
hephelp.net
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Introduction: FGL2
• Causes blood to clot
• Leads to blockages in the vessels
• Causes a death of tissue in the liver
genecards.org
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Introduction: Hepatitis C
• Most chronic form of hepatitis
• No vaccine has been developed
• Transmitted by blood to blood contact
• Associated with claudin-1 protein
trialx.com
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Introduction: Claudin-1
• Involved in the maintenance of the cell’s structure
• Required for the virus to enter the cell
• Acts when the virus bounds to the cell
ghr.nlm.nih.gov
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Objectives
• Determine the percentage of conserved amino acids between species.
• Infer phylogenetic trees to indicate the evolutionary changes between species and their amino acid sequences.
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Methodology
Methodology
BLAST
ClustalW2
GeneDoc
MEGA5
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Species selected for Comparison for Hepatitis B:
Bos taurus Sus scrofa Mus musculus
biopix.es
Methodology
m.forocoches.com arabrapto.blogspot.com
Rattus norvegicus Salmo salar Nomascus leucogenys
discoverlife.org es.wikipedia.org animaldiversity.ummz.umich.edu
Equus caballus Loxodonta africana Ornithorhynchus ananitus
dbird.us en.wikipedia.org usuarios.multimania.es
Gallus gallus
ncbi.nlm.nih.gov
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Species selected for Comparison for Hepatitis C:
Methodology
Macaca mulatta Cricetulus griseus Sus scrofa
cienciamia.net midlandhamsterclub.co.uk globedia.com
Rattus norvegicus Bos taurus Ovis aries
ratremover.com fr.wikipedia.org factspage.blogspot.com judywoods.dial.pipex.com
Oryctolagus cuniculus Xenopus laevis Gallus gallus
guillermobustamante.com.mx combinacionanimal.blogspot.com
Danio reiro
misterpez.com
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Genedoc Results for Hepatitis B
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Genedoc Results for Hepatitis C
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0%
2%
4%
6%
8%
10%
12%
LGNDE
Comparative Graph of Amino Acids for Hepatitis C
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Comparative Graph of Amino Acids for Hepatitis C
0%
2%
4%
6%
8%
10%
12%
14%
ILAVM
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Maximum Phylogenetic Tree for Hepatitis B
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Minimum Phylogenetic Tree for Hepatitis B
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Maximum Phylogenetic Tree for Hepatitis C
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Minimum Phylogenetic Tree for Hepatitis C
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Conclusions for Hepatitis B
• The amino acids are 9% conserved between the compared species.
• The graph shows that the most highly expressed amino acid is leucine.
• The maximum phylogenetic tree shows that Equus caballus and Loxodonta africana are the most similar while Salmo salar the least.
• In the minimum phylogenetic tree, the most similar species are Homo sapiens and Nomascus leucogenys, while Rattus norvegicus the least similar.
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Conclusions for Hepatitis C
• The amino acids are 26% conserved between the compared species.
• The graph shows that the most highly expressed amino acid is isoleucine.
• Both the maximum and minimum phylogenetic trees show that Bos taurus and Ovis aries are the most similar while Sus scrofa the least.
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References
• http://www.sciencedaily.com/releases/2007/02/070227213105.htm
• http://www.eurekalert.org/pub_releases/2003-07/uot-ric070203.php
• http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002139/
• http://www.webmd.com/hepatitis/hepb-guide/hepatitis-b-topic-overview
• http://www.medicinenet.com/hepatitis_c/article.htm
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•Dorielys Valentin •Karoline Rios • Institute of Mathematics: Saturday Academy •Dr. Juan Arratia •Dr. Sudhir Kumar •Allan Filipski •Wanda Rodriguez, Program Coordinator
Acknowledgements
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Any Question?