A.Joutchkov *, N.Tverdokhlebov *, S.Arnautov **, A.Yanovsky **, Y.Lyssov ***, A.Cherny ***...
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Transcript of A.Joutchkov *, N.Tverdokhlebov *, S.Arnautov **, A.Yanovsky **, Y.Lyssov ***, A.Cherny ***...
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A.Joutchkov*, N.Tverdokhlebov*, S.Arnautov**, A.Yanovsky**, Y.Lyssov***, A.Cherny***
*Telecommunication Center “Science & Society”
** Institute for Chemical Physics RAS
*** Institute for Molecular Biology RAS
Developmentof an Interdisciplinary fragment
of the Russian Grid segment: state of the art
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Telecommunication Centre “Science and Society”
“Science and Society”
Association of ScientificSocieties of Russia
State Institute ofInformation Technologiesand Telecommunications
“Open Society” Institute
MoscowCommunication
BackboneMinistry of Science Scientific Society
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Our areas of interest
• Telecommunication Grid infrastructure – Gigabit backbone development and maintenance.
• Biomedical metacomputing – Grid-based decisions for large-scale computing tasks in biology and health care.
• Investigating Grid-related aspects of knowledge networks (KN).
• Grid-services providing using specialized portals for interested users (scientific organizations mainly).
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SINP MSU – Institute for Nuclear Physics at MSU
Science & Society – There we are
IOC – Institute for Organic Chemistry
EIMB – Institute for Molecular Biology
ITEP – Institute for Theoretical and Experimental Physics
IITP – International Institute for Theory of Earthquake Prognosis
RSSI – Research Space Science Institute
М9 – Gateway to World
- Prospective
RGridin Moscow
Moscow Medical
Academy
Institute for
Biomedical Chemistry
National Research Center for Surgery
Institute for Virusology
StateScientific Center for
Immunology
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Backbone of the RGrid
ITEPIOC RAS
Science & Society320 SI95, 0.28 TBSINP MSU
SCC MSU
Gateway to FREENET
Gatewayto YuMOS
Gateway toCOSMOS
Gateway to RUHEP
ICP RAS
EIMB RAS
RbNet
С3524…
FastEthernet 100 MB/s
GigaEthernet 1GB/s
GENOMEResources
IITPRSSI
M9
……
…
С5505
……
…
С5505
С3524…
С3524…
С3524…
С3524…
… future connections
С3524…
С3524…
С3524…
GBI RAS
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GRID – InterdisciplinaryProject
• Unifying resources • Grid Technologies (Globus, …)
• Grid Teams (Working groups, Testbeds, …)
• Distributed Computation Implementation (LCG, BLAST,...)
• “Knowledge networks” development (Genomics,
Health Care, Ecology, Chemistry)
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“Science & Society”for Russian HEP Grid
ALICE distributed computations Communication using RGrid clusters
ATLAS backbone, Grid controlCMS software Testbed 0, Testbed 1, … WP 6
LHCb
LHC Our Gridexperiments role activity
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DNA LengthBacteria 1-3.106
Plants 1-5.108
You and me 4.109
Computationalcomplexity
“Science & Society”for Computational Biology
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BioGrid subsegment
IOC RAS
Science & Society320 SI95, 0.28 TB
ICP RASIBCP RAS
EIMB RAS
FastEthernet (100 Mb/s)
GigaEthernet (1,0 Gb/s)
С3524…
С3524…
С3524…
GBI RAS
Windows Clusterof EIMB
farm1
farm2
farm3
farm4
Farm-central
S & SCluster
Institute for Biomedical Chemistry
Virusology Institute
will be connected
in 2002
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BLAST experiment on RGrid:Web-portal for BLAST users Distributed computation schema
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BLAST experiment on “Grid”
(1st step - without Globus)
Windows Clusterof EIMB
Farm-central
farm1
farm2
farm3
farm4
UserQuery
blast.exe
blast.exe
blast.exe
blast.exe
executioncomputers
GUI
BLAST-run daemon
BLAST-end daemon
Datatransfer daemon
Data area
Data daemon
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BLAST experiment : Search Results
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BLAST experiment under PBS (2nd step – still without Globus)
Windows Clusterof EIMB
Farm-central
farm1
farm2
farm3
farm4
UserQuery
blast.exe
blast.exe
blast.exe
blast.exe
executioncomputers
GUIwww.rgrid.ru
PBS-server
Queue serverand
Task estimator
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BLAST experiment on Grid(3rd step – trying Globus)
Windows Clusterof EIMB
Farm-central
farm1
farm2
farm3
farm4
UserQuery
blast.exe
blast.exe
blast.exe
blast.exe
executioncomputers
GUIwww.rgrid.ru
PBS-server
GRAM
Userautentification
and autorization
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Knowledge Networks – a new level of data integration
Investigating Grid-aware aspectsof KN development
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Simple-way www-interaction
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Thin portal(1st step - links to services and resources)
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Thick portal (2nd step - searching, collecting and messaging)
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Broker ( 3rd element)
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Metadata formatsfor Data Collections
• Dublin Core (15 elements);
• Dublin Core with qualificators;
• Learning Object Metadata;
• MARC (21, Rus);
• Content Standard for Digital Geospatial Metadata (FGDC);
• Encoded Archival Description (EAD).
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What further?
We are going:
• Develop requirements for hardware, software and middleware architecture of interdisciplinary Grid-node by experiments with Biomedical, HEP and Chemical tasks.
• Develop appropriate list of metadata formats to construct Knowledge Network prototypes.
• Develop requirements and specifications for common and specialized web-interfaces as GUI to Grid.