Requirements for caBIG Infrastructure to Support Semantic Workflows
All Rights Reserved, Duke Medicine 2007 Duke Cancer Institute caBIG Implementation Strategy...
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Transcript of All Rights Reserved, Duke Medicine 2007 Duke Cancer Institute caBIG Implementation Strategy...
All Rights Reserved, Duke Medicine 2007
Duke Cancer InstitutecaBIG Implementation Strategy
Presented to caBIG Architecture WS
May 06, 2011
Pankaj AgarwalDuke Bioinformatics Shared ResourceDuke Cancer Institute
All Rights Reserved, Duke Medicine 2007
Agenda
• Duke Cancer Institute• caBIG Development and Adoption• Building Blocks• caBIG® Implementation Framework• Benefits of caBIG® Adoption• Current Pilot• Future Plans
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Duke Cancer Institute
• Duke Hospital is in the top 10 “Honor Roll” hospitals and the top in the South by U.S.News & World Report.
• Top-Ranked in Cancer Care hospital (12th)• Significant expansion is underway…
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Duke Cancer Institute
• 7 floors, including 3 clinic floors• 267,000 square feet• Construction began: early 2010• Construction complete: early 2012• Estimated project cost: $222 million
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caBIG Development
– CTMS Knowledge Center– Cancer Central Participant Registry (C3PR)– caTRIP
• Many elements part of other caBIG applications
– RProteomics– VCDE Mentorship– Architecture Mentorship
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caBIG Adoption
– Flagship C3D implementation• Many trials in production, many more in development
– caAERS (CALGB and Duke) (recommended)– C3PR multi-center pilot – caGRID– RProteomics by June 2011– caArray
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Integration Hub
CTMS(eResearch)
CDMSC3D
(Oracle Clinical)
Safety Desk(ExtraView)
S/AE Reporting(caAERS)
API
Web Service
Pull Study Status/Agentfrom eResearch
MedWatch input from e-mail, fax, paper,
caAERS
Local investigator assessment for IRB
routing determination
Local IRB and/or affiliate sites
(FDA for SAEs)
MedWatch form generation for
Duke held IND/IDE
Promised API
Clinical Connector
eIRB(Click
Commerce)
Protocol #Short Title
Investigator nameStudy Status (initial)
Data Entity Overview
This diagram illustrates data in clinical trials research.
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Program Project (P01)Proposal
This flow diagram illustrates the Program Project (P01) Proposal.
Data Export Process
Invoice
Velos eResearchClinical Trial Management System ( CTMS )
Protocol/ Patient Management
BudgetReport/Financial
Data
Investigator/ CRC
Regulatory DocsBudget
Trial Protocol Dev .
DUKE Systems
caBIGTM
Applications
Invoice
Velos eResearchClinical Trial Management System ( CTMS )
Protocol/ Patient Management
BudgetReport/Financial
Data
Investigator/ CRC
Regulatory DocsBudget
Trial Protocol Dev .
DUKE Systems
caBIGTM
Applications
C3D Bladder (M-I)
Protocol
C3D BladderProtocol
Integration Hub
Reports
Analyses
Reports
Analyses
Via web service
iReviewTM
Query
Report Interface
iReviewTM
Query
Report Interface
Tool and Investigator
Report
Report
Report
Investigator
Report
Report
Report
caTissue
Web Service
Cancer Adverse Event Reporting System (caAERS)
ClinicalConnector
SAS Datasets
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Benefits of caBIG Adoption• C3D
– Top-shelf CDMS (with CBIIT tech. support)– Regulatory compliant (21 CFR Part 11)– Shared Global Library (parent-child)– caDSR-Direct (local curation ability)– Thousands of Common Data Elements– Development curve
• Less steep now, new trials up much faster• More cluster (brain, breast, etc) replication
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Supported Projects on caBIG Platforms
Goal: All Investigator-initiated Clinical Trials•Currently ~40 trials in production or development
– Single and multi-center– Both IND/IDE and Registry
•International– Launching first trial with Beijing Cancer
Hospital• …more to come
•Funding Mix – Gov’t – NIH (NCI, NINDS, etc) and DoD– Foundation (Komen, etc.)– Industry/Pharma
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Duke-Beijing Abraxane Trial
First CT collaboration
caTissue-based tumor registry
Future network in China
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C3PR Multi-center Pilot (Completed)
• PANVAC multi-center vaccine study– Grid-enabled– Secure– Accessible
Dorian
GTS
CDS
webSSO
caXchange
Key
IdP
Study ServiceRegistration
Service
XYZ Cancer Center
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Adoption In Progress
• caTissue– Pilot implementation underway– Potential for broad institutional adoption
• caArray – Installed– caGrid enabled
• DSIC tools (being evaluated)– Primarily to meet data sharing requirement
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Other Projects
CCSG Core Grant Supplements• CTRP Early Adopter• ADOPT RDC• Center Deployment Lead
caBIG Participant Contracts• Architecture (Pankaj Agarwal)• VCDE (Sal Mungal)
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Future Plans
• C3D– Streamline trial start-up with eCRF
Harmonization– Exchange data with caAERS– Complete integration with Velos eResearch
• Expanded use of caARRAY by Bioinf. group• China
– Set-up local Suite environment in Beijing– Build-out multi-center Chinese network